Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008493

Physical Location & Seq

Genomic Coordinates Forward (+)

28801768 .. 28804804

Gene Structure 3037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1145300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCGGGCAGCTCCGCGGCAGCAGCGAACCTGGAAGATGTGCCCTCCGTCGATCTCATGACCGAGCTCCTCCGCCGCATGAAGTGCTCCACCAAGCCCGACAAGCGCGTCATTCTCATCGGCCCACCCGGATCAGGGAAAGGCACCCAATCACCCATAATTAAGGATGAGTATTGCTTATGCCACTTGGCTACTGGTGATATGTTGAGAGCCGCTGTTGCTGCTAAGACTCCTCTTGGGGTTAAGGCTAAAGAGGCTATGGACAAGGGAGAGCTTGTTTCGGATGACTTGGTTGTTGGCATCATAGATGAAGCAATGAAGAAGCCTTCATGTCAGAAAGGTTTCATTCTTGATGGATTTCCAAGGACTGTGGTCCAAGCACAGAAGCTGGATGAGATGCTGAAAAAGCAGGGTGCTAAAATTGATAAGGTGCTCAACTTTGCAGTCGATGATGCAATCTTGGAAGAGAGGATTACTGGTCGCTGGATACACCCATCCAGTGGTAGATCCTACCACACAAAATTTGCACCACCCAAGACTCCTGGCGTTGATGATGTAACTGGAGAACATCTGATTCAGCGTAAGGATGATACTGCACCTGTGCTCAAATCGAGGCTGGAAGCATTTCACAAGCAAACTGAACCAGTTATTGGTTATTATTCCCAGAAAGGCATTGTTGCCAATCTTCAAGCGGAGAAGCCTCCCCAAGAGGTCACTTCTGAGCTTCATAAAGTGCTCTCTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005524 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046483 GO:0046940 GO:0050145 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK ADK_lid

Protein Analysis

249

Amino Acids

26.95

Weight (kDa)

8.24

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	39 - 224	4.5e-59	Adenylate kinase
AAA_17	PF13207	40 - 160	3.6e-26	AAA domain
ADK_lid	PF05191	161 - 196	2.1e-16	Adenylate kinase, active site lid

