Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008493

Physical Location & Seq

Genomic Coordinates Reverse (-)

23601653 .. 23604882

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCGGAGTCATTCGTTTCCAAAGGGTGTCATGCTGAGGAATTCCGGCATGTTCACATCCCACCCGTTAGTGCATTGTCCACCTGGCTCGGGAAAAGGTACCCAATCGCCTATAATTAAGGATGAGTACTGCTTGTGCCACTTGGCTACCGGCGATATGTTGAGATCCGCTGTTGCTGCTAAGACTCCTCTTGGCGTTAAAGCTAAGGAGGCTATGGAGAAGGGAGAACTTGTTTCTGATGACCTGGTTGTGGGCATCATTGATGAAGCATTGAAGAAGCCTTCTTGCCAGAAAGGTTTCATTCTTGATGGATTTCCGAGAACTGTGGTCCAAGCACAGAAGCTAGATGAGATGCTCCAAAATCGTGGAGTTAAGGTTGATAAGGTGCTCAACTTTGCAATTGATGACTCAATCTTGGAAGAGAGGATTACAGGTTGCTGGATTCACCCATCCAGTGGCAGAAGCTATCACACTAAATTTGCACCACCCAAGGTTCCTGGTGTTGATGATGTAACTGGAGAGCCTCTCATTCAACTTAAGGATGATACTGCAGCCGTTCTCAAGTCAAGGCTGGAAGCATTTCACAAGCAAACTGAACCATTTTTAGCTGGATTGAATGGTCTGATATACATTCAAAATGACATCACATCCAAAACACATTCATTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0031090 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0046940 GO:0050145 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK ADK_lid

Protein Analysis

223

Amino Acids

24.4

Weight (kDa)

7.68

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	26 - 202	6.3e-53	Adenylate kinase
AAA_17	PF13207	27 - 143	1.6e-23	AAA domain
ADK_lid	PF05191	147 - 181	4.5e-14	Adenylate kinase, active site lid

