Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008493

Physical Location & Seq

Genomic Coordinates Reverse (-)

20509115 .. 20510810

Gene Structure 1696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCAACGAGCAGTGCGGCTTCTGTTGATATGGAAGATATTCAGACTGTTGATCTCATGTCTGAGCTTCTTCGCCGTATGAAATGTGCCTCTAAACCTGACAAACGTCTCGTTTTCATCGGTCCACCTGGTTCAGGGAAAGGTACACAGTCTCCGGTCATAAAGGATGAGTTTTGTTTGTGTCATTTGTCTACTGGTGACATGCTTAGAGCTGCTGTTGCTGCTAAGACTCCTCTTGGTGTGAAGGCAAAGGAAGCAATGGATAAGGGAGAGCTTGTTTCTGATGACTTGGTTGTTGGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGGTTTCATTCTTGATGGGTTCCCGCGGACTGTGACTCAAGCAGAGAAGCTTGATGAGATGCTTAATAGAAGGGGAGCTCAGATAGATAAGGTGCTTAATTTTGCGATCGATGATTCGGTTCTCGAAGAAAGAATTACTGGAAGGTGGATTCACCCTTCAAGTGGAAGAAGCTATCATACTAAATTCGCACCTCCTAAAGTTCCAGGAGTCGATGATCTGACTGGAGAGCCATTGATTCAACGTAAAGATGACAATGCGGATGTTCTTAGATCAAGGCTAGATGCATTCCACAAGCAGACGCAACCGGTAATTGACTATTATGCGAAGAAGGAGAATCTGGTGAACATACCGGCAGAGAAGGCCCCGGAAGAGGTTACAAAAGTGGTGAAGAAGGTTGTGTCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0031090 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0046940 GO:0050145 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK ADK_lid

Protein Analysis

248

Amino Acids

27.34

Weight (kDa)

6.91

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	40 - 216	2.4e-55	Adenylate kinase
AAA_17	PF13207	40 - 161	7.8e-26	AAA domain
ADK_lid	PF05191	161 - 196	3.2e-17	Adenylate kinase, active site lid

