Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008493

Physical Location & Seq

Genomic Coordinates Forward (+)

62082890 .. 62086483

Gene Structure 3594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0505500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3054 bp

ATGCAGTTGCACACCAATCTCCGACCCAAATCAATTTTCTTCTCCACCAAAAACCCCAAAACCCTTCTCCTTCCTCTCTTCAATTTCTCCTCTCTCTCCAACCCCATCTCTCACTCGCAACCCTCTTCTCCATGGTTCTCTATCCTCCGCTCCGCCATTGCCAATTCAGACTTGCCCCTCGGCAAGCGTGCCCACGCCCTTATGTTAACCTCAGGGGAATGCCAAGACCATTTTCTAATCAACAATCTCATCACCATGTATTCGAAATGCAGGTCGCTCACGTATGCACGCCACCTGTTCGATAAAAGTCCTGACCGAGACCTGGTCACCTGGAATGCCATTCTAGCAGCCTATGCCCAAGCTGGGGGCCCTGTGGTTGAGAATGTTCAAGAGGGACTCGGCCTTTTCCGGCGGCTTCGTGAGTCTGTTGTGCTCACCAGTCGGCACACTTTGGCTTCCGTTTTGAAGCTGTGTTTGCTGTCGGGGCGTGTTTGGATTTCGGAGGCTGTTCAGGGGTACGCTGTGAAAGTTGGGTTGGAGTGGGATGTGTTTGTTTCGGGTACCCTGGTGAATGTGTATTGCAAACTCAGAAGAGTTAAGGAGGCTCGGGCTTTGTTTGATGGGATGCTGGAAAGGGATGTTGTGTTGTGGAACACAATGCTCAAGGCATATGTGGAAATGGGTCTTCAGGAAGAAGCACTTGCTCTTTTCTCTAAGTTTCATCGGAGTGGATTGGGTCCTGATGATGTCAGTGTGCGTTGTGTTCTTAGTGGGATTCACAAAGTTGATTATGATGAAGGCAAGAGGCACATGGAGGAGGTTCGAGCATATGCAGCAAAGCTGGGGGAGTTTATAACTAATGTGGATGATGAAGCCCATCCACCAAGCTCTTGTGTTCCCACTACTAATTCCGACATATTTTTGTGGAACAAGACATTGTCCAAGTATATCCGAGCTGGTGAAAATTGGGCTGCGATAGAGTGCTTTAGAAATATGATTAGATCAAAAGTTGGATATGACAGTGTGACGTTAGTAATTATTCTATCTGCGATTGTGGGCACAAATAATTTGGAGGTGGGGAAACAGATTCATGGTGCTGCTTTGAAATCAGATTTTGGTTCTGTTCTTTTGGTAGCAAATAGCCTTATCAACATGTATTCAAAGGCTCGCTGTGTTCACTTTGCGAGAGAAGTATTCAATCACATGAAAGAAGTGGACCTAGTTTCATGGAACTCGATGATATCATGTTATGCTCAAAGCGGTTCAGGAGAGGAATCAATAAATCTATTTATAGGTTTATTACGGGATGGTCTAAAACCTGATCAATTTACAATTGCAAGTATTTTAAGGGCTTGCTCCTCTCTTCAAGAAGGGTTGCATCTCAGTGAACAGGTTCATGTTCATGCAATAAAGAACGGTATTGCTGCTGACAGATTTGTTTCAACAGCTCTTATTGATGTTTATTCTAGAAGTGGAAAGATGGACGAGGCGGAGGCCCTTTTAGATAACAAAGTTAAATTCGATCTGGCATCTTGGAATGCGTTGATGTTTGGTTACATAAAGAGTAATGACAGTCACAAAGCACTACAACTTATGAGGATGATTCATGAAGGTGGAAAGAGAGTAGATGAGATTACTTTGGCAACTGTTGCTAAGGCCACTAGTTGCCTGGTAGCGTTGGTACCGGGGAAGCAAATTCATGCTCATGTTATAAAAACAGGGTATTCAAAGGACTTATATGTTAACAGCAGTATTCTAGATATGTACATAAAATGTGGAGACATGAAAAGTGCACACACAGTTTTCAATGACATTCCTGCACCTGATGATGTTGCGTGGACAACTCTAATCTCAGGATGTTTAGAAAATGGAGATGAAGGGCGCTCTGTGTCTATATACCATCAGATGAGGCAGTCAGGAGTTCAGCCTGATGAATACACCTTAGCTACCCTTGTCAAAGCTGCCTCTTGTCTGACAGCATTGGAACAAGGGAAACAGATACATGCAGATGCAATAAAGTTGGAATATTCCTCAGACCCTTATGTTGCGACATCACTTGTTGACATGTATGCCAAGTGCGGTAACATAGAAGGTGCATATCGTTTATTCAGAAGGATGGATGTCGGGAGCATTGTCCTGTGGAATGCCATGTTGGTGGGTTTAGCCCAACATGGAGATGCTGAAGAAGCACTAAATCTTTTCAGAGTCATGAAATCTAATAACATTTTGCCTGATAGAGTTACTTTCATTGGAGTTCTTTCTGCTTGCAGCCACTCTGGTTTAGTTTCTGAAGCTTACGAGCATTTTTCTTCAATGCAAAGAGATTACGGCATTGAACCTGAGATCGAGCACTACTCTTGTCTAGTCGATGCCCTTGGCCGCGCAGGGCGTGTTCAAGAGGCAGAAAAGCTGATAGCATCAATGCCATTTGAAGCTTCTGCTTCAATGTACAGAGCCCTGCTTGGTGCTTGCAGGGTTCAAGGGGACACAGAAACAGGAAAACGAGTAGCAGAACAGCTCTTGGCTATTGAGCCAACTGACTCATCCGCATATGTTCTCATATCCAATATGAATGCTGCTGCCAACCAGTGGGATGCTGTGAACGATGCTCGTCAAATGATGAAACAGAAGAATGTAAAGAAAGAACCAGGTTTCAGTTGGATAGATGTGAAGAACAAGGTCCATTTGTTTGTAGTAGATGACAAATCCCATCCTGAAGCCGATTTGATATACGACAAGTTGGAGGACTTGATGAAAAGGATCGGTGAAGAAGGGTATGTCCCTGACACAGAGTTTGTGCTTGCTGATGTTGAAGAAGAGGAAAAAGAGCGAGCCCTATATTACCATAGTGAGAGGCTAGCAATAGCTTATGGACTGATAAGCACTCCCTCATCTGCCATTATTCGGGTCATTAAGAACCTTAGAGTTTGTGGAGACTGCCATAATGCAATCAAATACATATCAAAGGTTTCTCAAAGAGAAATTGTGGTAAGAGATGCAAATCGCTTCCATCGTTTCAGAAATGGGAGCTGCTCCTGTGGTGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0031090 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0046940 GO:0050145 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK ADK_lid

Protein Analysis

1017

Amino Acids

113.22

Weight (kDa)

6.43

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	212 - 259	3.5e-07	PPR repeat family
PPR_2	PF13041	406 - 453	3.4e-07	PPR repeat family
PPR_2	PF13041	608 - 654	5.7e-09	PPR repeat family
PPR_2	PF13041	710 - 757	3.3e-10	PPR repeat family
PPR	PF01535	712 - 742	2.6e-06	PPR repeat
E_motif	PF20431	829 - 889	5.5e-16	E motif
Eplus_motif	PF20430	894 - 921	1.2e-09	E+ motif
DYW_deaminase	PF14432	925 - 1017	3.5e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50370 AT5G50370 AT5G63400 AT5G63400
fragaria_vesca	FvH4_5g07870
malus_domestica	MD06G1145300.v1.1 MD14G1160000.v1.1
prunus_persica	Prupe.5G153600_v2.0.a1 Prupe.5G153600_v2.0.a1
pyrus_communis	pycom06g13460 pycom14g13350
