Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008493

Physical Location & Seq

Genomic Coordinates Forward (+)

8774022 .. 8777120

Gene Structure 3099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG112100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTCGAACTTGGAAGATGTGCCCTCCGCCGATCTTTTCAGTGAGGTGCTTCGTCGTTTGAAGTGCTCCACCAAGCCTGACAAGCGCCTCATTCTTGTGGGTCCACCTGGCTCGGGAAAAGGTACTCAATCGCCTATTATTAAGGATGAGTACTGCTTGTGCCACTTGGCTACCGGCGATATGTTGAGATCCGCTGTTGCTGCTAAGACTCCTCTTGGCGTTAAAGCTAAGGAGGCTATGGAGAAGGGAGAACTTGTTTCTGATGACCTGGTTGTGGGCATCATTGATGAAGCATTGAAGAAGCCTTCTTGCCAGAAAGGTTTCATTCTTGATGGATTTCCGAGAACTGTGGTCCAAGCACAGAAGCTAGATGAGATGCTCCAAAATCGTGGAGTTAAGGTTGATAAGGTGCTCAACTTTGCAATTGATGACTCAATCTTGGAAGAGAGGATTACAGGTCGCTGGATTCACCCATCCAGTGGCAGAAGCTATCACACAAAATTTGCACCACCCAAGGTTCCTGGTGTTGATGATGTAAGAAGGCCACAACCTTTCATTTTAATTTTTAATTTTTTTATCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0031090 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0046940 GO:0050145 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK ADK_lid

Protein Analysis

194

Amino Acids

21.48

Weight (kDa)

8.64

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	32 - 153	9.5e-49	Adenylate kinase
AAA_17	PF13207	33 - 153	1.7e-25	AAA domain
ADK_lid	PF05191	154 - 179	3.9e-10	Adenylate kinase, active site lid

