Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008493

Physical Location & Seq

Genomic Coordinates Reverse (-)

4573924 .. 4577280

Gene Structure 3357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCCAACTTGGAAGATGTGCCGACCACCGATCTTTTCAGCGAGGTGCTTCGTCGTATGAAGTGCGCCACCAAGCCTGACAAGCGCCTCATTCTTGTTGGTCCACCTGGTTCTGGAAAAGGTACCCAATCGCCTATTATTAAGGACGAGTACTGCTTGTGCCATTTGGCTACTGGCGATATGTTGAGAGCCGCTGTTGCTGCAAAGACTCCTCTTGGCATTAAAGCTAAGGAGGCTATGGAGAAGGGGGAACTTGTTTCGGATGACCTGGTTGTGGGCATCATTGATGATGCATTGAAGAAGCCTTCTTGCCAGAAAGGTTTCATTCTTGATGGATTTCCAAGAACTGTTGTCCAAGCTCAGAAGCTAGACGAGATGCTCAAAAATCGTGGAGTTAAGGTTGATAAGGTGCTCAACTTTGCAGTTGATGACCGTATCTTGGAAGAGAGGATCACAGGTCGCTGGATTCATCCATCCAGTGGTAGAAGCTATCACACAAAATTTGCACCACCCAAGGTTCCTGGTGTTGATGATGCAACTGGAGAACCTCTCATTCAACGCAAGGATGATACTGCAGAAGTTCTCAAGTCAAGGTTGGAAGCATTTCACAAGCAAACTGAACCAGTTATTGATTATTATACCAAGAAAGGAGTTGTTGCCAATCTTCCAGCTGAGAAATCTCCGAAAGAGGTCACTGTTGAGGTCCAGAAAGTGCTCTCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0031090 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0046940 GO:0050145 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK ADK_lid

Protein Analysis

242

Amino Acids

26.5

Weight (kDa)

8.54

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	32 - 217	4.1e-60	Adenylate kinase
AAA_17	PF13207	33 - 153	1.5e-25	AAA domain
ADK_lid	PF05191	154 - 189	3e-17	Adenylate kinase, active site lid