rosa_chinensis	RchiOBHm_Chr7g0190591
rosa_laevigata	RLG00000004512
rosa_multiflora	Rmu_co8305173.1_g000001 Rmu_sc0006709.1_g000012
rosa_roxburghii	Rroxscaffold_3G00264480
rosa_rugosa	Rorug06G0505500 Rorug06G0505600
rosa_samantha	Rh7AG112100 Rh7BG114900
rosa_wichuraiana	Rw4G010280 Rw7G009780 Rw7G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	854, 1712
Acc36I	ACCTGC	1 cut(s)	261
Acc65I	GGTACC	2 cut(s)	560, 1681
AccB1I	GGYRCC	2 cut(s)	560, 1681
AccB7I	CCANNNNNTGG	1 cut(s)	2589
AccBSI	CCGCTC	1 cut(s)	150
AccII	CGCG	1 cut(s)	2382
AciI	CCGC	8 cut(s)	148, 153, 412, 1260, 1490, 2079, 2380, 2547
AclWI	GGATC	1 cut(s)	2768
AcoI	YGGCCR	1 cut(s)	2377
AcsI	RAATTY	2 cut(s)	1517, 1695
AcuI	CTGAAG	4 cut(s)	671, 2202, 2310, 2736
AfaI	GTAC	5 cut(s)	518, 562, 1683, 1766, 2450
AfiI	CCNNNNNNNGG	5 cut(s)	322, 363, 364, 2589, 2904
AflIII	ACRYGT	2 cut(s)	1152, 2064
AhlI	ACTAGT	1 cut(s)	1661
AjnI	CCWGG	5 cut(s)	321, 329, 564, 1668, 2647
AjuI	GAANNNNNNNTTGG	8 cut(s)	20, 52, 216, 248, 518, 550, 2135, 2167
Alw21I	GWGCWC	3 cut(s)	435, 1795, 2352
Alw26I	GTCTC	3 cut(s)	312, 1773, 2928
Alw44I	GTGCAC	1 cut(s)	1791
AlwI	GGATC	1 cut(s)	2768
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	5 cut(s)	367, 400, 1494, 1656, 2377
ApaI	GGGCCC	1 cut(s)	371
ApaLI	GTGCAC	1 cut(s)	1791
ApoI	RAATTY	2 cut(s)	1517, 1695
ArsI	GACNNNNNNTTYG	4 cut(s)	257, 289, 2777, 2809
Asp700I	GAANNNNTTC	1 cut(s)	1392
Asp718I	GGTACC	2 cut(s)	560, 1681
AspLEI	GCGC	2 cut(s)	1884, 2384
AspS9I	GGNCC	6 cut(s)	367, 368, 737, 1216, 1495, 2680
AsuC2I	CCSGG	1 cut(s)	1686
AsuHPI	GGTGA	7 cut(s)	244, 319, 427, 580, 971, 2777, 3053
AsuII	TTCGAA	1 cut(s)	263
AsuNHI	GCTAGC	1 cut(s)	2857
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	3 cut(s)	737, 1216, 2680
AxyI	CCTNAGG	1 cut(s)	211
BaeGI	GKGCMC	4 cut(s)	193, 371, 1061, 1795
BaeI	ACNNNNGTAYC	2 cut(s)	552, 585
BanI	GGYRCC	2 cut(s)	560, 1681
BanII	GRGCYC	3 cut(s)	371, 2458, 2836
BbsI	GAAGAC	1 cut(s)	677
Bbv12I	GWGCWC	3 cut(s)	435, 1795, 2352
BccI	CCATC	9 cut(s)	113, 614, 885, 1301, 1474, 1908, 2110, 2718, 3018
BceAI	ACGGC	1 cut(s)	2344
BciT130I	CCWGG	5 cut(s)	323, 331, 566, 1670, 2649
BclI	TGATCA	1 cut(s)	1321
