Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008493

Physical Location & Seq

Genomic Coordinates Forward (+)

18446056 .. 18448508

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g13460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGACCGAGCTCCTCCGCCGCATGAAGTGCTCCACCAAGCCCGACAAGCGCGTCATTCTCATCGGCCCACCCGGATCAGGGAAAGGTACCCAATCACCCATAATTAAGGATGAGTATTGCTTATGCCACTTGGCTACTGGTGATATGTTGAGAGCCGCTGTTGCTGCTAAGACTCCTCTTGGGGTTAAGGCTAAAGAGGCTATGGACAAGGGAGAGCTTGTTTCGGATGACTTGGTTGTTGGCATCATAGATGAAGCAATGAAGAAGCCTTCATGTCAGAAAGGTTTCATTCTTGATGGATTTCCAAGGACTGTGGTCCAAGCACAGAAGCTGGATGAGATGCTGAAAAAGCAGGGTGCTAAAATTGATAAGGTGCTCAACTTTGCAGTAGATGATGCAATCTTGGAAGAGAGGATTACTGGTCGCTGGATACACCCATCCAGTGATCGATCCTACCACACAAAATTTGCACCACCCAAGACTCCTGGCGTTGATGATGTAACTGGAGAACCTCTGATTCAGCGTAAGGATGATACTGCAGCTGTGCTCAGATCGAGGCTGGAAGCATTTCACAAGCAAACTGCACCAGTTATTGGTTATTATTCCCAGAAAGGCATTGTTGCCAATCTTAAAGCGGAGAAGCCTCCCCAAGAGGTCACTTCTGAGGTTCATAAAGTGCTCTCTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005524 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046483 GO:0046940 GO:0050145 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK ADK_lid

Protein Analysis

230

Amino Acids

25.1

Weight (kDa)

