Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003819.1

Orthogroup ID

OG0007741

Physical Location & Seq

Genomic Coordinates Reverse (-)

91417 .. 92637

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003819.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgttgagtaagaaagaagagaagatcatcaacaaggaaataccggctaatgtggtttttgaggacgacaacgttcttgcttttagggacattagtccccaggctccaacacacattttgatcattcccgaagttaaagatggcttaactggattgtcgaaggctgaagagaggcactgtgagattcttgatctgcttctctacactgccaagcttgttgctaaacaggaaggcctggaggatgggtttaggattgtgattaatgatgggccaaaagcatgtcaatcggccttaagtgctgcaaaaggtcttagtcgagctcaggttgaaagggctgctgctgctgcccgaaatgttaatgcttctaggcagaaggaagaaggacctagcaaatggcaggagaaaagagaagccaagagacagatgtatttgatgagtactaaaaaggcagtgagactgggcgaaaggaaagatctgaaggctaatgtatgtactgttggtagtgcagcttcacaatgccagaagtgtttccaacctgggcattggacgtacaaatgtaagaatgaacgtgtttacatctcaaggccctctaggactcagcaactcaaaaatcctaaactgaagatgaaggtgtcactattcgtagttttggatattccatatccagatactaaaaacgaagagaatagtgaaaagcagtcgaagaaaagcaagaggaaacataggcgaggttctgattctggtattgatagtgaagctttagtttttgagactgatagtgggaaatcatcagttacaggttctgattattcttctgaagggagcagtccagattacagttcatcatctgatcttgtggaggagagaaggcaccggaggaagaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

295

Amino Acids

33.06

Weight (kDa)

