Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007741

Physical Location & Seq

Genomic Coordinates Forward (+)

5225989 .. 5229004

Gene Structure 3016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G073200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCAAGTAAGAAAGAAGAAAAAGCTGAGGCTGCTGCTGAAAGGATCAAGGCTGCAGCCTTGACTGCTGCAAAAGGTCTTAGTCGAGCTCAGGCTGAAAGGGCGGCAGCTGCTGCTGCCCGCAATGTTAATGCCTATGGGCAGAAGGAAGAAGGACCCAGCAGATGGCAGGAGAAAAGGGAAGCCAAGAGACAGATGTATTTGATGAGTACTGAAAAGGCAGTGAGATTGGGTGAACGAAAAGACCTCAAGTCAAATGTATCTACCATTGCTGGTGCAGCTTCACAATGCCAGAAGTGTTATCAGCCCGGGCATTGGACATATGAATGCAAGAACGAACGTGTTTACATTTCGCGACCGTCTAGGACCCAGCAACTCAAAAATCCTAAACTAAAGATGAAGGTCTCAGAATCCTACGATTTGGATAATCCAGATAATATTAACAAGGAAGAGAAGAGTGAAAAGCAGTCAAAGAAAAGCAAGAGGAAGCATCGGGCAACTTCTGATTCTGGCAGTGATAGTGAGGCTTCAGTGTTTGATACTGATGATAGTGGGGCATCATCAGTTACAGGATCTGATTATTCTTCAGAGGAGTCTAGTTCAGATTACAGTTCATCTTCTGATTCAGAAGAGGAAAGGAAGAGGCTCAGAAGGAAGAAAAAGAAGCAAAAGATGGGAAGGCGGCGTAGAAGGTACAGCTCATCATCTGAATCTTCTGAGACAGAGTCAGCTTCTGAATCCGATTCTGATGATAGGAGGAGCCGGAGGAAGAGCAGGAGACACAGCAGAAAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

266

Amino Acids

30.0

Weight (kDa)

9.86

Isoelectric Point (pI)

