Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008493

Physical Location & Seq

Genomic Coordinates Reverse (-)

61205285 .. 61209375

Gene Structure 4091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCTGAAAATCTACAGATTGACCATGCCCAACAAATATGTGATTATACGTCCACCTGGCTCGGGAAAAGGTACCCAATCGCCTATAATTAAGGATGAGTACTGCTTGTGCCACTTGGCTACCGGCGATATGTTGAGATCCGCTGTTGCTGCTAAGACTCCTCTTGGCATTAAAGCTAAGGAGGCTATGGAGAAGGGAGAACTTGTTTCTGATGACCTGGTTGTGGGCATCATTGATGAAGCATTGAAGAAGCCTTCTTGCCAGAAAGGTTTCATTCTTGATGGATTTCCGAGAACTGTGGTCCAAGCACAGAAGCTAGATGAGATGCTCCAAAATCGTGGAGTTAAGGTTGATAAGGTGCTCAACTTTGCAATTGATGACTCAATCTTGGAAGAGAGGATTACAGGTCGCTGGATTCACCCATCCAGTGGCAGAAGCTATCACACTAAATTTGCACCACCCAAGGTTCCTGGTGTTGATGATGTAACTGGAGAGCCTCTCATTCAACGTAAGGATGATACTGCAGCCATTCTCAAGTCAAGGCTGGAAGCATTTCACAAGCAAACTGAACCATTGGTTAAAGGTTCTGTGGTTAATACGAGCATTAAAAAAAAAAAAATTTCTGCTTCAATGAAAAACAAATTTATTCTTGCTTCCTCAAATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0031090 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0046940 GO:0050145 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK ADK_lid

Protein Analysis

222

Amino Acids

24.46

Weight (kDa)

9.48

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	16 - 194	1.3e-53	Adenylate kinase
AAA_17	PF13207	18 - 136	1.3e-23	AAA domain
ADK_lid	PF05191	137 - 172	9.3e-18	Adenylate kinase, active site lid

