Rh4DG254800

Zinc finger CCHC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007741
Physical Location & Seq
Reverse (-)
47005662 .. 47007140
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG254800.1

Sequence Viewer

Length: 510 bp
ATGTCGAGTAAGAAAGAAGAGAAGGCTCAGGCCGCAGCAGAAAGGATCAAGGCTCAGGCCTTGAGTGCTGCCAAAGGTCTTAGTCGAGCTCAGGCTGAAAGGGCTGCTGCTGCTGCTGCCCGAAATGTTAATGCTTATGGTCAGAAGGAAGAAGGACCCAGCAGATGGCAGGAGAAAAGGGAAGCCAAGAGACAGATGTATCTGATGAGTACTGAAAAGGCAGTGAGACTGGGTGAAAGGAAAGACCTGAAGGCTAATGTATCTACTGTTGGTAGTGCAGCTTCACAATGCCAGAAGTGTTTCCAACCTGGGCATTGGACATATGAATGTAAGAATGAACGTGTATACATCTCAAGGCCCTCTAGGACTCAGCAACTCAAAAATCCTAAACTGAAGATGAAGGTGTCACTATCCTATGATCTGGATGGTCCAGATCCAGATACTAAAAAGGAAGAGAAGAGTGAAAAGCTGTCGAAGAAAAGCAAGAGGAAACATAGGCGAGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

169

Amino Acids

19.04

Weight (kDa)