9.05

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50370 AT5G50370 AT5G63400 AT5G63400
fragaria_vesca	FvH4_5g07870
malus_domestica	MD06G1145300.v1.1 MD14G1160000.v1.1
prunus_persica	Prupe.5G153600_v2.0.a1 Prupe.5G153600_v2.0.a1
pyrus_communis	pycom06g13460 pycom14g13350
rosa_chinensis	RchiOBHm_Chr7g0190591
rosa_laevigata	RLG00000004512
rosa_multiflora	Rmu_co8305173.1_g000001 Rmu_sc0006709.1_g000012
rosa_roxburghii	Rroxscaffold_3G00264480
rosa_rugosa	Rorug06G0505500 Rorug06G0505600
rosa_samantha	Rh7AG112100 Rh7BG114900
rosa_wichuraiana	Rw4G010280 Rw7G009780 Rw7G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
Acc65I	GGTACC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	593
AccII	CGCG	1 cut(s)	51
AciI	CCGC	4 cut(s)	16, 19, 156, 635
AclWI	GGATC	2 cut(s)	82, 444
AcsI	RAATTY	1 cut(s)	464
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	3 cut(s)	77, 78, 593
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	4 cut(s)	10, 217, 331, 542
AluI	AGCT	4 cut(s)	10, 217, 331, 542
Alw21I	GWGCWC	5 cut(s)	12, 32, 378, 549, 681
AlwI	GGATC	2 cut(s)	82, 444
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	164, 539
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	2 cut(s)	284, 567
Asp718I	GGTACC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	65, 316
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	87, 152
AvaII	GGWCC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	5 cut(s)	12, 32, 378, 549, 681
BbvI	GCAGC	2 cut(s)	151, 551
BccI	CCATC	2 cut(s)	290, 445
BciT130I	CCWGG	1 cut(s)	486
BciVI	GTATCC	1 cut(s)	423
BcnI	CCSGG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	537
BfuI	GTATCC	1 cut(s)	423
BisI	GCNGC	4 cut(s)	19, 156, 165, 540
BlsI	GCNGC	4 cut(s)	20, 157, 166, 541
Bme1390I	CCNGG	2 cut(s)	72, 486
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	65, 316
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	72, 486
BmsI	GCATC	3 cut(s)	252, 330, 385
BoxI	GACNNNNGTC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	305
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 78, 593
Bse1I	ACTGG	5 cut(s)	142, 424, 441, 508, 587
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	486
BseCI	ATCGAT	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	5 cut(s)	115, 232, 340, 437, 535
BseLI	CCNNNNNNNGG	3 cut(s)	77, 78, 593
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	562, 654
BseNI	ACTGG	5 cut(s)	142, 424, 441, 508, 587
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	151, 551
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	448
BsiHKAI	GWGCWC	5 cut(s)	12, 32, 378, 549, 681
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	3 cut(s)	77, 78, 593
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	5 cut(s)	12, 32, 378, 549, 681
Bsp143I	GATC	4 cut(s)	74, 445, 449, 551
BspACI	CCGC	4 cut(s)	16, 19, 156, 635
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	561, 655
BspDI	ATCGAT	1 cut(s)	448
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	2 cut(s)	82, 444
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	5 cut(s)	142, 424, 441, 508, 587
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	4 cut(s)	74, 445, 449, 551
BssT1I	CCWWGG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	168, 548, 663
BstF5I	GGATG	5 cut(s)	115, 232, 340, 437, 535
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	4 cut(s)	77, 448, 452, 554
BstMBI	GATC	4 cut(s)	74, 445, 449, 551
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 46, 161, 164, 197, 349
BstNI	CCWGG	1 cut(s)	486
BstPAI	GACNNNNGTC	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	70, 484
BstSFI	CTRYAG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	151, 551
Bsu15I	ATCGAT	1 cut(s)	448
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	66
BsuTUI	ATCGAT	1 cut(s)	448
BtsCI	GGATG	5 cut(s)	115, 232, 340, 437, 535
BtsIMutI	CAGTG	1 cut(s)	448
CaiI	CAGNNNCTG	1 cut(s)	331
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	65, 316
ClaI	ATCGAT	1 cut(s)	448
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	87
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviAII	CATG	2 cut(s)	22, 273
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	168, 548, 663
DpnI	GATC	4 cut(s)	76, 447, 451, 553
DpnII	GATC	4 cut(s)	74, 445, 449, 551
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
EciI	GGCGGA	1 cut(s)	5
Ecl136II	GAGCTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	2 cut(s)	25, 276
FaiI	YATR	8 cut(s)	23, 101, 124, 146, 203, 248, 274, 672
FatI	CATG	2 cut(s)	21, 272
Fnu4HI	GCNGC	4 cut(s)	19, 156, 165, 540
FokI	GGATG	5 cut(s)	122, 239, 347, 424, 542
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	4 cut(s)	19, 156, 165, 540
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	4 cut(s)	19, 156, 165, 540
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	25, 276
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	3 cut(s)	172, 481, 517
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	87, 152
Hpy188I	TCNGA	5 cut(s)	226, 279, 516, 551, 664
Hpy188III	TCNNGA	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	5 cut(s)	386, 398, 470, 539, 584
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 46, 161, 164, 197, 349
HpyF3I	CTNAG	3 cut(s)	168, 548, 663
Hsp92II	CATG	2 cut(s)	25, 276
HspAI	GCGC	1 cut(s)	49
KpnI	GGTACC	1 cut(s)	90
Kzo9I	GATC	4 cut(s)	74, 445, 449, 551
LmnI	GCTCC	2 cut(s)	15, 35
Lsp1109I	GCAGC	2 cut(s)	151, 551
LweI	GCATC	3 cut(s)	252, 330, 385
MaeIII	GTNAC	2 cut(s)	499, 655
MalI	GATC	4 cut(s)	76, 447, 451, 553
MboI	GATC	4 cut(s)	74, 445, 449, 551
MboII	GAAGA	3 cut(s)	274, 419, 675
MhlI	GDGCHC	5 cut(s)	12, 32, 378, 549, 681
MluCI	AATT	3 cut(s)	102, 363, 464
MlyI	GAGTC	2 cut(s)	166, 475
MnlI	CCTC	9 cut(s)	23, 186, 190, 405, 522, 549, 646, 654, 658
MroXI	GAANNNNTTC	2 cut(s)	284, 567
MseI	TTAA	3 cut(s)	105, 186, 630
MspA1I	CMGCKG	2 cut(s)	158, 542
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	72, 486
MvaI	CCWGG	1 cut(s)	486
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	6 cut(s)	27, 46, 161, 164, 197, 349
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	4 cut(s)	74, 445, 449, 551
NlaIII	CATG	2 cut(s)	25, 276
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	655
PdmI	GAANNNNTTC	2 cut(s)	284, 567
PfeI	GAWTC	1 cut(s)	517
PflMI	CCANNNNNTGG	1 cut(s)	593
PkrI	GCNGC	4 cut(s)	20, 157, 166, 541
PleI	GAGTC	2 cut(s)	166, 475
PpsI	GAGTC	2 cut(s)	166, 475
PshAI	GACNNNNGTC	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	65, 316
PstI	CTGCAG	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	105, 186, 630
SatI	GCNGC	4 cut(s)	19, 156, 165, 540
Sau3AI	GATC	4 cut(s)	74, 445, 449, 551
Sau96I	GGNCC	2 cut(s)	65, 316
SchI	GAGTC	2 cut(s)	166, 475
ScrFI	CCNGG	2 cut(s)	72, 486
SduI	GDGCHC	5 cut(s)	12, 32, 378, 549, 681
SfaNI	GCATC	3 cut(s)	252, 330, 385
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	316
Sse9I	AATT	3 cut(s)	102, 363, 464
SsiI	CCGC	4 cut(s)	16, 19, 156, 635
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	70, 484
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	448, 554
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	102, 363, 464
TauI	GCSGC	2 cut(s)	21, 158
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	3 cut(s)	105, 186, 630
Tru9I	TTAA	3 cut(s)	105, 186, 630
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	2 cut(s)	164, 539
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	6 cut(s)	38, 261, 267, 275, 277, 659
TspRI	CASTG	1 cut(s)	448
Van91I	CCANNNNNTGG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XmnI	GAANNNNTTC	2 cut(s)	284, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.