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50370 AT5G50370 AT5G63400 AT5G63400
fragaria_vesca	FvH4_5g07870
malus_domestica	MD06G1145300.v1.1 MD14G1160000.v1.1
prunus_persica	Prupe.5G153600_v2.0.a1 Prupe.5G153600_v2.0.a1
pyrus_communis	pycom06g13460 pycom14g13350
rosa_chinensis	RchiOBHm_Chr7g0190591
rosa_laevigata	RLG00000004512
rosa_multiflora	Rmu_co8305173.1_g000001 Rmu_sc0006709.1_g000012
rosa_roxburghii	Rroxscaffold_3G00264480
rosa_rugosa	Rorug06G0505500 Rorug06G0505600
rosa_samantha	Rh7AG112100 Rh7BG114900
rosa_wichuraiana	Rw4G010280 Rw7G009780 Rw7G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	479
AciI	CCGC	1 cut(s)	192
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	500
AfaI	GTAC	2 cut(s)	124, 152
AfiI	CCNNNNNNNGG	4 cut(s)	113, 274, 439, 479
AgsI	TTSAA	2 cut(s)	298, 557
AjnI	CCWGG	3 cut(s)	106, 267, 520
AluBI	AGCT	5 cut(s)	227, 359, 367, 489, 671
AluI	AGCT	5 cut(s)	227, 359, 367, 489, 671
Alw21I	GWGCWC	2 cut(s)	414, 717
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	500
Asp700I	GAANNNNTTC	2 cut(s)	320, 603
Asp718I	GGTACC	1 cut(s)	122
AspLEI	GCGC	2 cut(s)	68, 87
AspS9I	GGNCC	2 cut(s)	101, 703
AvaII	GGWCC	2 cut(s)	101, 703
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	122
Bbv12I	GWGCWC	2 cut(s)	414, 717
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	2 cut(s)	326, 481
BciT130I	CCWGG	3 cut(s)	108, 269, 522
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	573
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	2 cut(s)	192, 201
BlsI	GCNGC	2 cut(s)	193, 202
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	3 cut(s)	108, 269, 522
Bme18I	GGWCC	2 cut(s)	101, 703
BmgT120I	GGNCC	2 cut(s)	101, 703
BmiI	GGNNCC	2 cut(s)	124, 519
BmrFI	CCNGG	3 cut(s)	108, 269, 522
BmsI	GCATC	4 cut(s)	280, 288, 366, 523
BplI	GAGNNNNNCTC	2 cut(s)	534, 566
BpmI	CTGGAG	1 cut(s)	561
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	569
BsaJI	CCNNGG	1 cut(s)	513
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 274, 439, 479
Bse1I	ACTGG	4 cut(s)	178, 477, 544, 623
BseBI	CCWGG	3 cut(s)	108, 269, 522
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	4 cut(s)	268, 469, 473, 571
BseLI	CCNNNNNNNGG	4 cut(s)	113, 274, 439, 479
BseMII	CTCAG	2 cut(s)	374, 663
BseNI	ACTGG	4 cut(s)	178, 477, 544, 623
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	2 cut(s)	414, 717
BslI	CCNNNNNNNGG	4 cut(s)	113, 274, 439, 479
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	414, 717
Bsp143I	GATC	2 cut(s)	31, 450
BspACI	CCGC	1 cut(s)	192
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	373, 664
BspLI	GGNNCC	2 cut(s)	124, 519
BspMAI	CTGCAG	1 cut(s)	577
BspPI	GGATC	1 cut(s)	458
BspT107I	GGYRCC	1 cut(s)	122
BsrI	ACTGG	4 cut(s)	178, 477, 544, 623
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	2 cut(s)	31, 450
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	3 cut(s)	108, 269, 522
Bst4CI	ACNGT	3 cut(s)	349, 434, 697
Bst6I	CTCTTC	1 cut(s)	438
BstDEI	CTNAG	3 cut(s)	228, 360, 672
BstF5I	GGATG	4 cut(s)	268, 469, 473, 571
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	68, 87
BstKTI	GATC	2 cut(s)	34, 453
BstMBI	GATC	2 cut(s)	31, 450
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 197, 200, 233
BstNI	CCWGG	3 cut(s)	108, 269, 522
BstSCI	CCNGG	3 cut(s)	106, 267, 520
BstSFI	CTRYAG	1 cut(s)	573
BstV1I	GCAGC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	4 cut(s)	268, 469, 473, 571
BtsIMutI	CAGTG	2 cut(s)	484, 693
CfoI	GCGC	2 cut(s)	68, 87
Cfr13I	GGNCC	2 cut(s)	101, 703
CsiI	ACCWGGT	2 cut(s)	106, 267
Csp6I	GTAC	2 cut(s)	123, 151
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviQI	GTAC	2 cut(s)	123, 151
DdeI	CTNAG	3 cut(s)	228, 360, 672
DpnI	GATC	2 cut(s)	33, 452
DpnII	GATC	2 cut(s)	31, 450
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	513
Eco47I	GGWCC	2 cut(s)	101, 703
EcoRII	CCWGG	3 cut(s)	106, 267, 520
EcoT14I	CCWWGG	1 cut(s)	513
EcoT22I	ATGCAT	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	513
FaiI	YATR	4 cut(s)	59, 182, 239, 639
Fnu4HI	GCNGC	2 cut(s)	192, 201
FokI	GGATG	4 cut(s)	275, 456, 460, 578
Fsp4HI	GCNGC	2 cut(s)	192, 201
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	2 cut(s)	67, 86
GluI	GCNGC	2 cut(s)	192, 201
GsuI	CTGGAG	1 cut(s)	561
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	2 cut(s)	68, 87
Hin6I	GCGC	2 cut(s)	66, 85
HinP1I	GCGC	2 cut(s)	66, 85
HinfI	GANTC	2 cut(s)	208, 466
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	262, 363, 684
Hpy188III	TCNNGA	3 cut(s)	114, 329, 706
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	2 cut(s)	238, 315
HpyCH4III	ACNGT	3 cut(s)	349, 434, 697
HpyCH4V	TGCA	6 cut(s)	203, 293, 422, 506, 536, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 197, 200, 233
HpyF3I	CTNAG	3 cut(s)	228, 360, 672
HspAI	GCGC	2 cut(s)	66, 85
KpnI	GGTACC	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	31, 450
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	4 cut(s)	280, 288, 366, 523
MabI	ACCWGGT	2 cut(s)	106, 267
MaeI	CTAG	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	2 cut(s)	33, 452
MboI	GATC	2 cut(s)	31, 450
MboII	GAAGA	5 cut(s)	26, 310, 455, 656, 711
MhlI	GDGCHC	2 cut(s)	414, 717
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	500
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	8 cut(s)	37, 98, 222, 226, 441, 558, 682, 694
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	295
MroXI	GAANNNNTTC	2 cut(s)	320, 603
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	141, 222, 396
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	194, 671
MspR9I	CCNGG	3 cut(s)	108, 269, 522
MvaI	CCWGG	3 cut(s)	108, 269, 522
MwoI	GCNNNNNNNGC	4 cut(s)	82, 197, 200, 233
NdeII	GATC	2 cut(s)	31, 450
NlaIV	GGNNCC	2 cut(s)	124, 519
NmuCI	GTSAC	1 cut(s)	691
NsiI	ATGCAT	1 cut(s)	295
PdmI	GAANNNNTTC	2 cut(s)	320, 603
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	193, 202
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	3 cut(s)	106, 267, 520
PspGI	CCWGG	3 cut(s)	106, 267, 520
PspN4I	GGNNCC	2 cut(s)	124, 519
PspPI	GGNCC	2 cut(s)	101, 703
PstI	CTGCAG	1 cut(s)	577
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	2 cut(s)	124, 152
RsaNI	GTAC	2 cut(s)	123, 151
SaqAI	TTAA	3 cut(s)	141, 222, 396
SatI	GCNGC	2 cut(s)	192, 201
Sau3AI	GATC	2 cut(s)	31, 450
Sau96I	GGNCC	2 cut(s)	101, 703
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	108, 269, 522
SduI	GDGCHC	2 cut(s)	414, 717
SexAI	ACCWGGT	2 cut(s)	106, 267
SfaNI	GCATC	4 cut(s)	280, 288, 366, 523
SfcI	CTRYAG	1 cut(s)	573
SinI	GGWCC	2 cut(s)	101, 703
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	1 cut(s)	500
SsiI	CCGC	1 cut(s)	192
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	3 cut(s)	106, 267, 520
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	349, 434, 697
TasI	AATT	1 cut(s)	500
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	3 cut(s)	141, 222, 396
Tru9I	TTAA	3 cut(s)	141, 222, 396
TscAI	CASTG	2 cut(s)	484, 700
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	3 cut(s)	74, 313, 458
TspRI	CASTG	2 cut(s)	484, 700
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	101, 703
XapI	RAATTY	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmnI	GAANNNNTTC	2 cut(s)	320, 603
XspI	CTAG	1 cut(s)	368
ZrmI	AGTACT	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.