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50370 AT5G50370 AT5G63400 AT5G63400
fragaria_vesca	FvH4_5g07870
malus_domestica	MD06G1145300.v1.1 MD14G1160000.v1.1
prunus_persica	Prupe.5G153600_v2.0.a1 Prupe.5G153600_v2.0.a1
pyrus_communis	pycom06g13460 pycom14g13350
rosa_chinensis	RchiOBHm_Chr7g0190591
rosa_laevigata	RLG00000004512
rosa_multiflora	Rmu_co8305173.1_g000001 Rmu_sc0006709.1_g000012
rosa_roxburghii	Rroxscaffold_3G00264480
rosa_rugosa	Rorug06G0505500 Rorug06G0505600
rosa_samantha	Rh7AG112100 Rh7BG114900
rosa_wichuraiana	Rw4G010280 Rw7G009780 Rw7G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	2 cut(s)	500, 650
AccII	CGCG	2 cut(s)	17, 108
AciI	CCGC	7 cut(s)	5, 15, 17, 73, 76, 213, 692
AclWI	GGATC	2 cut(s)	139, 501
AcsI	RAATTY	1 cut(s)	521
AfiI	CCNNNNNNNGG	4 cut(s)	134, 135, 500, 650
AgsI	TTSAA	1 cut(s)	689
AjnI	CCWGG	2 cut(s)	30, 541
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AluBI	AGCT	5 cut(s)	12, 67, 274, 388, 724
AluI	AGCT	5 cut(s)	12, 67, 274, 388, 724
Alw21I	GWGCWC	5 cut(s)	69, 89, 435, 606, 738
AlwI	GGATC	2 cut(s)	139, 501
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	4 cut(s)	9, 20, 23, 221
ApoI	RAATTY	1 cut(s)	521
Asp700I	GAANNNNTTC	2 cut(s)	341, 624
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	122, 373
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	144, 209
AvaII	GGWCC	1 cut(s)	373
BaeGI	GKGCMC	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	5 cut(s)	69, 89, 435, 606, 738
BbvI	GCAGC	4 cut(s)	21, 32, 35, 208
BccI	CCATC	2 cut(s)	347, 502
BciT130I	CCWGG	2 cut(s)	32, 543
BciVI	GTATCC	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	7 cut(s)	10, 18, 21, 24, 76, 213, 222
BlsI	GCNGC	7 cut(s)	11, 19, 22, 25, 77, 214, 223
Bme1390I	CCNGG	3 cut(s)	32, 129, 543
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	122, 373
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	3 cut(s)	32, 129, 543
BmsI	GCATC	3 cut(s)	309, 387, 442
BoxI	GACNNNNGTC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	582
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	15, 362
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 135, 500, 650
Bse1I	ACTGG	5 cut(s)	199, 481, 498, 565, 644
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	32, 543
BseDI	CCNNGG	2 cut(s)	15, 362
BseGI	GGATG	5 cut(s)	172, 289, 397, 494, 592
BseLI	CCNNNNNNNGG	4 cut(s)	134, 135, 500, 650
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	5 cut(s)	199, 481, 498, 565, 644
BseRI	GAGGAG	2 cut(s)	59, 222
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	4 cut(s)	21, 32, 35, 208
BsgI	GTGCAG	1 cut(s)	579
Bsh1236I	CGCG	2 cut(s)	17, 108
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	5 cut(s)	69, 89, 435, 606, 738
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	4 cut(s)	134, 135, 500, 650
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	6 cut(s)	45, 69, 89, 435, 606, 738
Bsp143I	GATC	3 cut(s)	52, 131, 506
BspACI	CCGC	7 cut(s)	5, 15, 17, 73, 76, 213, 692
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	712
BspFNI	CGCG	2 cut(s)	17, 108
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	139, 501
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	5 cut(s)	199, 481, 498, 565, 644
BssECI	CCNNGG	2 cut(s)	15, 362
BssMI	GATC	3 cut(s)	52, 131, 506
BssT1I	CCWWGG	1 cut(s)	362
Bst2UI	CCWGG	2 cut(s)	32, 543
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	225, 720
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	5 cut(s)	172, 289, 397, 494, 592
BstFNI	CGCG	2 cut(s)	17, 108
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	3 cut(s)	55, 134, 509
BstMBI	GATC	3 cut(s)	52, 131, 506
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 84, 103, 218, 221, 254, 406
BstNI	CCWGG	2 cut(s)	32, 543
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	3 cut(s)	30, 127, 541
BstSLI	GKGCMC	1 cut(s)	45
BstUI	CGCG	2 cut(s)	17, 108
BstV1I	GCAGC	4 cut(s)	21, 32, 35, 208
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	5 cut(s)	172, 289, 397, 494, 592
BtsIMutI	CAGTG	1 cut(s)	505
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	388
CciI	TCATGA	1 cut(s)	57