88.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49400
fragaria_vesca	FvH4_4g19461
malus_domestica	MD13G1156300.v1.1 MD16G1157200.v1.1
prunus_persica	Prupe.1G073200_v2.0.a1 Prupe.1G073200_v2.0.a1 Prupe.1G073200_v2.0.a1 Prupe.1G122100_v2.0.a1
pyrus_communis	pycom13g13370 pycom16g13220
rosa_chinensis	RchiOBHm_Chr4g0424571
rosa_laevigata	RLG00000007456
rosa_multiflora	Rmu_sc0002603.1_g000020 Rmu_sc0003819.1_g000023 Rmu_sc0003942.1_g000010
rosa_roxburghii	Rroxscaffold_2G00147270 Rroxscaffold_5G00366490
rosa_rugosa	Rorug02G0043100 Rorug04G0198000
rosa_samantha	Rh4AG254600 Rh4BG260100 Rh4CG271500 Rh4DG254800
rosa_wichuraiana	Rw4G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccII	CGCG	1 cut(s)	355
AciI	CCGC	3 cut(s)	104, 121, 682
AclWI	GGATC	2 cut(s)	53, 580
AcuI	CTGAAG	2 cut(s)	513, 570
AfaI	GTAC	2 cut(s)	211, 695
AfiI	CCNNNNNNNGG	2 cut(s)	165, 315
AflIII	ACRYGT	1 cut(s)	340
AhdI	GACNNNNNGTC	1 cut(s)	250
AluBI	AGCT	6 cut(s)	26, 89, 110, 281, 699, 731
AluI	AGCT	6 cut(s)	26, 89, 110, 281, 699, 731
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	4 cut(s)	184, 409, 713, 772
AlwI	GGATC	2 cut(s)	53, 580
AlwNI	CAGNNNCTG	3 cut(s)	113, 575, 734
Ama87I	CYCGRG	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	155, 366
AsuC2I	CCSGG	2 cut(s)	309, 310
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	155, 366
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	91
BbvCI	CCTCAGC	1 cut(s)	27
BccI	CCATC	2 cut(s)	159, 667
BcnI	CCSGG	2 cut(s)	309, 310
BcoDI	GTCTC	4 cut(s)	184, 409, 713, 772
BfaI	CTAG	2 cut(s)	363, 597
BfmI	CTRYAG	1 cut(s)	54
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	309, 310
Bme18I	GGWCC	2 cut(s)	155, 366
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	155, 366
BmiI	GGNNCC	3 cut(s)	157, 368, 761
BmrFI	CCNGG	2 cut(s)	309, 310
BmsI	GCATC	2 cut(s)	499, 566
Bpu10I	CCTNAGC	2 cut(s)	27, 90
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	2 cut(s)	309, 310
BsaI	GGTCTC	1 cut(s)	409
BsaJI	CCNNGG	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 315
Bse3DI	GCAATG	2 cut(s)	130, 267
BseDI	CCNNGG	1 cut(s)	308
BseLI	CCNNNNNNNGG	2 cut(s)	165, 315
BseMI	GCAATG	2 cut(s)	130, 267
BseMII	CTCAG	5 cut(s)	18, 104, 420, 661, 708
BseRI	GAGGAG	2 cut(s)	605, 772
BseYI	CCCAGC	2 cut(s)	158, 369
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	355
Bsh1285I	CGRYCG	1 cut(s)	359
BsiEI	CGRYCG	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	309, 763
BslI	CCNNNNNNNGG	2 cut(s)	165, 315
BsmAI	GTCTC	4 cut(s)	184, 409, 713, 772
BsmI	GAATGC	1 cut(s)	332
Bso31I	GGTCTC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	45, 572
Bsp68I	TCGCGA	1 cut(s)	355
BspACI	CCGC	3 cut(s)	104, 121, 682
BspCNI	CTCAG	5 cut(s)	19, 103, 419, 660, 709
BspFNI	CGCG	1 cut(s)	355
BspLI	GGNNCC	3 cut(s)	157, 368, 761
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	2 cut(s)	53, 580
BspQI	GCTCTTC	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	409
BsrDI	GCAATG	2 cut(s)	130, 267
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	2 cut(s)	45, 572
Bst4CI	ACNGT	2 cut(s)	360, 611
Bst6I	CTCTTC	5 cut(s)	444, 449, 624, 635, 764
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	6 cut(s)	27, 80, 90, 406, 647, 717
BstFNI	CGCG	1 cut(s)	355
BstKTI	GATC	2 cut(s)	48, 575
BstMAI	GTCTC	4 cut(s)	184, 409, 713, 772
BstMBI	GATC	2 cut(s)	45, 572
BstMCI	CGRYCG	1 cut(s)	359
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 65, 101, 110, 113, 116, 278
BstSCI	CCNGG	2 cut(s)	307, 308
BstSFI	CTRYAG	1 cut(s)	54
BstUI	CGCG	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
BtsI	GCAGTG	2 cut(s)	228, 520
BtsIMutI	CAGTG	3 cut(s)	228, 520, 537
BtuMI	TCGCGA	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	3 cut(s)	113, 575, 734
Cfr13I	GGNCC	2 cut(s)	155, 366
Cfr9I	CCCGGG	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	210, 694
CviQI	GTAC	2 cut(s)	210, 694
DdeI	CTNAG	6 cut(s)	27, 80, 90, 406, 647, 717
DpnI	GATC	2 cut(s)	47, 574
DpnII	GATC	2 cut(s)	45, 572
DriI	GACNNNNNGTC	1 cut(s)	250