BcnI	CCSGG	1 cut(s)	1686
BcoDI	GTCTC	3 cut(s)	312, 1773, 2928
BcuI	ACTAGT	1 cut(s)	1661
BfaI	CTAG	7 cut(s)	344, 1220, 1467, 1662, 1757, 2363, 2858
BfoI	RGCGCY	1 cut(s)	1885
BfuAI	ACCTGC	1 cut(s)	261
Bme1390I	CCNGG	6 cut(s)	323, 331, 566, 1670, 1686, 2649
Bme18I	GGWCC	3 cut(s)	737, 1216, 2680
BmeT110I	CYCGRG	1 cut(s)	606
BmgT120I	GGNCC	6 cut(s)	367, 368, 737, 1216, 1495, 2680
BmiI	GGNNCC	5 cut(s)	368, 369, 562, 738, 1683
BmrFI	CCNGG	6 cut(s)	323, 331, 566, 1670, 1686, 2649
BmtI	GCTAGC	1 cut(s)	2861
BpiI	GAAGAC	1 cut(s)	677
BplI	GAGNNNNNCTC	2 cut(s)	2339, 2371
Bpu10I	CCTNAGC	2 cut(s)	1653, 1942
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	1686
BsaAI	YACGTR	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	3000
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	5 cut(s)	131, 178, 564, 1685, 2374
Bsc4I	CCNNNNNNNGG	5 cut(s)	322, 363, 364, 2589, 2904
Bse1I	ACTGG	3 cut(s)	438, 2587, 3053
Bse21I	CCTNAGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	3000
BseBI	CCWGG	5 cut(s)	323, 331, 566, 1670, 2649
BseDI	CCNNGG	5 cut(s)	131, 178, 564, 1685, 2374
BseJI	GATNNNNATC	1 cut(s)	3000
BseLI	CCNNNNNNNGG	5 cut(s)	322, 363, 364, 2589, 2904
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	6 cut(s)	225, 601, 1396, 1866, 2046, 2331
BseNI	ACTGG	3 cut(s)	438, 2587, 3053
BseRI	GAGGAG	3 cut(s)	79, 830, 1348
BseSI	GKGCMC	4 cut(s)	193, 371, 1061, 1795
BseYI	CCCAGC	2 cut(s)	362, 841
BsgI	GTGCAG	1 cut(s)	1803
Bsh1236I	CGCG	1 cut(s)	2382
BshFI	GGCC	5 cut(s)	369, 402, 1496, 1658, 2379
BshNI	GGYRCC	2 cut(s)	560, 1681
BsiHKAI	GWGCWC	3 cut(s)	435, 1795, 2352
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	409, 1685
BslFI	GGGAC	3 cut(s)	408, 2498, 2765
BslI	CCNNNNNNNGG	5 cut(s)	322, 363, 364, 2589, 2904
BsmAI	GTCTC	3 cut(s)	312, 1773, 2928
BsmFI	GGGAC	3 cut(s)	408, 2498, 2765
BsmI	GAATGC	5 cut(s)	224, 340, 1543, 2149, 2578
BsnI	GGCC	5 cut(s)	369, 402, 1496, 1658, 2379
Bso31I	GGTCTC	1 cut(s)	312
BsoBI	CYCGRG	1 cut(s)	606
Bsp119I	TTCGAA	1 cut(s)	263
Bsp120I	GGGCCC	1 cut(s)	367
Bsp1286I	GDGCHC	8 cut(s)	193, 371, 435, 1061, 1795, 2352, 2458, 2836
Bsp1407I	TGTACA	2 cut(s)	1764, 2448
Bsp143I	GATC	5 cut(s)	1001, 1321, 1522, 2343, 2760
