Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8305173.1

Orthogroup ID

OG0008493

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 905

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8305173.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 434 bp

gtccacctggctccggaaaaggtacccaatcgcctattattaaggatgagtactgcttgtgccacttggctaccggcgatatgttgagatccgctgttgctgctaagactcctcttggcgttaaagctaaggaggctatggagaagggagaacttgtttctgatgacctggttgtgggcatcattgatgaagcattgaagaagccttcttgccagaaaggtttcattcttgatggatttccgagaactgtggtccaagcacagaagctagatgagatgctccaaaatcgtggagttaaggttgataaggtgctcaactttgcaattgatgactcaatcttggaagagaggattacaggtcgctggattcacccatccagtggcagaagctatcacacaaaatttgcaccacccaaggttcctggtgttgatgat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0031090 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0046940 GO:0050145 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK ADK_lid

Protein Analysis

144

Amino Acids

15.63

Weight (kDa)

7.28

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50370 AT5G50370 AT5G63400 AT5G63400
fragaria_vesca	FvH4_5g07870
malus_domestica	MD06G1145300.v1.1 MD14G1160000.v1.1
prunus_persica	Prupe.5G153600_v2.0.a1 Prupe.5G153600_v2.0.a1
pyrus_communis	pycom06g13460 pycom14g13350
rosa_chinensis	RchiOBHm_Chr7g0190591
rosa_laevigata	RLG00000004512
rosa_multiflora	Rmu_co8305173.1_g000001 Rmu_sc0006709.1_g000012
rosa_roxburghii	Rroxscaffold_3G00264480
rosa_rugosa	Rorug06G0505500 Rorug06G0505600
rosa_samantha	Rh7AG112100 Rh7BG114900
rosa_wichuraiana	Rw4G010280 Rw7G009780 Rw7G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	22
AccB1I	GGYRCC	1 cut(s)	22
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	400
AfaI	GTAC	2 cut(s)	24, 52
AfiI	CCNNNNNNNGG	3 cut(s)	13, 174, 379
AgsI	TTSAA	1 cut(s)	198
AjnI	CCWGG	3 cut(s)	6, 167, 420
AluBI	AGCT	3 cut(s)	127, 267, 389
AluI	AGCT	3 cut(s)	127, 267, 389
Alw21I	GWGCWC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	400
Asp700I	GAANNNNTTC	1 cut(s)	220
Asp718I	GGTACC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	226, 381
BciT130I	CCWGG	3 cut(s)	8, 169, 422
BfaI	CTAG	1 cut(s)	268
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	3 cut(s)	8, 169, 422
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	3 cut(s)	12, 24, 419
BmrFI	CCNGG	3 cut(s)	8, 169, 422
BmsI	GCATC	2 cut(s)	188, 266
Bpu10I	CCTNAGC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	413
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 284, 314
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 174, 379
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	377
BseAI	TCCGGA	1 cut(s)	13
BseBI	CCWGG	3 cut(s)	8, 169, 422
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	2 cut(s)	51, 373
BseLI	CCNNNNNNNGG	3 cut(s)	13, 174, 379
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	14, 74
BslI	CCNNNNNNNGG	3 cut(s)	13, 174, 379
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	92
BspEI	TCCGGA	1 cut(s)	13
BspLI	GGNNCC	3 cut(s)	12, 24, 419
BspPI	GGATC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	413
Bst2UI	CCWGG	3 cut(s)	8, 169, 422
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	104, 128
BstF5I	GGATG	2 cut(s)	51, 373
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 133
BstNI	CCWGG	3 cut(s)	8, 169, 422
BstSCI	CCNGG	3 cut(s)	6, 167, 420
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	51, 373
BtsIMutI	CAGTG	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	252
CsiI	ACCWGGT	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	23, 51
CviJI	RGCY	7 cut(s)	11, 70, 127, 136, 204, 267, 389
CviKI_1	RGCY	7 cut(s)	11, 70, 127, 136, 204, 267, 389
CviQI	GTAC	2 cut(s)	23, 51
DdeI	CTNAG	2 cut(s)	104, 128
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	252
EcoRII	CCWGG	3 cut(s)	6, 167, 420
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FaiI	YATR	2 cut(s)	82, 139
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	2 cut(s)	58, 360
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	1 cut(s)	268
GluI	GCNGC	1 cut(s)	101
HapII	CCGG	2 cut(s)	14, 74
HinfI	GANTC	3 cut(s)	108, 331, 366
HpaII	CCGG	2 cut(s)	14, 74
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	1 cut(s)	4
Hpy188I	TCNGA	2 cut(s)	162, 242
Hpy188III	TCNNGA	2 cut(s)	14, 229
Hpy8I	GTNNAC	1 cut(s)	4
HpyAV	CCTTC	2 cut(s)	138, 215
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	322, 406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 133
HpyF3I	CTNAG	2 cut(s)	104, 128
Kpn2I	TCCGGA	1 cut(s)	13
KpnI	GGTACC	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	16, 284
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	2 cut(s)	188, 266
MabI	ACCWGGT	1 cut(s)	167
MaeI	CTAG	1 cut(s)	268
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	210, 355
MfeI	CAATTG	1 cut(s)	323
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	2 cut(s)	323, 400
MlyI	GAGTC	2 cut(s)	102, 325
MnlI	CCTC	3 cut(s)	122, 126, 341
MroI	TCCGGA	1 cut(s)	13
MroXI	GAANNNNTTC	1 cut(s)	220
MseI	TTAA	3 cut(s)	41, 122, 296
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	2 cut(s)	14, 74
MspR9I	CCNGG	3 cut(s)	8, 169, 422
MunI	CAATTG	1 cut(s)	323
MvaI	CCWGG	3 cut(s)	8, 169, 422
MwoI	GCNNNNNNNGC	2 cut(s)	100, 133
NdeII	GATC	1 cut(s)	88
NlaIV	GGNNCC	3 cut(s)	12, 24, 419
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	366
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	2 cut(s)	102, 325
PpsI	GAGTC	2 cut(s)	102, 325
Psp6I	CCWGG	3 cut(s)	6, 167, 420
PspGI	CCWGG	3 cut(s)	6, 167, 420
PspN4I	GGNNCC	3 cut(s)	12, 24, 419
PspPI	GGNCC	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	2 cut(s)	24, 52
RsaNI	GTAC	2 cut(s)	23, 51
SaqAI	TTAA	3 cut(s)	41, 122, 296
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	252
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	2 cut(s)	102, 325
ScrFI	CCNGG	3 cut(s)	8, 169, 422
SduI	GDGCHC	1 cut(s)	314
SexAI	ACCWGGT	1 cut(s)	167
SfaNI	GCATC	2 cut(s)	188, 266
SinI	GGWCC	1 cut(s)	252
Sse9I	AATT	2 cut(s)	323, 400
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	268
StyD4I	CCNGG	3 cut(s)	6, 167, 420
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	249
TasI	AATT	2 cut(s)	323, 400
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	366
Tru1I	TTAA	3 cut(s)	41, 122, 296
Tru9I	TTAA	3 cut(s)	41, 122, 296
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	203, 213
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	1 cut(s)	400
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	1 cut(s)	268
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.