Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008493

Physical Location & Seq

Genomic Coordinates Forward (+)

8591782 .. 8594850

Gene Structure 3069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG114900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCGAACTTGGAAGATGTGCCCTCCGCCGATCTTTTCAGTGAGGTGCTTCGTCGTTTGAAGTGCTCCACCAAGCCTGACAAGCGCCTCATTCTTGTGGGTCCACCTGGCTCAGGAAAAGGTACCCAATCGCCTATTATTAAGGATGAGTACTGCTTGTGCCACTTGGCTACCGGCGATATGTTGAGATCCGCTGTTGCTGCTAAGACTCCTCTTGGCGTTAAAGCTAAGGAGGCTATGGAGAAGGGAGAACTTGTTTCTGATGACCTGGTTGTGGGCATCATTGATGAAGCATTGAAGAAGCCTTCTTGCCAGAAAGGTTTCATTCTTGATGGATTTCCGAGAACTGTGGTCCAAGCACAGAAGCTAGATGAGATGCTCCAAAATCGTGGAGTTAAGGTTGATAAGGTGCTCAACTTTGCAATTGATGACTCAATCTTGGAAGAGAGGATTACAGGTCGCTGGATTCACCCATCCAGTGGCAGAAGCTATCACACAAAATTTGCACCACCCAAGGTTCCTGGTGTTGATGATGTAACTGGAGAGCCTCTCATTCAACGTAAGGATGATACTGCAGCCGTTCTCAAGTCAAGGCTGGAAGCATTTCACAAGCAAACTGAACCAGTAAGGCTTCTTCTTTCCATTAGATTTAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0031090 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0046940 GO:0050145 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK ADK_lid

Protein Analysis

219

Amino Acids

24.16

Weight (kDa)

8.61

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	32 - 209	1.5e-54	Adenylate kinase
AAA_17	PF13207	33 - 153	2.5e-25	AAA domain
ADK_lid	PF05191	154 - 189	9.2e-18	Adenylate kinase, active site lid