Bsp19I	CCATGG	1 cut(s)	131
BspACI	CCGC	8 cut(s)	148, 153, 412, 1260, 1490, 2079, 2380, 2547
BspANI	GGCC	5 cut(s)	369, 402, 1496, 1658, 2379
BspCNI	CTCAG	6 cut(s)	224, 600, 1395, 1865, 2045, 2332
BspFNI	CGCG	1 cut(s)	2382
BspHI	TCATGA	2 cut(s)	1606, 2208
BspLI	GGNNCC	5 cut(s)	368, 369, 562, 738, 1683
BspMI	ACCTGC	1 cut(s)	261
BspOI	GCTAGC	1 cut(s)	2861
BspPI	GGATC	1 cut(s)	2768
BspT104I	TTCGAA	1 cut(s)	263
BspT107I	GGYRCC	2 cut(s)	560, 1681
BspTNI	GGTCTC	1 cut(s)	312
BsrBI	CCGCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	156
BsrGI	TGTACA	2 cut(s)	1764, 2448
BsrI	ACTGG	3 cut(s)	438, 2587, 3053
BssECI	CCNNGG	5 cut(s)	131, 178, 564, 1685, 2374
BssMI	GATC	5 cut(s)	1001, 1321, 1522, 2343, 2760
BssT1I	CCWWGG	2 cut(s)	131, 2374
Bst2UI	CCWGG	5 cut(s)	323, 331, 566, 1670, 2649
Bst4CI	ACNGT	5 cut(s)	1022, 1418, 1574, 1648, 1801
Bst6I	CTCTTC	5 cut(s)	83, 130, 586, 1368, 2811
BstAPI	GCANNNNNTGC	2 cut(s)	353, 1649
BstAUI	TGTACA	2 cut(s)	1764, 2448
BstBAI	YACGTR	1 cut(s)	282
BstBI	TTCGAA	1 cut(s)	263
BstDSI	CCRYGG	1 cut(s)	131
BstEII	GGTNACC	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	2382
BstH2I	RGCGCY	1 cut(s)	1885
BstHHI	GCGC	2 cut(s)	1884, 2384
BstKTI	GATC	5 cut(s)	1004, 1324, 1525, 2346, 2763
BstMAI	GTCTC	3 cut(s)	312, 1773, 2928
BstMBI	GATC	5 cut(s)	1001, 1321, 1522, 2343, 2760
BstMWI	GCNNNNNNNGC	7 cut(s)	344, 353, 475, 484, 833, 1649, 2186
BstNI	CCWGG	5 cut(s)	323, 331, 566, 1670, 2649
BstNSI	RCATGY	3 cut(s)	1156, 2006, 2068
BstPI	GGTNACC	1 cut(s)	325
BstSCI	CCNGG	6 cut(s)	321, 329, 564, 1668, 1684, 2647
BstSLI	GKGCMC	4 cut(s)	193, 371, 1061, 1795
BstUI	CGCG	1 cut(s)	2382
BstV2I	GAAGAC	1 cut(s)	677
BstXI	CCANNNNNNTGG	1 cut(s)	2155
Bsu36I	CCTNAGG	1 cut(s)	211
BsuRI	GGCC	5 cut(s)	369, 402, 1496, 1658, 2379
BtgI	CCRYGG	1 cut(s)	131
BtsIMutI	CAGTG	4 cut(s)	757, 1027, 1390, 2594
BveI	ACCTGC	1 cut(s)	261
CciI	TCATGA	2 cut(s)	1606, 2208
CfoI	GCGC	2 cut(s)	1884, 2384
Cfr13I	GGNCC	6 cut(s)	367, 368, 737, 1216, 1495, 2680
CsiI	ACCWGGT	2 cut(s)	321, 2647
Csp6I	GTAC	5 cut(s)	517, 561, 1682, 1765, 2449
CviQI	GTAC	5 cut(s)	517, 561, 1682, 1765, 2449
DpnI	GATC	5 cut(s)	1003, 1323, 1524, 2345, 2762