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50370 AT5G50370 AT5G63400 AT5G63400
fragaria_vesca	FvH4_5g07870
malus_domestica	MD06G1145300.v1.1 MD14G1160000.v1.1
prunus_persica	Prupe.5G153600_v2.0.a1 Prupe.5G153600_v2.0.a1
pyrus_communis	pycom06g13460 pycom14g13350
rosa_chinensis	RchiOBHm_Chr7g0190591
rosa_laevigata	RLG00000004512
rosa_multiflora	Rmu_co8305173.1_g000001 Rmu_sc0006709.1_g000012
rosa_roxburghii	Rroxscaffold_3G00264480
rosa_rugosa	Rorug06G0505500 Rorug06G0505600
rosa_samantha	Rh7AG112100 Rh7BG114900
rosa_wichuraiana	Rw4G010280 Rw7G009780 Rw7G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	330
AccI	GTMKAC	2 cut(s)	191, 740
AccII	CGCG	1 cut(s)	364
AciI	CCGC	4 cut(s)	17, 362, 364, 596
AcsI	RAATTY	1 cut(s)	521
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	3 cut(s)	134, 500, 709
AgeI	ACCGGT	1 cut(s)	643
AgsI	TTSAA	2 cut(s)	498, 578
AjnI	CCWGG	2 cut(s)	127, 541
AluBI	AGCT	6 cut(s)	67, 212, 274, 388, 416, 510
AluI	AGCT	6 cut(s)	67, 212, 274, 388, 416, 510
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	2 cut(s)	113, 156
AoxI	GGCC	1 cut(s)	699
ApeKI	GCWGC	2 cut(s)	212, 221
ApoI	RAATTY	1 cut(s)	521
AsiGI	ACCGGT	1 cut(s)	643
Asp700I	GAANNNNTTC	2 cut(s)	39, 341
AspS9I	GGNCC	2 cut(s)	122, 700
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	4 cut(s)	209, 482, 691, 736
AvaII	GGWCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	418
BarI	GAAGNNNNNNTAC	2 cut(s)	499, 531
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	199, 208
BccI	CCATC	1 cut(s)	347
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	2 cut(s)	129, 543
BcnI	CCSGG	1 cut(s)	704
BcoDI	GTCTC	2 cut(s)	113, 156
BfaI	CTAG	1 cut(s)	617
BisI	GCNGC	3 cut(s)	18, 213, 222
BlsI	GCNGC	3 cut(s)	19, 214, 223
Bme1390I	CCNGG	3 cut(s)	129, 543, 704
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	122, 700
BmiI	GGNNCC	2 cut(s)	359, 702
BmrFI	CCNGG	3 cut(s)	129, 543, 704
BmsI	GCATC	2 cut(s)	387, 610
BoxI	GACNNNNGTC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	704
Bsa29I	ATCGAT	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	362, 702
BsaWI	WCCGGW	2 cut(s)	154, 643
BsaXI	ACNNNNNCTCC	4 cut(s)	136, 166, 261, 291
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 500, 709
Bse118I	RCCGGY	2 cut(s)	643, 688
Bse1I	ACTGG	3 cut(s)	199, 481, 565
Bse3DI	GCAATG	2 cut(s)	264, 321
BseBI	CCWGG	2 cut(s)	129, 543
BseCI	ATCGAT	1 cut(s)	447
BseDI	CCNNGG	2 cut(s)	362, 702
BseGI	GGATG	3 cut(s)	172, 313, 604
BseLI	CCNNNNNNNGG	3 cut(s)	134, 500, 709
BseMI	GCAATG	2 cut(s)	264, 321
BseMII	CTCAG	2 cut(s)	54, 431
BseNI	ACTGG	3 cut(s)	199, 481, 565
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	199, 208
Bsh1236I	CGCG	1 cut(s)	364
Bsh1285I	CGRYCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	701
BshTI	ACCGGT	1 cut(s)	643
BshVI	ATCGAT	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	4 cut(s)	155, 644, 689, 704
BslI	CCNNNNNNNGG	3 cut(s)	134, 500, 709
BsmAI	GTCTC	2 cut(s)	113, 156
BsmBI	CGTCTC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	4 cut(s)	52, 444, 553, 608
BspACI	CCGC	4 cut(s)	17, 362, 364, 596
BspANI	GGCC	1 cut(s)	701
BspCNI	CTCAG	2 cut(s)	55, 430
BspDI	ATCGAT	1 cut(s)	447