9.38

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49400
fragaria_vesca	FvH4_4g19461
malus_domestica	MD13G1156300.v1.1 MD16G1157200.v1.1
prunus_persica	Prupe.1G073200_v2.0.a1 Prupe.1G073200_v2.0.a1 Prupe.1G073200_v2.0.a1 Prupe.1G122100_v2.0.a1
pyrus_communis	pycom13g13370 pycom16g13220
rosa_chinensis	RchiOBHm_Chr4g0424571
rosa_laevigata	RLG00000007456
rosa_multiflora	Rmu_sc0002603.1_g000020 Rmu_sc0003819.1_g000023 Rmu_sc0003942.1_g000010
rosa_roxburghii	Rroxscaffold_2G00147270 Rroxscaffold_5G00366490
rosa_rugosa	Rorug02G0043100 Rorug04G0198000
rosa_samantha	Rh4AG254600 Rh4BG260100 Rh4CG271500 Rh4DG254800
rosa_wichuraiana	Rw4G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	870
AclI	AACGTT	1 cut(s)	72
AcuI	CTGAAG	4 cut(s)	186, 497, 641, 837
AfaI	GTAC	3 cut(s)	439, 493, 551
AflII	CTTAAG	1 cut(s)	292
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	3 cut(s)	99, 234, 535
AluBI	AGCT	4 cut(s)	214, 320, 509, 758
AluI	AGCT	4 cut(s)	214, 320, 509, 758
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	3 cut(s)	412, 448, 764
AlwNI	CAGNNNCTG	1 cut(s)	803
AoxI	GGCC	4 cut(s)	232, 269, 288, 584
ApeKI	GCWGC	6 cut(s)	299, 335, 338, 341, 344, 506
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	527
AspS9I	GGNCC	3 cut(s)	269, 383, 585
AvaII	GGWCC	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	870
BanII	GRGCYC	1 cut(s)	322
BarI	GAAGNNNNNNTAC	2 cut(s)	493, 525
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	6 cut(s)	286, 322, 325, 328, 331, 518
BccI	CCATC	3 cut(s)	134, 236, 260
BcgI	CGANNNNNNTGC	2 cut(s)	267, 301
BciT130I	CCWGG	3 cut(s)	101, 236, 537
BclI	TGATCA	1 cut(s)	120
BcoDI	GTCTC	3 cut(s)	412, 448, 764
BfaI	CTAG	3 cut(s)	366, 387, 591
BfrI	CTTAAG	1 cut(s)	292
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	6 cut(s)	300, 336, 339, 342, 345, 507
BlsI	GCNGC	6 cut(s)	301, 337, 340, 343, 346, 508
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	3 cut(s)	101, 236, 537
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	3 cut(s)	269, 383, 585
BmiI	GGNNCC	2 cut(s)	105, 872
BmrFI	CCNGG	3 cut(s)	101, 236, 537
BmrI	ACTGGG	1 cut(s)	467
BmuI	ACTGGG	1 cut(s)	467
BoxI	GACNNNNGTC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	565
BsaJI	CCNNGG	2 cut(s)	99, 536
BsaWI	WCCGGW	1 cut(s)	873
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	154, 462
BseBI	CCWGG	3 cut(s)	101, 236, 537
BseDI	CCNNGG	2 cut(s)	99, 536
BseGI	GGATG	1 cut(s)	247
BseMII	CTCAG	2 cut(s)	335, 611
BseNI	ACTGG	2 cut(s)	154, 462
BseRI	GAGGAG	1 cut(s)	875
BseXI	GCAGC	6 cut(s)	286, 322, 325, 328, 331, 518
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	4 cut(s)	234, 271, 290, 586
BshNI	GGYRCC	1 cut(s)	870
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	2 cut(s)	44, 874
BslFI	GGGAC	2 cut(s)	81, 101
BsmAI	GTCTC	3 cut(s)	412, 448, 764
BsmFI	GGGAC	2 cut(s)	81, 101
BsnI	GGCC	4 cut(s)	234, 271, 290, 586
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	24, 120, 190, 472, 850
BspANI	GGCC	4 cut(s)	234, 271, 290, 586
BspCNI	CTCAG	2 cut(s)	334, 610
BspLI	GGNNCC	2 cut(s)	105, 872
BspT107I	GGYRCC	1 cut(s)	870
BspTI	CTTAAG	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	154, 462
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	99, 536
BssMI	GATC	5 cut(s)	24, 120, 190, 472, 850
Bst2UI	CCWGG	3 cut(s)	101, 236, 537
Bst4CI	ACNGT	3 cut(s)	179, 496, 839
Bst6I	CTCTTC	3 cut(s)	12, 162, 675
BstAFI	CTTAAG	1 cut(s)	292
BstDEI	CTNAG	3 cut(s)	311, 321, 597
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	5 cut(s)	27, 123, 193, 475, 853
BstMAI	GTCTC	3 cut(s)	412, 448, 764
BstMBI	GATC	5 cut(s)	24, 120, 190, 472, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 341, 344
BstNI	CCWGG	3 cut(s)	101, 236, 537
BstNSI	RCATGY	1 cut(s)	282
BstPAI	GACNNNNGTC	1 cut(s)	93
BstSCI	CCNGG	3 cut(s)	99, 234, 535
BstV1I	GCAGC	6 cut(s)	286, 322, 325, 328, 331, 518
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	4 cut(s)	234, 271, 290, 586
BtsCI	GGATG	1 cut(s)	247
BtsI	GCAGTG	2 cut(s)	204, 456
BtsIMutI	CAGTG	3 cut(s)	175, 204, 456
CaiI	CAGNNNCTG	1 cut(s)	803
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	3 cut(s)	269, 383, 585
Csp6I	GTAC	3 cut(s)	438, 492, 550
CviAII	CATG	1 cut(s)	279
CviQI	GTAC	3 cut(s)	438, 492, 550
DdeI	CTNAG	3 cut(s)	311, 321, 597
DpnI	GATC	5 cut(s)	26, 122, 192, 474, 852
DpnII	GATC	5 cut(s)	24, 120, 190, 472, 850
Eam1104I	CTCTTC	3 cut(s)	12, 162, 675