DpnII	GATC	5 cut(s)	1001, 1321, 1522, 2343, 2760
EaeI	YGGCCR	1 cut(s)	2377
Eam1104I	CTCTTC	5 cut(s)	83, 130, 586, 1368, 2811
EarI	CTCTTC	5 cut(s)	83, 130, 586, 1368, 2811
EciI	GGCGGA	2 cut(s)	142, 1505
Eco130I	CCWWGG	2 cut(s)	131, 2374
Eco24I	GRGCYC	3 cut(s)	371, 2458, 2836
Eco31I	GGTCTC	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	1242
Eco47I	GGWCC	3 cut(s)	737, 1216, 2680
Eco57I	CTGAAG	4 cut(s)	671, 2202, 2310, 2736
Eco81I	CCTNAGG	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	606
Eco91I	GGTNACC	1 cut(s)	325
EcoO109I	RGGNCCY	4 cut(s)	367, 368, 737, 1495
EcoO65I	GGTNACC	1 cut(s)	325
EcoRII	CCWGG	5 cut(s)	321, 329, 564, 1668, 2647
EcoRV	GATATC	1 cut(s)	1242
EcoT14I	CCWWGG	2 cut(s)	131, 2374
EcoT38I	GRGCYC	3 cut(s)	371, 2458, 2836
ErhI	CCWWGG	2 cut(s)	131, 2374
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	3 cut(s)	408, 2498, 2765
FauNDI	CATATG	3 cut(s)	670, 829, 2551
FbaI	TGATCA	1 cut(s)	1321
FriOI	GRGCYC	3 cut(s)	371, 2458, 2836
FspBI	CTAG	7 cut(s)	344, 1220, 1467, 1662, 1757, 2363, 2858
GlaI	GCGC	2 cut(s)	1883, 2383
GsaI	CCCAGC	2 cut(s)	366, 845
HaeII	RGCGCY	1 cut(s)	1885
HaeIII	GGCC	5 cut(s)	369, 402, 1496, 1658, 2379
HapII	CCGG	2 cut(s)	409, 1685
HhaI	GCGC	2 cut(s)	1884, 2384
Hin6I	GCGC	2 cut(s)	1882, 2382
HinP1I	GCGC	2 cut(s)	1882, 2382
HincII	GTYRAC	3 cut(s)	207, 1744, 2062
HindII	GTYRAC	3 cut(s)	207, 1744, 2062
HindIII	AAGCTT	2 cut(s)	2292, 2433
HinfI	GANTC	8 cut(s)	396, 422, 775, 1087, 1274, 1603, 2205, 2540
HpaI	GTTAAC	2 cut(s)	207, 1744
HpaII	CCGG	2 cut(s)	409, 1685
HphI	GGTGA	7 cut(s)	244, 319, 427, 580, 971, 2777, 3053
Hpy166II	GTNNAC	9 cut(s)	207, 1177, 1216, 1388, 1744, 1793, 1839, 2062, 2602
Hpy8I	GTNNAC	9 cut(s)	207, 1177, 1216, 1388, 1744, 1793, 1839, 2062, 2602
HpyAV	CCTTC	9 cut(s)	74, 80, 791, 1364, 1604, 1871, 2084, 2106, 2765
HpyCH4III	ACNGT	5 cut(s)	1022, 1418, 1574, 1648, 1801
HpyCH4IV	ACGT	2 cut(s)	281, 1028
HpyF10VI	GCNNNNNNNGC	7 cut(s)	344, 353, 475, 484, 833, 1649, 2186
HpySE526I	ACGT	2 cut(s)	281, 1028
HspAI	GCGC	2 cut(s)	1882, 2382
KpnI	GGTACC	2 cut(s)	564, 1685
Ksp22I	TGATCA	1 cut(s)	1321
KspAI	GTTAAC	2 cut(s)	207, 1744