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	122, 373
Cfr42I	CCGCGG	1 cut(s)	18
CseI	GACGC	1 cut(s)	97
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	3 cut(s)	58, 79, 330
DdeI	CTNAG	2 cut(s)	225, 720
DpnI	GATC	3 cut(s)	54, 133, 508
DpnII	GATC	3 cut(s)	52, 131, 506
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
EciI	GGCGGA	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	30, 541
EcoT14I	CCWWGG	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	3 cut(s)	61, 82, 333
FaiI	YATR	9 cut(s)	59, 80, 158, 181, 203, 260, 305, 331, 729
FatI	CATG	3 cut(s)	57, 78, 329
Fnu4HI	GCNGC	7 cut(s)	10, 18, 21, 24, 76, 213, 222
FokI	GGATG	5 cut(s)	179, 296, 404, 481, 599
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	7 cut(s)	10, 18, 21, 24, 76, 213, 222
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	7 cut(s)	10, 18, 21, 24, 76, 213, 222
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	61, 82, 333
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	229, 538, 574
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	144, 209
Hpy188I	TCNGA	4 cut(s)	283, 336, 573, 721
Hpy188III	TCNNGA	2 cut(s)	58, 350
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	4 cut(s)	443, 455, 527, 596
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 84, 103, 218, 221, 254, 406
HpyF3I	CTNAG	2 cut(s)	225, 720
Hsp92II	CATG	3 cut(s)	61, 82, 333
HspAI	GCGC	1 cut(s)	106
KspI	CCGCGG	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	52, 131, 506
LmnI	GCTCC	3 cut(s)	17, 72, 92
Lsp1109I	GCAGC	4 cut(s)	21, 32, 35, 208
LweI	GCATC	3 cut(s)	309, 387, 442
MaeIII	GTNAC	2 cut(s)	556, 712
MalI	GATC	3 cut(s)	54, 133, 508
MboI	GATC	3 cut(s)	52, 131, 506
MboII	GAAGA	5 cut(s)	47, 331, 476, 677, 732
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	6 cut(s)	45, 69, 89, 435, 606, 738
MluCI	AATT	3 cut(s)	159, 420, 521
MlyI	GAGTC	2 cut(s)	223, 532
MnlI	CCTC	8 cut(s)	55, 80, 243, 247, 462, 606, 703, 711
MroXI	GAANNNNTTC	2 cut(s)	341, 624
MseI	TTAA	2 cut(s)	162, 243
MspA1I	CMGCKG	2 cut(s)	17, 215
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	3 cut(s)	32, 129, 543
MvaI	CCWGG	2 cut(s)	32, 543
MvnI	CGCG	2 cut(s)	17, 108
MwoI	GCNNNNNNNGC	7 cut(s)	23, 84, 103, 218, 221, 254, 406
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	3 cut(s)	52, 131, 506
NlaIII	CATG	3 cut(s)	61, 82, 333
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	712
PagI	TCATGA	1 cut(s)	57
PdmI	GAANNNNTTC	2 cut(s)	341, 624
PfeI	GAWTC	1 cut(s)	574
PflMI	CCANNNNNTGG	2 cut(s)	500, 650
PkrI	GCNGC	7 cut(s)	11, 19, 22, 25, 77, 214, 223
PleI	GAGTC	2 cut(s)	223, 532
PpsI	GAGTC	2 cut(s)	223, 532
PshAI	GACNNNNGTC	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	30, 541
PspGI	CCWGG	2 cut(s)	30, 541
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	122, 373
PstNI	CAGNNNCTG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	69
SacII	CCGCGG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	162, 243
SatI	GCNGC	7 cut(s)	10, 18, 21, 24, 76, 213, 222
Sau3AI	GATC	3 cut(s)	52, 131, 506
Sau96I	GGNCC	2 cut(s)	122, 373
SchI	GAGTC	2 cut(s)	223, 532
ScrFI	CCNGG	3 cut(s)	32, 129, 543
SduI	GDGCHC	6 cut(s)	45, 69, 89, 435, 606, 738
SfaNI	GCATC	3 cut(s)	309, 387, 442
Sfr303I	CCGCGG	1 cut(s)	18
SgrBI	CCGCGG	1 cut(s)	18
SinI	GGWCC	1 cut(s)	373
Sse9I	AATT	3 cut(s)	159, 420, 521
SsiI	CCGC	7 cut(s)	5, 15, 17, 73, 76, 213, 692
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	30, 127, 541
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	3 cut(s)	51, 447, 611
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	3 cut(s)	159, 420, 521
TauI	GCSGC	3 cut(s)	20, 78, 215
TfiI	GAWTC	1 cut(s)	574
Tru1I	TTAA	2 cut(s)	162, 243
Tru9I	TTAA	2 cut(s)	162, 243
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	4 cut(s)	9, 20, 23, 221
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	6 cut(s)	95, 318, 324, 332, 334, 716
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	505
Van91I	CCANNNNNTGG	2 cut(s)	500, 650
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	1 cut(s)	521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XmnI	GAANNNNTTC	2 cut(s)	341, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.