EarI	CTCTTC	3 cut(s)	12, 162, 675
Ecl136II	GAGCTC	1 cut(s)	320
Eco147I	AGGCCT	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	383
Eco53kI	GAGCTC	1 cut(s)	320
Eco57I	CTGAAG	4 cut(s)	186, 497, 641, 837
EcoICRI	GAGCTC	1 cut(s)	320
EcoO109I	RGGNCCY	2 cut(s)	383, 585
EcoRII	CCWGG	3 cut(s)	99, 234, 535
EcoT38I	GRGCYC	1 cut(s)	322
FaeI	CATG	1 cut(s)	282
FaiI	YATR	4 cut(s)	280, 490, 661, 723
FaqI	GGGAC	2 cut(s)	81, 101
FatI	CATG	1 cut(s)	278
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	6 cut(s)	300, 336, 339, 342, 345, 507
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	6 cut(s)	300, 336, 339, 342, 345, 507
FspBI	CTAG	3 cut(s)	366, 387, 591
GluI	GCNGC	6 cut(s)	300, 336, 339, 342, 345, 507
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	4 cut(s)	234, 271, 290, 586
HapII	CCGG	2 cut(s)	44, 874
Hin1II	CATG	1 cut(s)	282
HindIII	AAGCTT	2 cut(s)	212, 756
HinfI	GANTC	3 cut(s)	184, 595, 737
HpaII	CCGG	2 cut(s)	44, 874
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	5 cut(s)	477, 736, 805, 817, 850
Hpy188III	TCNNGA	4 cut(s)	128, 188, 665, 830
Hpy8I	GTNNAC	1 cut(s)	574
HpyAV	CCTTC	8 cut(s)	154, 224, 367, 374, 472, 622, 812, 861
HpyCH4III	ACNGT	3 cut(s)	179, 496, 839
HpyCH4IV	ACGT	3 cut(s)	72, 548, 568
HpyCH4V	TGCA	2 cut(s)	302, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 341, 344
HpyF3I	CTNAG	3 cut(s)	311, 321, 597
HpySE526I	ACGT	3 cut(s)	72, 548, 568
Hsp92II	CATG	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	5 cut(s)	24, 120, 190, 472, 850
LmnI	GCTCC	2 cut(s)	109, 822
Lsp1109I	GCAGC	6 cut(s)	286, 322, 325, 328, 331, 518
MaeI	CTAG	3 cut(s)	366, 387, 591
MaeII	ACGT	3 cut(s)	72, 548, 568
MaeIII	GTNAC	2 cut(s)	633, 793
MalI	GATC	5 cut(s)	26, 122, 192, 474, 852
MboI	GATC	5 cut(s)	24, 120, 190, 472, 850
MboII	GAAGA	8 cut(s)	29, 34, 179, 389, 634, 692, 715, 804
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	322
MlyI	GAGTC	1 cut(s)	589
MmeI	TCCRAC	2 cut(s)	131, 556
MnlI	CCTC	8 cut(s)	55, 165, 232, 598, 708, 722, 853, 870
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	5 cut(s)	135, 146, 261, 293, 357
MspCI	CTTAAG	1 cut(s)	292
MspI	CCGG	2 cut(s)	44, 874
MspR9I	CCNGG	3 cut(s)	101, 236, 537
MvaI	CCWGG	3 cut(s)	101, 236, 537
MwoI	GCNNNNNNNGC	3 cut(s)	296, 341, 344
NdeII	GATC	5 cut(s)	24, 120, 190, 472, 850
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	2 cut(s)	105, 872
NmuCI	GTSAC	1 cut(s)	633
NspI	RCATGY	1 cut(s)	282
PceI	AGGCCT	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	184, 737
PkrI	GCNGC	6 cut(s)	301, 337, 340, 343, 346, 508
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
PpuMI	RGGWCCY	1 cut(s)	383
PshAI	GACNNNNGTC	1 cut(s)	93
PshBI	ATTAAT	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	322
Psp1406I	AACGTT	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	383
Psp6I	CCWGG	3 cut(s)	99, 234, 535
PspGI	CCWGG	3 cut(s)	99, 234, 535
PspN4I	GGNNCC	2 cut(s)	105, 872
PspPI	GGNCC	3 cut(s)	269, 383, 585
PspPPI	RGGWCCY	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	803
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	3 cut(s)	439, 493, 551
RsaNI	GTAC	3 cut(s)	438, 492, 550
SacI	GAGCTC	1 cut(s)	322
SaqAI	TTAA	5 cut(s)	135, 146, 261, 293, 357
SatI	GCNGC	6 cut(s)	300, 336, 339, 342, 345, 507
Sau3AI	GATC	5 cut(s)	24, 120, 190, 472, 850
Sau96I	GGNCC	3 cut(s)	269, 383, 585
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	3 cut(s)	101, 236, 537
SduI	GDGCHC	1 cut(s)	322
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	292, 580
SmoI	CTYRAG	2 cut(s)	292, 580
SseBI	AGGCCT	1 cut(s)	234
SspMI	CTAG	3 cut(s)	366, 387, 591
SstI	GAGCTC	1 cut(s)	322
StuI	AGGCCT	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	99, 234, 535
TaaI	ACNGT	3 cut(s)	179, 496, 839
TaiI	ACGT	3 cut(s)	75, 551, 571
TaqI	TCGA	3 cut(s)	158, 316, 701
TatI	WGTACW	2 cut(s)	437, 491
TfiI	GAWTC	2 cut(s)	184, 737
Tru1I	TTAA	5 cut(s)	135, 146, 261, 293, 357
Tru9I	TTAA	5 cut(s)	135, 146, 261, 293, 357
TscAI	CASTG	3 cut(s)	182, 211, 456
TseFI	GTSAC	1 cut(s)	633
TseI	GCWGC	6 cut(s)	299, 335, 338, 341, 344, 506
Tsp45I	GTSAC	1 cut(s)	633
TspDTI	ATGAA	3 cut(s)	579, 641, 831
TspRI	CASTG	3 cut(s)	182, 211, 456
Vha464I	CTTAAG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	383
VspI	ATTAAT	1 cut(s)	261
XceI	RCATGY	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	3 cut(s)	366, 387, 591
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.