Kzo9I	GATC	5 cut(s)	1001, 1321, 1522, 2343, 2760
LmnI	GCTCC	5 cut(s)	155, 1361, 2127, 3027, 3038
MabI	ACCWGGT	2 cut(s)	321, 2647
MaeI	CTAG	7 cut(s)	344, 1220, 1467, 1662, 1757, 2363, 2858
MaeII	ACGT	2 cut(s)	281, 1028
MaeIII	GTNAC	6 cut(s)	325, 1024, 1553, 1574, 2081, 2239
MalI	GATC	5 cut(s)	1003, 1323, 1524, 2345, 2762
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	5 cut(s)	1001, 1321, 1522, 2343, 2760
MfeI	CAATTG	1 cut(s)	1332
MhlI	GDGCHC	8 cut(s)	193, 371, 435, 1061, 1795, 2352, 2458, 2836
MlyI	GAGTC	4 cut(s)	390, 431, 2214, 2534
MmeI	TCCRAC	8 cut(s)	46, 123, 516, 936, 991, 2001, 2639, 2721
MroXI	GAANNNNTTC	1 cut(s)	1392
MseI	TTAA	6 cut(s)	206, 597, 1346, 1515, 1743, 2913
MslI	CAYNNNNRTG	9 cut(s)	254, 726, 1383, 1401, 1611, 1704, 2007, 2153, 2175
MspI	CCGG	2 cut(s)	409, 1685
MspR9I	CCNGG	6 cut(s)	323, 331, 566, 1670, 1686, 2649
MunI	CAATTG	1 cut(s)	1332
Mva1269I	GAATGC	5 cut(s)	224, 340, 1543, 2149, 2578
MvaI	CCWGG	5 cut(s)	323, 331, 566, 1670, 2649
MvnI	CGCG	1 cut(s)	2382
MwoI	GCNNNNNNNGC	7 cut(s)	344, 353, 475, 484, 833, 1649, 2186
NciI	CCSGG	1 cut(s)	1686
NcoI	CCATGG	1 cut(s)	131
NdeI	CATATG	3 cut(s)	670, 829, 2551
NdeII	GATC	5 cut(s)	1001, 1321, 1522, 2343, 2760
NheI	GCTAGC	1 cut(s)	2857
NlaIV	GGNNCC	5 cut(s)	368, 369, 562, 738, 1683
NmeAIII	GCCGAG	2 cut(s)	159, 378
NmuCI	GTSAC	3 cut(s)	325, 1024, 1574
NspI	RCATGY	3 cut(s)	1156, 2006, 2068
NspV	TTCGAA	1 cut(s)	263
PagI	TCATGA	2 cut(s)	1606, 2208
PciI	ACATGT	2 cut(s)	1152, 2064
PcsI	WCGNNNNNNNCGW	1 cut(s)	3010
PctI	GAATGC	5 cut(s)	224, 340, 1543, 2149, 2578
PdmI	GAANNNNTTC	1 cut(s)	1392
PfeI	GAWTC	4 cut(s)	775, 1087, 1274, 1603
PflFI	GACNNNGTC	2 cut(s)	323, 937
PflMI	CCANNNNNTGG	1 cut(s)	2589
PleI	GAGTC	4 cut(s)	390, 430, 2213, 2534
PpsI	GAGTC	4 cut(s)	390, 430, 2213, 2534
Ppu21I	YACGTR	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	737
PscI	ACATGT	2 cut(s)	1152, 2064
PsiI	TTATAA	2 cut(s)	854, 1712
Psp5II	RGGWCCY	1 cut(s)	737
Psp6I	CCWGG	5 cut(s)	321, 329, 564, 1668, 2647
PspEI	GGTNACC	1 cut(s)	325
PspFI	CCCAGC	2 cut(s)	362, 841
PspGI	CCWGG	5 cut(s)	321, 329, 564, 1668, 2647
PspN4I	GGNNCC	5 cut(s)	368, 369, 562, 738, 1683