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50370 AT5G50370 AT5G63400 AT5G63400
fragaria_vesca	FvH4_5g07870
malus_domestica	MD06G1145300.v1.1 MD14G1160000.v1.1
prunus_persica	Prupe.5G153600_v2.0.a1 Prupe.5G153600_v2.0.a1
pyrus_communis	pycom06g13460 pycom14g13350
rosa_chinensis	RchiOBHm_Chr7g0190591
rosa_laevigata	RLG00000004512
rosa_multiflora	Rmu_co8305173.1_g000001 Rmu_sc0006709.1_g000012
rosa_roxburghii	Rroxscaffold_3G00264480
rosa_rugosa	Rorug06G0505500 Rorug06G0505600
rosa_samantha	Rh7AG112100 Rh7BG114900
rosa_wichuraiana	Rw4G010280 Rw7G009780 Rw7G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	428
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	3 cut(s)	449, 618, 641
AfaI	GTAC	2 cut(s)	73, 101
AfiI	CCNNNNNNNGG	3 cut(s)	62, 223, 428
AgsI	TTSAA	3 cut(s)	247, 506, 630
AjnI	CCWGG	3 cut(s)	55, 216, 469
AluBI	AGCT	3 cut(s)	176, 316, 438
AluI	AGCT	3 cut(s)	176, 316, 438
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	132
Ama87I	CYCGRG	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	149, 524
ApoI	RAATTY	3 cut(s)	449, 618, 641
Asp700I	GAANNNNTTC	2 cut(s)	269, 552
Asp718I	GGTACC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	136, 536
BccI	CCATC	2 cut(s)	275, 430
BciT130I	CCWGG	3 cut(s)	57, 218, 471
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	2 cut(s)	13, 522
BisI	GCNGC	2 cut(s)	150, 525
BlsI	GCNGC	2 cut(s)	151, 526
BmcAI	AGTACT	1 cut(s)	101
Bme1390I	CCNGG	3 cut(s)	57, 218, 471
Bme18I	GGWCC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	2 cut(s)	73, 468
BmrFI	CCNGG	3 cut(s)	57, 218, 471
BmsI	GCATC	2 cut(s)	237, 315
BplI	GAGNNNNNCTC	2 cut(s)	483, 515
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	462
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 333, 363
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 223, 428
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	426, 493
BseBI	CCWGG	3 cut(s)	57, 218, 471
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	3 cut(s)	100, 422, 520
BseLI	CCNNNNNNNGG	3 cut(s)	62, 223, 428
BseNI	ACTGG	2 cut(s)	426, 493
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	136, 536
BshNI	GGYRCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	62, 223, 428
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	73, 468
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	426, 493
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	462
Bst2UI	CCWGG	3 cut(s)	57, 218, 471
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	153, 177
BstF5I	GGATG	3 cut(s)	100, 422, 520
BstKTI	GATC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 182
BstNI	CCWGG	3 cut(s)	57, 218, 471
BstSCI	CCNGG	3 cut(s)	55, 216, 469
BstSFI	CTRYAG	2 cut(s)	13, 522
BstV1I	GCAGC	2 cut(s)	136, 536
BstX2I	RGATCY	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	137
BtsCI	GGATG	3 cut(s)	100, 422, 520
BtsIMutI	CAGTG	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	301
CsiI	ACCWGGT	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	72, 100
CviAII	CATG	1 cut(s)	25
CviQI	GTAC	2 cut(s)	72, 100
DdeI	CTNAG	2 cut(s)	153, 177
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	61
EcoRII	CCWGG	3 cut(s)	55, 216, 469
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	1 cut(s)	28
FaiI	YATR	6 cut(s)	26, 39, 47, 86, 131, 188
FatI	CATG	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	150, 525
FokI	GGATG	3 cut(s)	107, 409, 527
Fsp4HI	GCNGC	2 cut(s)	150, 525
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	2 cut(s)	150, 525
GsuI	CTGGAG	1 cut(s)	510
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	1 cut(s)	28
HinfI	GANTC	3 cut(s)	157, 380, 415
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	211, 291
Hpy188III	TCNNGA	2 cut(s)	63, 278
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	187, 264
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	2 cut(s)	49, 508
HpyCH4V	TGCA	3 cut(s)	371, 455, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 182
HpyF3I	CTNAG	2 cut(s)	153, 177
HpySE526I	ACGT	2 cut(s)	49, 508
Hsp92II	CATG	1 cut(s)	28
KpnI	GGTACC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	2 cut(s)	136, 536
LweI	GCATC	2 cut(s)	237, 315
MabI	ACCWGGT	1 cut(s)	216
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	2 cut(s)	49, 508
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	2 cut(s)	259, 404
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	6 cut(s)	87, 372, 449, 618, 641, 661
MlyI	GAGTC	2 cut(s)	151, 374
MnlI	CCTC	5 cut(s)	171, 175, 390, 507, 667
MroXI	GAANNNNTTC	2 cut(s)	269, 552
MseI	TTAA	6 cut(s)	90, 171, 345, 579, 594, 606
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	3 cut(s)	57, 218, 471
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	3 cut(s)	57, 218, 471
MwoI	GCNNNNNNNGC	2 cut(s)	149, 182
NdeII	GATC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	2 cut(s)	73, 468
PdmI	GAANNNNTTC	2 cut(s)	269, 552
PfeI	GAWTC	1 cut(s)	415
PflMI	CCANNNNNTGG	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	151, 526
PleI	GAGTC	2 cut(s)	151, 374
PpsI	GAGTC	2 cut(s)	151, 374
Psp6I	CCWGG	3 cut(s)	55, 216, 469
PspGI	CCWGG	3 cut(s)	55, 216, 469
PspN4I	GGNNCC	2 cut(s)	73, 468
PspPI	GGNCC	1 cut(s)	301
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	2 cut(s)	73, 101
RsaNI	GTAC	2 cut(s)	72, 100
SaqAI	TTAA	6 cut(s)	90, 171, 345, 579, 594, 606
SatI	GCNGC	2 cut(s)	150, 525
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	1 cut(s)	301
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	2 cut(s)	151, 374
ScrFI	CCNGG	3 cut(s)	57, 218, 471
SduI	GDGCHC	1 cut(s)	363
SexAI	ACCWGGT	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	237, 315
SfcI	CTRYAG	2 cut(s)	13, 522
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	6 cut(s)	87, 372, 449, 618, 641, 661
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	3 cut(s)	55, 216, 469
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	2 cut(s)	52, 511
TasI	AATT	6 cut(s)	87, 372, 449, 618, 641, 661
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	6 cut(s)	90, 171, 345, 579, 594, 606
Tru9I	TTAA	6 cut(s)	90, 171, 345, 579, 594, 606
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	2 cut(s)	149, 524
TspDTI	ATGAA	3 cut(s)	252, 262, 647
TspRI	CASTG	1 cut(s)	433
Van91I	CCANNNNNTGG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	3 cut(s)	449, 618, 641
XmnI	GAANNNNTTC	2 cut(s)	269, 552
XspI	CTAG	1 cut(s)	317
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.