BspFNI	CGCG	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	359, 702
BsrDI	GCAATG	2 cut(s)	264, 321
BsrFI	RCCGGY	2 cut(s)	643, 688
BsrI	ACTGG	3 cut(s)	199, 481, 565
BssAI	RCCGGY	2 cut(s)	643, 688
BssECI	CCNNGG	2 cut(s)	362, 702
BssMI	GATC	4 cut(s)	52, 444, 553, 608
Bst2UI	CCWGG	2 cut(s)	129, 543
Bst4CI	ACNGT	3 cut(s)	49, 150, 370
Bst6I	CTCTTC	1 cut(s)	702
BstDEI	CTNAG	5 cut(s)	63, 206, 225, 417, 605
BstDSI	CCRYGG	1 cut(s)	362
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstF5I	GGATG	3 cut(s)	172, 313, 604
BstFNI	CGCG	1 cut(s)	364
BstKTI	GATC	4 cut(s)	55, 447, 556, 611
BstMAI	GTCTC	2 cut(s)	113, 156
BstMBI	GATC	4 cut(s)	52, 444, 553, 608
BstMCI	CGRYCG	1 cut(s)	447
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 221, 254, 698
BstNI	CCWGG	2 cut(s)	129, 543
BstNSI	RCATGY	1 cut(s)	205
BstPAI	GACNNNNGTC	1 cut(s)	105
BstSCI	CCNGG	3 cut(s)	127, 541, 702
BstUI	CGCG	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	199, 208
Bsu15I	ATCGAT	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	701
BsuTUI	ATCGAT	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	362
BtsCI	GGATG	3 cut(s)	172, 313, 604
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
Cfr10I	RCCGGY	2 cut(s)	643, 688
Cfr13I	GGNCC	2 cut(s)	122, 700
Cfr42I	CCGCGG	1 cut(s)	365
ClaI	ATCGAT	1 cut(s)	447
CseI	GACGC	1 cut(s)	646
CsiI	ACCWGGT	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	144
CspAI	ACCGGT	1 cut(s)	643
CviAII	CATG	4 cut(s)	58, 202, 304, 744
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	5 cut(s)	63, 206, 225, 417, 605
DpnI	GATC	4 cut(s)	54, 446, 555, 610
DpnII	GATC	4 cut(s)	52, 444, 553, 608
DrdI	GACNNNNNNGTC	1 cut(s)	330
DseDI	GACNNNNNNGTC	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
Ecl136II	GAGCTC	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	416
EcoNI	CCTNNNNNAGG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRII	CCWGG	2 cut(s)	127, 541
EcoT22I	ATGCAT	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	418
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	4 cut(s)	61, 205, 307, 747
FatI	CATG	4 cut(s)	57, 201, 303, 743
FauI	CCCGC	1 cut(s)	369
FblI	GTMKAC	2 cut(s)	191, 740
Fnu4HI	GCNGC	3 cut(s)	18, 213, 222
FokI	GGATG	3 cut(s)	179, 320, 611
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	3 cut(s)	18, 213, 222
FspBI	CTAG	1 cut(s)	617
GluI	GCNGC	3 cut(s)	18, 213, 222
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	1 cut(s)	701
HapII	CCGG	4 cut(s)	155, 644, 689, 704
HgaI	GACGC	1 cut(s)	646
Hin1II	CATG	4 cut(s)	61, 205, 307, 747
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	7 cut(s)	229, 373, 452, 487, 546, 574, 673
HpaII	CCGG	4 cut(s)	155, 644, 689, 704
HphI	GGTGA	4 cut(s)	209, 482, 691, 736
Hpy166II	GTNNAC	5 cut(s)	125, 146, 192, 682, 741
Hpy188I	TCNGA	6 cut(s)	45, 64, 283, 336, 420, 558
Hpy188III	TCNNGA	2 cut(s)	350, 461
Hpy8I	GTNNAC	5 cut(s)	125, 146, 192, 682, 741
HpyAV	CCTTC	7 cut(s)	238, 402, 474, 504, 661, 691, 724
HpyCH4III	ACNGT	3 cut(s)	49, 150, 370
HpyCH4IV	ACGT	2 cut(s)	106, 580
HpyCH4V	TGCA	1 cut(s)	623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 221, 254, 698
HpyF3I	CTNAG	5 cut(s)	63, 206, 225, 417, 605