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50370 AT5G50370 AT5G63400 AT5G63400
fragaria_vesca	FvH4_5g07870
malus_domestica	MD06G1145300.v1.1 MD14G1160000.v1.1
prunus_persica	Prupe.5G153600_v2.0.a1 Prupe.5G153600_v2.0.a1
pyrus_communis	pycom06g13460 pycom14g13350
rosa_chinensis	RchiOBHm_Chr7g0190591
rosa_laevigata	RLG00000004512
rosa_multiflora	Rmu_co8305173.1_g000001 Rmu_sc0006709.1_g000012
rosa_roxburghii	Rroxscaffold_3G00264480
rosa_rugosa	Rorug06G0505500 Rorug06G0505600
rosa_samantha	Rh7AG112100 Rh7BG114900
rosa_wichuraiana	Rw4G010280 Rw7G009780 Rw7G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	479
AciI	CCGC	2 cut(s)	27, 192
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	500
AfaI	GTAC	2 cut(s)	124, 152
AfiI	CCNNNNNNNGG	3 cut(s)	113, 274, 479
AgsI	TTSAA	3 cut(s)	61, 298, 557
AjnI	CCWGG	3 cut(s)	106, 267, 520
AluBI	AGCT	3 cut(s)	227, 367, 489
AluI	AGCT	3 cut(s)	227, 367, 489
Alw21I	GWGCWC	2 cut(s)	68, 414
AlwI	GGATC	1 cut(s)	183
ApeKI	GCWGC	2 cut(s)	200, 575
ApoI	RAATTY	1 cut(s)	500
Asp700I	GAANNNNTTC	2 cut(s)	320, 603
Asp718I	GGTACC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	101, 352
AsuHPI	GGTGA	1 cut(s)	461
AvaII	GGWCC	2 cut(s)	101, 352
BaeGI	GKGCMC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	122
BarI	GAAGNNNNNNTAC	2 cut(s)	618, 650
Bbv12I	GWGCWC	2 cut(s)	68, 414
BbvI	GCAGC	2 cut(s)	187, 587
BccI	CCATC	2 cut(s)	326, 481
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	3 cut(s)	108, 269, 522
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	573
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	2 cut(s)	201, 576
BlsI	GCNGC	2 cut(s)	202, 577
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	3 cut(s)	108, 269, 522
Bme18I	GGWCC	2 cut(s)	101, 352
BmgT120I	GGNCC	2 cut(s)	101, 352
BmiI	GGNNCC	3 cut(s)	102, 124, 519
BmrFI	CCNGG	3 cut(s)	108, 269, 522
BmsI	GCATC	2 cut(s)	288, 366
BplI	GAGNNNNNCTC	2 cut(s)	534, 566
BpmI	CTGGAG	1 cut(s)	561
Bpu10I	CCTNAGC	2 cut(s)	112, 228
BpuEI	CTTGAG	1 cut(s)	569
BsaJI	CCNNGG	1 cut(s)	513
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 384, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 274, 479
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	3 cut(s)	477, 544, 623
BseBI	CCWGG	3 cut(s)	108, 269, 522
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	3 cut(s)	151, 473, 571
BseLI	CCNNNNNNNGG	3 cut(s)	113, 274, 479
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	3 cut(s)	477, 544, 623
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	187, 587
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	2 cut(s)	68, 414
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	3 cut(s)	113, 274, 479
Bsp1286I	GDGCHC	3 cut(s)	24, 68, 414
Bsp143I	GATC	2 cut(s)	31, 188
BspACI	CCGC	2 cut(s)	27, 192
BspCNI	CTCAG	1 cut(s)	125
BspLI	GGNNCC	3 cut(s)	102, 124, 519
BspMAI	CTGCAG	1 cut(s)	577
BspPI	GGATC	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	3 cut(s)	477, 544, 623
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	2 cut(s)	31, 188
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	3 cut(s)	108, 269, 522
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	438
BstDEI	CTNAG	3 cut(s)	112, 204, 228
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstF5I	GGATG	3 cut(s)	151, 473, 571
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	2 cut(s)	34, 191
BstMBI	GATC	2 cut(s)	31, 188
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 200, 233
BstNI	CCWGG	3 cut(s)	108, 269, 522
BstSCI	CCNGG	3 cut(s)	106, 267, 520
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	187, 587
BstX2I	RGATCY	1 cut(s)	188
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	151, 473, 571
BtsIMutI	CAGTG	2 cut(s)	46, 484
CfoI	GCGC	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	101, 352
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	123, 151
CviQI	GTAC	2 cut(s)	123, 151
DdeI	CTNAG	3 cut(s)	112, 204, 228
DpnI	GATC	2 cut(s)	33, 190
DpnII	GATC	2 cut(s)	31, 188
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	513
Eco47I	GGWCC	2 cut(s)	101, 352
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoRII	CCWGG	3 cut(s)	106, 267, 520
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaiI	YATR	2 cut(s)	182, 239
Fnu4HI	GCNGC	2 cut(s)	201, 576
FokI	GGATG	3 cut(s)	158, 460, 578
Fsp4HI	GCNGC	2 cut(s)	201, 576
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	2 cut(s)	201, 576
GsuI	CTGGAG	1 cut(s)	561
HaeII	RGCGCY	1 cut(s)	88
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	87
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	208, 431, 466
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	262, 342
Hpy188III	TCNNGA	2 cut(s)	114, 329
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	2 cut(s)	238, 315
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	3 cut(s)	422, 506, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 200, 233
HpyF3I	CTNAG	3 cut(s)	112, 204, 228
HpySE526I	ACGT	1 cut(s)	559
HspAI	GCGC	1 cut(s)	85
KpnI	GGTACC	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	31, 188
LmnI	GCTCC	2 cut(s)	71, 384
Lsp1109I	GCAGC	2 cut(s)	187, 587
LweI	GCATC	2 cut(s)	288, 366
MabI	ACCWGGT	1 cut(s)	267
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	2 cut(s)	33, 190
MboI	GATC	2 cut(s)	31, 188
MboII	GAAGA	4 cut(s)	26, 310, 455, 626
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	3 cut(s)	24, 68, 414
MluCI	AATT	3 cut(s)	423, 500, 652
MlyI	GAGTC	2 cut(s)	202, 425
MnlI	CCTC	7 cut(s)	34, 37, 98, 222, 226, 441, 558
MroXI	GAANNNNTTC	2 cut(s)	320, 603
MseI	TTAA	4 cut(s)	141, 222, 396, 651
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	3 cut(s)	108, 269, 522
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	3 cut(s)	108, 269, 522
MwoI	GCNNNNNNNGC	3 cut(s)	82, 200, 233
NdeII	GATC	2 cut(s)	31, 188
NlaIV	GGNNCC	3 cut(s)	102, 124, 519
PdmI	GAANNNNTTC	2 cut(s)	320, 603
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	202, 577
PleI	GAGTC	2 cut(s)	202, 425
PpsI	GAGTC	2 cut(s)	202, 425
Psp6I	CCWGG	3 cut(s)	106, 267, 520
PspGI	CCWGG	3 cut(s)	106, 267, 520
PspN4I	GGNNCC	3 cut(s)	102, 124, 519
PspPI	GGNCC	2 cut(s)	101, 352
PstI	CTGCAG	1 cut(s)	577
PsuI	RGATCY	1 cut(s)	188
RsaI	GTAC	2 cut(s)	124, 152
RsaNI	GTAC	2 cut(s)	123, 151
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	4 cut(s)	141, 222, 396, 651
SatI	GCNGC	2 cut(s)	201, 576
Sau3AI	GATC	2 cut(s)	31, 188
Sau96I	GGNCC	2 cut(s)	101, 352
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	2 cut(s)	202, 425
ScrFI	CCNGG	3 cut(s)	108, 269, 522
SduI	GDGCHC	3 cut(s)	24, 68, 414
SexAI	ACCWGGT	1 cut(s)	267
SfaNI	GCATC	2 cut(s)	288, 366
SfcI	CTRYAG	1 cut(s)	573
SinI	GGWCC	2 cut(s)	101, 352
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	3 cut(s)	423, 500, 652
SsiI	CCGC	2 cut(s)	27, 192
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	3 cut(s)	106, 267, 520
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	1 cut(s)	5
TasI	AATT	3 cut(s)	423, 500, 652
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	4 cut(s)	141, 222, 396, 651
Tru9I	TTAA	4 cut(s)	141, 222, 396, 651
TscAI	CASTG	2 cut(s)	46, 484
TseI	GCWGC	2 cut(s)	200, 575
TspDTI	ATGAA	2 cut(s)	303, 313
TspRI	CASTG	2 cut(s)	46, 484
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	101, 352
XagI	CCTNNNNNAGG	1 cut(s)	111
XapI	RAATTY	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	320, 603
XspI	CTAG	1 cut(s)	368
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.