10.06

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_3 PF13917 93 - 129 7.7e-23 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 165
AccI GTMKAC 1 cut(s) 345
AciI CCGC 1 cut(s) 33
AclWI GGATC 2 cut(s) 53, 428
AcuI CTGAAG 2 cut(s) 269, 413
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 165
AflIII ACRYGT 1 cut(s) 340
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 3 cut(s) 89, 281, 469
AluI AGCT 3 cut(s) 89, 281, 469
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 2 cut(s) 184, 220
AlwI GGATC 2 cut(s) 53, 428
AoxI GGCC 3 cut(s) 30, 57, 356
ApeKI GCWGC 9 cut(s) 35, 68, 104, 107, 110, 113, 116, 278, 503
Asp700I GAANNNNTTC 1 cut(s) 299
AspS9I GGNCC 3 cut(s) 155, 357, 428
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 2 cut(s) 155, 428
BaeI ACNNNNGTAYC 2 cut(s) 182, 215
BanII GRGCYC 1 cut(s) 91
BarI GAAGNNNNNNTAC 2 cut(s) 265, 297
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 8 cut(s) 47, 55, 91, 94, 97, 100, 103, 290
BccI CCATC 2 cut(s) 159, 419
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 2 cut(s) 184, 220
BfaI CTAG 1 cut(s) 363
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 2 cut(s) 155, 428
BmgT120I GGNCC 3 cut(s) 155, 357, 428
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 239
BmuI ACTGGG 1 cut(s) 239
Bpu10I CCTNAGC 3 cut(s) 27, 54, 90
BpuEI CTTGAG 2 cut(s) 82, 337
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 4 cut(s) 41, 68, 104, 383
BseNI ACTGG 1 cut(s) 234
BseXI GCAGC 8 cut(s) 47, 55, 91, 94, 97, 100, 103, 290
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 3 cut(s) 32, 59, 358
BsiHKAI GWGCWC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 2 cut(s) 184, 220
BsnI GGCC 3 cut(s) 32, 59, 358
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 3 cut(s) 45, 418, 433
BspACI CCGC 1 cut(s) 33
BspANI GGCC 3 cut(s) 32, 59, 358
BspCNI CTCAG 4 cut(s) 40, 67, 103, 382
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 2 cut(s) 53, 428
BsrI ACTGG 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 3 cut(s) 45, 418, 433
BssNAI GTATAC 1 cut(s) 346
Bst1107I GTATAC 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 3 cut(s) 12, 447, 452
BstC8I GCNNGC 1 cut(s) 501
BstDEI CTNAG 5 cut(s) 27, 54, 80, 90, 369
BstF5I GGATG 1 cut(s) 430
BstKTI GATC 3 cut(s) 48, 421, 436
BstMAI GTCTC 2 cut(s) 184, 220
BstMBI GATC 3 cut(s) 45, 418, 433
BstMWI GCNNNNNNNGC 6 cut(s) 32, 65, 101, 110, 113, 116
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstV1I GCAGC 8 cut(s) 47, 55, 91, 94, 97, 100, 103, 290
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BstZ17I GTATAC 1 cut(s) 346
BsuRI GGCC 3 cut(s) 32, 59, 358
BtsCI GGATG 1 cut(s) 430
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 501
Cfr13I GGNCC 3 cut(s) 155, 357, 428
Csp6I GTAC 1 cut(s) 210
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 5 cut(s) 27, 54, 80, 90, 369
DpnI GATC 3 cut(s) 47, 420, 435
DpnII GATC 3 cut(s) 45, 418, 433
Eam1104I CTCTTC 3 cut(s) 12, 447, 452
EarI CTCTTC 3 cut(s) 12, 447, 452
Ecl136II GAGCTC 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 155, 428
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 269, 413
EcoICRI GAGCTC 1 cut(s) 89
EcoO109I RGGNCCY 2 cut(s) 155, 357
EcoRII CCWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 91
FaiI YATR 7 cut(s) 138, 322, 324, 346, 417, 495, 508
FauNDI CATATG 1 cut(s) 322
FblI GTMKAC 1 cut(s) 345
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 1 cut(s) 363
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 3 cut(s) 32, 59, 358
HinfI GANTC 1 cut(s) 367
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 144, 204
Hpy188III TCNNGA 3 cut(s) 422, 431, 437
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 5 cut(s) 16, 139, 146, 244, 394
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 65, 101, 110, 113, 116
HpyF3I CTNAG 5 cut(s) 27, 54, 80, 90, 369
HpySE526I ACGT 1 cut(s) 340
Kzo9I GATC 3 cut(s) 45, 418, 433
Lsp1109I GCAGC 8 cut(s) 47, 55, 91, 94, 97, 100, 103, 290
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 405
MalI GATC 3 cut(s) 47, 420, 435
MboI GATC 3 cut(s) 45, 418, 433
MboII GAAGA 6 cut(s) 29, 161, 406, 464, 469, 487
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 91
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 2 cut(s) 370, 480
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 6 cut(s) 32, 65, 101, 110, 113, 116
NdeI CATATG 1 cut(s) 322
NdeII GATC 3 cut(s) 45, 418, 433
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 405
PceI AGGCCT 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 165
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 3 cut(s) 155, 357, 428
PspPPI RGGWCCY 1 cut(s) 155
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 325
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 1 cut(s) 129
Sau3AI GATC 3 cut(s) 45, 418, 433
Sau96I GGNCC 3 cut(s) 155, 357, 428
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 91
SetI ASST 8 cut(s) 79, 91, 249, 283, 310, 343, 405, 471
SinI GGWCC 2 cut(s) 155, 428
SmiMI CAYNNNNRTG 1 cut(s) 325
SmlI CTYRAG 2 cut(s) 61, 352
SmoI CTYRAG 2 cut(s) 61, 352
SseBI AGGCCT 1 cut(s) 59
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 1 cut(s) 91
StuI AGGCCT 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 343
TaqI TCGA 3 cut(s) 5, 85, 473
TatI WGTACW 1 cut(s) 209
TauI GCSGC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 405
TseI GCWGC 9 cut(s) 35, 68, 104, 107, 110, 113, 116, 278, 503
Tsp45I GTSAC 1 cut(s) 405
TspDTI ATGAA 3 cut(s) 339, 351, 413
TspRI CASTG 1 cut(s) 228
Van91I CCANNNNNTGG 1 cut(s) 165
VpaK11BI GGWCC 2 cut(s) 155, 428
XmiI GTMKAC 1 cut(s) 345
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.