PspOMI	GGGCCC	1 cut(s)	367
PspPI	GGNCC	6 cut(s)	367, 368, 737, 1216, 1495, 2680
PspPPI	RGGWCCY	1 cut(s)	737
PsyI	GACNNNGTC	2 cut(s)	323, 937
RsaI	GTAC	5 cut(s)	518, 562, 1683, 1766, 2450
RsaNI	GTAC	5 cut(s)	517, 561, 1682, 1765, 2449
RseI	CAYNNNNRTG	9 cut(s)	254, 726, 1383, 1401, 1611, 1704, 2007, 2153, 2175
SaqAI	TTAA	6 cut(s)	206, 597, 1346, 1515, 1743, 2913
Sau3AI	GATC	5 cut(s)	1001, 1321, 1522, 2343, 2760
Sau96I	GGNCC	6 cut(s)	367, 368, 737, 1216, 1495, 2680
SchI	GAGTC	4 cut(s)	390, 431, 2214, 2534
ScrFI	CCNGG	6 cut(s)	323, 331, 566, 1670, 1686, 2649
SduI	GDGCHC	8 cut(s)	193, 371, 435, 1061, 1795, 2352, 2458, 2836
SexAI	ACCWGGT	2 cut(s)	321, 2647
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	3 cut(s)	737, 1216, 2680
SmiMI	CAYNNNNRTG	9 cut(s)	254, 726, 1383, 1401, 1611, 1704, 2007, 2153, 2175
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
SpeI	ACTAGT	1 cut(s)	1661
SsiI	CCGC	8 cut(s)	148, 153, 412, 1260, 1490, 2079, 2380, 2547
SspI	AATATT	1 cut(s)	2027
SspMI	CTAG	7 cut(s)	344, 1220, 1467, 1662, 1757, 2363, 2858
StyD4I	CCNGG	6 cut(s)	321, 329, 564, 1668, 1684, 2647
StyI	CCWWGG	2 cut(s)	131, 2374
TaaI	ACNGT	5 cut(s)	1022, 1418, 1574, 1648, 1801
TaiI	ACGT	2 cut(s)	284, 1031
TaqI	TCGA	7 cut(s)	263, 300, 823, 1235, 1521, 2346, 2367
TaqII	GACCGA	1 cut(s)	330
TatI	WGTACW	2 cut(s)	1764, 2448
TauI	GCSGC	2 cut(s)	415, 2382
TfiI	GAWTC	4 cut(s)	775, 1087, 1274, 1603
Tru1I	TTAA	6 cut(s)	206, 597, 1346, 1515, 1743, 2913
Tru9I	TTAA	6 cut(s)	206, 597, 1346, 1515, 1743, 2913
TscAI	CASTG	4 cut(s)	757, 1027, 1390, 2594
TseFI	GTSAC	3 cut(s)	325, 1024, 1574
Tsp45I	GTSAC	3 cut(s)	325, 1024, 1574
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	4 cut(s)	757, 1027, 1390, 2594
Tth111I	GACNNNGTC	2 cut(s)	323, 937
Van91I	CCANNNNNTGG	1 cut(s)	2589
VneI	GTGCAC	1 cut(s)	1791
VpaK11BI	GGWCC	3 cut(s)	737, 1216, 2680
XapI	RAATTY	2 cut(s)	1517, 1695
XbaI	TCTAGA	2 cut(s)	1466, 1756
XceI	RCATGY	3 cut(s)	1156, 2006, 2068
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1666, 2655
XmnI	GAANNNNTTC	1 cut(s)	1392
XspI	CTAG	7 cut(s)	344, 1220, 1467, 1662, 1757, 2363, 2858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.