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50370 AT5G50370 AT5G63400 AT5G63400
fragaria_vesca	FvH4_5g07870
malus_domestica	MD06G1145300.v1.1 MD14G1160000.v1.1
prunus_persica	Prupe.5G153600_v2.0.a1 Prupe.5G153600_v2.0.a1
pyrus_communis	pycom06g13460 pycom14g13350
rosa_chinensis	RchiOBHm_Chr7g0190591
rosa_laevigata	RLG00000004512
rosa_multiflora	Rmu_co8305173.1_g000001 Rmu_sc0006709.1_g000012
rosa_roxburghii	Rroxscaffold_3G00264480
rosa_rugosa	Rorug06G0505500 Rorug06G0505600
rosa_samantha	Rh7AG112100 Rh7BG114900
rosa_wichuraiana	Rw4G010280 Rw7G009780 Rw7G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	479
AciI	CCGC	2 cut(s)	27, 192
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	500
AfaI	GTAC	2 cut(s)	124, 152
AfiI	CCNNNNNNNGG	3 cut(s)	113, 274, 479
AgsI	TTSAA	2 cut(s)	61, 298
AjnI	CCWGG	3 cut(s)	106, 267, 520
AluBI	AGCT	3 cut(s)	227, 367, 489
AluI	AGCT	3 cut(s)	227, 367, 489
Alw21I	GWGCWC	2 cut(s)	68, 414
AlwI	GGATC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	500
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	101, 352
AsuHPI	GGTGA	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	101, 352
BaeGI	GKGCMC	1 cut(s)	24
Bbv12I	GWGCWC	2 cut(s)	68, 414
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	2 cut(s)	326, 481
BciT130I	CCWGG	3 cut(s)	108, 269, 522
BfaI	CTAG	1 cut(s)	368
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	3 cut(s)	108, 269, 522
Bme18I	GGWCC	2 cut(s)	101, 352
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	101, 352
BmiI	GGNNCC	2 cut(s)	102, 519
BmrFI	CCNGG	3 cut(s)	108, 269, 522
BmsI	GCATC	2 cut(s)	288, 366
Bpu10I	CCTNAGC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	513
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 384, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 274, 479
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	477
BseBI	CCWGG	3 cut(s)	108, 269, 522
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	151, 473
BseLI	CCNNNNNNNGG	3 cut(s)	113, 274, 479
BseNI	ACTGG	1 cut(s)	477
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	544
BsiHKAI	GWGCWC	2 cut(s)	68, 414
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	3 cut(s)	113, 274, 479
BsnI	GGCC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	3 cut(s)	24, 68, 414
Bsp143I	GATC	2 cut(s)	31, 188
BspACI	CCGC	2 cut(s)	27, 192
BspANI	GGCC	1 cut(s)	544
BspLI	GGNNCC	2 cut(s)	102, 519
BspPI	GGATC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	477
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	2 cut(s)	31, 188
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	3 cut(s)	108, 269, 522
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	204, 228
BstF5I	GGATG	2 cut(s)	151, 473
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	2 cut(s)	34, 191
BstMBI	GATC	2 cut(s)	31, 188
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 200, 233
BstNI	CCWGG	3 cut(s)	108, 269, 522
BstSCI	CCNGG	3 cut(s)	106, 267, 520
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	188
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	151, 473
BtsIMutI	CAGTG	2 cut(s)	46, 484
CfoI	GCGC	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	101, 352
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	123, 151
CviJI	RGCY	9 cut(s)	76, 111, 170, 227, 236, 304, 367, 489, 544
CviKI_1	RGCY	9 cut(s)	76, 111, 170, 227, 236, 304, 367, 489, 544
CviQI	GTAC	2 cut(s)	123, 151
DdeI	CTNAG	2 cut(s)	204, 228
DpnI	GATC	2 cut(s)	33, 190
DpnII	GATC	2 cut(s)	31, 188
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	513
Eco47I	GGWCC	2 cut(s)	101, 352
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	3 cut(s)	106, 267, 520
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaiI	YATR	2 cut(s)	182, 239
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	158, 460
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	544
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	87
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	208, 431, 466
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	262, 342
Hpy188III	TCNNGA	2 cut(s)	114, 329
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	3 cut(s)	238, 315, 534
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	2 cut(s)	422, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 200, 233
HpyF3I	CTNAG	2 cut(s)	204, 228
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	31, 188
LmnI	GCTCC	2 cut(s)	71, 384
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	2 cut(s)	288, 366
MabI	ACCWGGT	1 cut(s)	267
MaeI	CTAG	1 cut(s)	368
MalI	GATC	2 cut(s)	33, 190
MboI	GATC	2 cut(s)	31, 188
MboII	GAAGA	3 cut(s)	26, 310, 455
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	3 cut(s)	24, 68, 414
MluCI	AATT	4 cut(s)	423, 500, 561, 568
MlyI	GAGTC	2 cut(s)	202, 425
MnlI	CCTC	6 cut(s)	34, 37, 98, 222, 226, 441
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	5 cut(s)	141, 222, 396, 560, 567
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	3 cut(s)	108, 269, 522
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	3 cut(s)	108, 269, 522
MwoI	GCNNNNNNNGC	3 cut(s)	82, 200, 233
NdeII	GATC	2 cut(s)	31, 188
NlaIV	GGNNCC	2 cut(s)	102, 519
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	2 cut(s)	202, 425
PpsI	GAGTC	2 cut(s)	202, 425
Psp6I	CCWGG	3 cut(s)	106, 267, 520
PspGI	CCWGG	3 cut(s)	106, 267, 520
PspN4I	GGNNCC	2 cut(s)	102, 519
PspPI	GGNCC	2 cut(s)	101, 352
PsuI	RGATCY	1 cut(s)	188
RsaI	GTAC	2 cut(s)	124, 152
RsaNI	GTAC	2 cut(s)	123, 151
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	5 cut(s)	141, 222, 396, 560, 567
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	31, 188
Sau96I	GGNCC	2 cut(s)	101, 352
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	2 cut(s)	202, 425
ScrFI	CCNGG	3 cut(s)	108, 269, 522
SduI	GDGCHC	3 cut(s)	24, 68, 414
SexAI	ACCWGGT	1 cut(s)	267
SfaNI	GCATC	2 cut(s)	288, 366
SinI	GGWCC	2 cut(s)	101, 352
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	4 cut(s)	423, 500, 561, 568
SsiI	CCGC	2 cut(s)	27, 192
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	3 cut(s)	106, 267, 520
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	5
TasI	AATT	4 cut(s)	423, 500, 561, 568
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	5 cut(s)	141, 222, 396, 560, 567
Tru9I	TTAA	5 cut(s)	141, 222, 396, 560, 567
TscAI	CASTG	2 cut(s)	46, 484
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	303, 313, 544
TspRI	CASTG	2 cut(s)	46, 484
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	101, 352
XapI	RAATTY	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	1 cut(s)	368
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.