Eam1104I	CTCTTC	5 cut(s)	444, 449, 624, 635, 764
Eam1105I	GACNNNNNGTC	1 cut(s)	250
EarI	CTCTTC	5 cut(s)	444, 449, 624, 635, 764
Ecl136II	GAGCTC	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	409
Eco47I	GGWCC	2 cut(s)	155, 366
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	2 cut(s)	513, 570
Eco88I	CYCGRG	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	89
EcoO109I	RGGNCCY	2 cut(s)	155, 366
EcoT38I	GRGCYC	1 cut(s)	91
FaiI	YATR	3 cut(s)	138, 322, 324
FauI	CCCGC	1 cut(s)	128
FauNDI	CATATG	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	91
FspBI	CTAG	2 cut(s)	363, 597
GsaI	CCCAGC	2 cut(s)	162, 373
HapII	CCGG	2 cut(s)	309, 763
HinfI	GANTC	8 cut(s)	410, 506, 593, 623, 710, 725, 737, 743
HpaII	CCGG	2 cut(s)	309, 763
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	236, 346
Hpy188III	TCNNGA	2 cut(s)	354, 431
Hpy8I	GTNNAC	2 cut(s)	236, 346
HpyAV	CCTTC	6 cut(s)	139, 146, 394, 645, 672, 684
HpyCH4III	ACNGT	2 cut(s)	360, 611
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	56, 71, 278, 330
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 65, 101, 110, 113, 116, 278
HpyF3I	CTNAG	6 cut(s)	27, 80, 90, 406, 647, 717
HpySE526I	ACGT	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	45, 572
LguI	GCTCTTC	1 cut(s)	764
LmnI	GCTCC	1 cut(s)	759
LweI	GCATC	2 cut(s)	499, 566
MaeI	CTAG	2 cut(s)	363, 597
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	2 cut(s)	47, 574
MboI	GATC	2 cut(s)	45, 572
MflI	RGATCY	1 cut(s)	572
MhlI	GDGCHC	1 cut(s)	91
MlyI	GAGTC	2 cut(s)	602, 734
MnlI	CCTC	9 cut(s)	22, 257, 477, 517, 583, 625, 636, 750, 759
MseI	TTAA	3 cut(s)	129, 441, 796
MslI	CAYNNNNRTG	1 cut(s)	325
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	2 cut(s)	309, 763
MspR9I	CCNGG	2 cut(s)	309, 310
Mva1269I	GAATGC	1 cut(s)	332
MvnI	CGCG	1 cut(s)	355
MwoI	GCNNNNNNNGC	7 cut(s)	32, 65, 101, 110, 113, 116, 278
NciI	CCSGG	2 cut(s)	309, 310
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	45, 572
NlaIV	GGNNCC	3 cut(s)	157, 368, 761
NruI	TCGCGA	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	764
PctI	GAATGC	1 cut(s)	332
PfeI	GAWTC	6 cut(s)	410, 506, 623, 710, 737, 743
PflFI	GACNNNGTC	1 cut(s)	724
PflMI	CCANNNNNTGG	1 cut(s)	165
PleI	GAGTC	2 cut(s)	601, 733
PpsI	GAGTC	2 cut(s)	601, 733
PpuMI	RGGWCCY	2 cut(s)	155, 366
Psp124BI	GAGCTC	1 cut(s)	91
Psp5II	RGGWCCY	2 cut(s)	155, 366
PspFI	CCCAGC	2 cut(s)	158, 369
PspN4I	GGNNCC	3 cut(s)	157, 368, 761
PspPI	GGNCC	2 cut(s)	155, 366
PspPPI	RGGWCCY	2 cut(s)	155, 366
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	3 cut(s)	113, 575, 734
PsuI	RGATCY	1 cut(s)	572
PsyI	GACNNNGTC	1 cut(s)	724
PvuII	CAGCTG	1 cut(s)	110
RruI	TCGCGA	1 cut(s)	355
RsaI	GTAC	2 cut(s)	211, 695
RsaNI	GTAC	2 cut(s)	210, 694
RseI	CAYNNNNRTG	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	764
SaqAI	TTAA	3 cut(s)	129, 441, 796
Sau3AI	GATC	2 cut(s)	45, 572
Sau96I	GGNCC	2 cut(s)	155, 366
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	2 cut(s)	602, 734
ScrFI	CCNGG	2 cut(s)	309, 310
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	2 cut(s)	499, 566
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	2 cut(s)	155, 366
SmaI	CCCGGG	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SrfI	GCCCGGGC	1 cut(s)	310
SsiI	CCGC	3 cut(s)	104, 121, 682
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	2 cut(s)	363, 597
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	307, 308
TaaI	ACNGT	2 cut(s)	360, 611
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	85
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	2 cut(s)	107, 685
TfiI	GAWTC	6 cut(s)	410, 506, 623, 710, 737, 743
Tru1I	TTAA	3 cut(s)	129, 441, 796
Tru9I	TTAA	3 cut(s)	129, 441, 796
TscAI	CASTG	3 cut(s)	228, 520, 537
TspDTI	ATGAA	3 cut(s)	339, 413, 603
TspMI	CCCGGG	1 cut(s)	308
TspRI	CASTG	3 cut(s)	228, 520, 537
Tth111I	GACNNNGTC	1 cut(s)	724
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	2 cut(s)	155, 366
XmaI	CCCGGG	1 cut(s)	308
XspI	CTAG	2 cut(s)	363, 597
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.