HpySE526I	ACGT	2 cut(s)	106, 580
Hsp92II	CATG	4 cut(s)	61, 205, 307, 747
KspI	CCGCGG	1 cut(s)	365
Kzo9I	GATC	4 cut(s)	52, 444, 553, 608
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	2 cut(s)	199, 208
LweI	GCATC	2 cut(s)	387, 610
MabI	ACCWGGT	1 cut(s)	127
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	2 cut(s)	106, 580
MaeIII	GTNAC	3 cut(s)	197, 370, 712
MalI	GATC	4 cut(s)	54, 446, 555, 610
MboI	GATC	4 cut(s)	52, 444, 553, 608
MboII	GAAGA	7 cut(s)	47, 62, 476, 516, 676, 719, 739
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	4 cut(s)	436, 471, 521, 648
MlyI	GAGTC	3 cut(s)	223, 367, 555
MnlI	CCTC	4 cut(s)	100, 243, 540, 703
Mph1103I	ATGCAT	1 cut(s)	625
MroXI	GAANNNNTTC	2 cut(s)	39, 341
MseI	TTAA	2 cut(s)	402, 435
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	4 cut(s)	155, 644, 689, 704
MspR9I	CCNGG	3 cut(s)	129, 543, 704
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	2 cut(s)	129, 543
MvnI	CGCG	1 cut(s)	364
MwoI	GCNNNNNNNGC	4 cut(s)	218, 221, 254, 698
NciI	CCSGG	1 cut(s)	704
NdeII	GATC	4 cut(s)	52, 444, 553, 608
NlaIII	CATG	4 cut(s)	61, 205, 307, 747
NlaIV	GGNNCC	2 cut(s)	359, 702
NmuCI	GTSAC	2 cut(s)	197, 370
NsiI	ATGCAT	1 cut(s)	625
NspI	RCATGY	1 cut(s)	205
PctI	GAATGC	1 cut(s)	623
PdmI	GAANNNNTTC	2 cut(s)	39, 341
PfeI	GAWTC	4 cut(s)	452, 487, 574, 673
PfoI	TCCNGGA	1 cut(s)	541
PinAI	ACCGGT	1 cut(s)	643
PkrI	GCNGC	3 cut(s)	19, 214, 223
Ple19I	CGATCG	1 cut(s)	447
PleI	GAGTC	3 cut(s)	223, 367, 554
PpsI	GAGTC	3 cut(s)	223, 367, 554
PshAI	GACNNNNGTC	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	127, 541
PspGI	CCWGG	2 cut(s)	127, 541
PspN4I	GGNNCC	2 cut(s)	359, 702
PspPI	GGNCC	2 cut(s)	122, 700
PvuI	CGATCG	1 cut(s)	447
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	418
SacII	CCGCGG	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	402, 435
SatI	GCNGC	3 cut(s)	18, 213, 222
Sau3AI	GATC	4 cut(s)	52, 444, 553, 608
Sau96I	GGNCC	2 cut(s)	122, 700
SchI	GAGTC	3 cut(s)	223, 367, 555
ScrFI	CCNGG	3 cut(s)	129, 543, 704
SduI	GDGCHC	1 cut(s)	418
SexAI	ACCWGGT	1 cut(s)	127
SfaNI	GCATC	2 cut(s)	387, 610
Sfr303I	CCGCGG	1 cut(s)	365
SgrBI	CCGCGG	1 cut(s)	365
SinI	GGWCC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	4 cut(s)	436, 471, 521, 648
SsiI	CCGC	4 cut(s)	17, 362, 364, 596
SspMI	CTAG	1 cut(s)	617
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	3 cut(s)	127, 541, 702
TaaI	ACNGT	3 cut(s)	49, 150, 370
TaiI	ACGT	2 cut(s)	109, 583
TaqI	TCGA	3 cut(s)	447, 462, 549
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	4 cut(s)	436, 471, 521, 648
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	4 cut(s)	452, 487, 574, 673
Tru1I	TTAA	2 cut(s)	402, 435
Tru9I	TTAA	2 cut(s)	402, 435
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	2 cut(s)	197, 370
TseI	GCWGC	2 cut(s)	212, 221
Tsp45I	GTSAC	2 cut(s)	197, 370
TspDTI	ATGAA	5 cut(s)	95, 106, 324, 332, 334
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	122
XagI	CCTNNNNNAGG	1 cut(s)	132
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	1 cut(s)	205
XmiI	GTMKAC	2 cut(s)	191, 740
XmnI	GAANNNNTTC	2 cut(s)	39, 341
XspI	CTAG	1 cut(s)	617
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.