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50370 AT5G50370 AT5G63400 AT5G63400
fragaria_vesca	FvH4_5g07870
malus_domestica	MD06G1145300.v1.1 MD14G1160000.v1.1
prunus_persica	Prupe.5G153600_v2.0.a1 Prupe.5G153600_v2.0.a1
pyrus_communis	pycom06g13460 pycom14g13350
rosa_chinensis	RchiOBHm_Chr7g0190591
rosa_laevigata	RLG00000004512
rosa_multiflora	Rmu_co8305173.1_g000001 Rmu_sc0006709.1_g000012
rosa_roxburghii	Rroxscaffold_3G00264480
rosa_rugosa	Rorug06G0505500 Rorug06G0505600
rosa_samantha	Rh7AG112100 Rh7BG114900
rosa_wichuraiana	Rw4G010280 Rw7G009780 Rw7G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	455
AciI	CCGC	2 cut(s)	4, 168
AclWI	GGATC	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	40, 476
AfaI	GTAC	2 cut(s)	100, 128
AfiI	CCNNNNNNNGG	3 cut(s)	89, 250, 455
AflII	CTTAAG	1 cut(s)	536
AgsI	TTSAA	4 cut(s)	274, 533, 616, 635
AjnI	CCWGG	3 cut(s)	82, 243, 496
AluBI	AGCT	4 cut(s)	203, 343, 465, 608
AluI	AGCT	4 cut(s)	203, 343, 465, 608
Alw21I	GWGCWC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	159
Ama87I	CYCGRG	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	176, 551
ApoI	RAATTY	2 cut(s)	40, 476
Asp700I	GAANNNNTTC	2 cut(s)	296, 579
Asp718I	GGTACC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	163, 563
BccI	CCATC	2 cut(s)	302, 457
BceAI	ACGGC	1 cut(s)	539
BciT130I	CCWGG	3 cut(s)	84, 245, 498
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	549
BfrI	CTTAAG	1 cut(s)	536
BisI	GCNGC	2 cut(s)	177, 552
BlsI	GCNGC	2 cut(s)	178, 553
BmcAI	AGTACT	1 cut(s)	128
Bme1390I	CCNGG	3 cut(s)	84, 245, 498
Bme18I	GGWCC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	2 cut(s)	100, 495
BmrFI	CCNGG	3 cut(s)	84, 245, 498
BmsI	GCATC	2 cut(s)	264, 342
BplI	GAGNNNNNCTC	2 cut(s)	510, 542
BpmI	CTGGAG	1 cut(s)	537
Bpu10I	CCTNAGC	2 cut(s)	35, 204
BpuEI	CTTGAG	1 cut(s)	545
BsaJI	CCNNGG	1 cut(s)	489
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 360, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 250, 455
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	453, 520
BseBI	CCWGG	3 cut(s)	84, 245, 498
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	5 cut(s)	56, 127, 449, 547, 647
BseLI	CCNNNNNNNGG	3 cut(s)	89, 250, 455
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	453, 520
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	163, 563
BshNI	GGYRCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	45, 150
BslI	CCNNNNNNNGG	3 cut(s)	89, 250, 455
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	164
BspACI	CCGC	2 cut(s)	4, 168
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	100, 495
BspMAI	CTGCAG	1 cut(s)	553
BspPI	GGATC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	536
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	453, 520
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	3 cut(s)	84, 245, 498
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	414
BstAFI	CTTAAG	1 cut(s)	536
BstDEI	CTNAG	3 cut(s)	35, 180, 204
BstF5I	GGATG	5 cut(s)	56, 127, 449, 547, 647
BstKTI	GATC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 209
BstNI	CCWGG	3 cut(s)	84, 245, 498
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	3 cut(s)	82, 243, 496
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	163, 563
BstX2I	RGATCY	1 cut(s)	164
BstXI	CCANNNNNNTGG	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	164
BtsCI	GGATG	5 cut(s)	56, 127, 449, 547, 647
BtsIMutI	CAGTG	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	328
CsiI	ACCWGGT	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	99, 127
CviAII	CATG	3 cut(s)	31, 49, 667
CviQI	GTAC	2 cut(s)	99, 127
DdeI	CTNAG	3 cut(s)	35, 180, 204
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	3 cut(s)	82, 243, 496
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	3 cut(s)	34, 52, 670
FaiI	YATR	7 cut(s)	32, 50, 113, 158, 215, 628, 668
FatI	CATG	3 cut(s)	30, 48, 666
Fnu4HI	GCNGC	2 cut(s)	177, 552
FokI	GGATG	5 cut(s)	43, 134, 436, 554, 634
Fsp4HI	GCNGC	2 cut(s)	177, 552
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	2 cut(s)	177, 552
GsuI	CTGGAG	1 cut(s)	537
HapII	CCGG	2 cut(s)	45, 150
Hin1II	CATG	3 cut(s)	34, 52, 670
HinfI	GANTC	4 cut(s)	7, 184, 407, 442
HpaII	CCGG	2 cut(s)	45, 150
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	54, 80
Hpy188I	TCNGA	3 cut(s)	238, 318, 624
Hpy188III	TCNNGA	2 cut(s)	90, 305
Hpy8I	GTNNAC	2 cut(s)	54, 80
HpyAV	CCTTC	2 cut(s)	214, 291
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	4 cut(s)	73, 398, 482, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 209
HpyF3I	CTNAG	3 cut(s)	35, 180, 204
Hsp92II	CATG	3 cut(s)	34, 52, 670
KpnI	GGTACC	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	360
Lsp1109I	GCAGC	2 cut(s)	163, 563
LweI	GCATC	2 cut(s)	264, 342
MabI	ACCWGGT	1 cut(s)	243
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MboII	GAAGA	2 cut(s)	286, 431
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	4 cut(s)	40, 114, 399, 476
MlyI	GAGTC	3 cut(s)	16, 178, 401
MnlI	CCTC	5 cut(s)	30, 198, 202, 417, 534
MroXI	GAANNNNTTC	2 cut(s)	296, 579
MseI	TTAA	4 cut(s)	117, 198, 372, 537
MspA1I	CMGCKG	1 cut(s)	170
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	2 cut(s)	45, 150
MspR9I	CCNGG	3 cut(s)	84, 245, 498
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	3 cut(s)	84, 245, 498
MwoI	GCNNNNNNNGC	2 cut(s)	176, 209
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	34, 52, 670
NlaIV	GGNNCC	2 cut(s)	100, 495
NspI	RCATGY	1 cut(s)	52
PdmI	GAANNNNTTC	2 cut(s)	296, 579
PfeI	GAWTC	1 cut(s)	442
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	178, 553
PleI	GAGTC	3 cut(s)	15, 178, 401
PpsI	GAGTC	3 cut(s)	15, 178, 401
Psp6I	CCWGG	3 cut(s)	82, 243, 496
PspGI	CCWGG	3 cut(s)	82, 243, 496
PspN4I	GGNNCC	2 cut(s)	100, 495
PspPI	GGNCC	1 cut(s)	328
PstI	CTGCAG	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	164
RsaI	GTAC	2 cut(s)	100, 128
RsaNI	GTAC	2 cut(s)	99, 127
SaqAI	TTAA	4 cut(s)	117, 198, 372, 537
SatI	GCNGC	2 cut(s)	177, 552
Sau3AI	GATC	1 cut(s)	164
Sau96I	GGNCC	1 cut(s)	328
ScaI	AGTACT	1 cut(s)	128
SchI	GAGTC	3 cut(s)	16, 178, 401
ScrFI	CCNGG	3 cut(s)	84, 245, 498
SduI	GDGCHC	1 cut(s)	390
SexAI	ACCWGGT	1 cut(s)	243
SfaNI	GCATC	2 cut(s)	264, 342
SfcI	CTRYAG	1 cut(s)	549
SinI	GGWCC	1 cut(s)	328
SmlI	CTYRAG	2 cut(s)	536, 560
SmoI	CTYRAG	2 cut(s)	536, 560
Sse9I	AATT	4 cut(s)	40, 114, 399, 476
SsiI	CCGC	2 cut(s)	4, 168
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	3 cut(s)	82, 243, 496
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	325
TasI	AATT	4 cut(s)	40, 114, 399, 476
TatI	WGTACW	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	4 cut(s)	117, 198, 372, 537
Tru9I	TTAA	4 cut(s)	117, 198, 372, 537
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	2 cut(s)	176, 551
TspDTI	ATGAA	4 cut(s)	279, 289, 651, 655
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	455
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	2 cut(s)	40, 476
XceI	RCATGY	1 cut(s)	52
XmnI	GAANNNNTTC	2 cut(s)	296, 579
XspI	CTAG	1 cut(s)	344
ZrmI	AGTACT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.