Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006890

Physical Location & Seq

Genomic Coordinates Forward (+)

20781658 .. 20784071

Gene Structure 2414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGTCGGGACAACGATCAGAAGAAGAATAAGAAGAAGAGAAACAGAAGTAATGAGAATGAGAAGAGTGTTGAGAAAGTAGTTGCTAATGAAGAGAAAGTCCCAACACAGCAGAAGCAGAAGCAACAACAAGGACAACAAGGAAATTGTAATCAAAGCAAGAAGAAGAAGAATCAAGAAGTTTATCCCTTCGGAAATTACAGAAACTACTATGGCTACCGAATAAGCAATGACACGGATGAGGATCCTCGGCTTAAAGTGTTGAAGAAGGAATGGTTTGAAGGCAAAGACTGTCTTGACATTGGCTGCAACAGCGGCATCATGACTATTCATATTGCAAAAAAGTTCGGTTGCCGGAGCATTCTTGGAGTTGACATTGATACAAGTCGCATTGAGGATGCTCACTGGCATCTTAGGAAGTTTGTCAGAATGCAGAATTCTACTAAGCCTAGTGAAAAGAAATCTAGTTCTGAGGGTGCCGATGGAGTACATGGATCGAAGGAGCCATCTGTTTCTCTCTCCAATGGCGAGGCAAAGGCAGATAGTGCAGAAACTAAAGACTTGTCTCAGATTGTGTCGTTTCAGAAAGAGAATTTTGTTCAAACCCGAAATCTTGACGACAATCGTTATGATACAATTCTATGTTTGAGTGTGACAAAATGGGTTCATTTGAACTGGGGTGATGATGGTTTAATCACCTTATTTTCAAAGATTTGGCGTCTTCTTCAACCGGGTGGTATCTTTGTAATGGAACCTCAGCCTTGGAAATCTTATGAAAACAATCGTCGTGTCTCAGAGACAACTGCAATGAATTACCGAACGATTGTTTTACGACCAGACCGTTTCCAAGAAATTCTTCTTGATAAGATTGGGTTTAGAACAGTGGAAGATCTTACATCAAGCTTGTCCGGTGCAAGCAAAGGGTTTGATAGACAGATTCTTGCGTTCCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016073 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0034660 GO:0040031 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bin3 Methyltransf_18 Methyltransf_4 PrmA

Protein Analysis

318

Amino Acids

36.6

Weight (kDa)

9.28

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	92 - 252	3.7e-10	Methyltransferase domain
Bin3	PF06859	210 - 318	3.3e-43	Bicoid-interacting protein 3 (Bin3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51130 AT5G51130
fragaria_vesca	FvH4_1g05710 FvH4_1g05710
malus_domestica	MD02G1058100.v1.1 MD02G1058200.v1.1 MD15G1192600.v1.1
prunus_persica	Prupe.7G224700_v2.0.a1
pyrus_communis	pycom02g04720 pycom15g17230
rosa_chinensis	RchiOBHm_Chr2g0091361
rosa_laevigata	RLG00000016215
rosa_multiflora	Rmu_sc0002270.1_g000052
rosa_roxburghii	Rroxscaffold_1G00004170 Rroxscaffold_2G00126060 Rroxscaffold_2G00150180 Rroxscaffold_2G00152470
rosa_rugosa	Rorug02G0016900
rosa_samantha	Rh2AG061600 Rh2BG061000 Rh2CG063100 Rh2CG415600 Rh2DG061600 Rh5AG127900 Rh7BG272900
rosa_wichuraiana	Rw2G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	476
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	3 cut(s)	239, 252, 502
AcsI	RAATTY	3 cut(s)	436, 592, 852
AcyI	GRCGYC	1 cut(s)	718
AfaI	GTAC	1 cut(s)	489
AgsI	TTSAA	6 cut(s)	265, 281, 602, 673, 708, 728
AjuI	GAANNNNNNNTTGG	2 cut(s)	840, 872
AluBI	AGCT	1 cut(s)	903
AluI	AGCT	1 cut(s)	903
Alw26I	GTCTC	3 cut(s)	570, 791, 796
AlwI	GGATC	3 cut(s)	239, 252, 502
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	3 cut(s)	436, 592, 852
Asp700I	GAANNNNTTC	1 cut(s)	855
AsuC2I	CCSGG	1 cut(s)	732
AsuHPI	GGTGA	2 cut(s)	688, 692
BamHI	GGATCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	713
BbvCI	CCTCAGC	1 cut(s)	756
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	3 cut(s)	476, 514, 680
BcnI	CCSGG	1 cut(s)	732
BcoDI	GTCTC	3 cut(s)	570, 791, 796
BfaI	CTAG	2 cut(s)	450, 465
BglII	AGATCT	1 cut(s)	889
BisI	GCNGC	2 cut(s)	307, 316
BlsI	GCNGC	2 cut(s)	308, 317
Bme1390I	CCNGG	1 cut(s)	732
BmiI	GGNNCC	4 cut(s)	246, 478, 504, 753
BmrFI	CCNGG	1 cut(s)	732
BmrI	ACTGGG	1 cut(s)	685
BmsI	GCATC	3 cut(s)	327, 388, 418
BmuI	ACTGGG	1 cut(s)	685
BpiI	GAAGAC	1 cut(s)	713
Bpu10I	CCTNAGC	1 cut(s)	756
BpuMI	CCSGG	1 cut(s)	732
BsaBI	GATNNNNATC	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	718
BsaJI	CCNNGG	2 cut(s)	248, 761
BsaWI	WCCGGW	1 cut(s)	908
Bse1I	ACTGG	2 cut(s)	410, 680
Bse3DI	GCAATG	2 cut(s)	235, 813
Bse8I	GATNNNNATC	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	248, 761
BseGI	GGATG	2 cut(s)	244, 403
BseJI	GATNNNNATC	1 cut(s)	243
BseMI	GCAATG	2 cut(s)	235, 813
BseMII	CTCAG	4 cut(s)	462, 581, 770, 807
BseNI	ACTGG	2 cut(s)	410, 680
BseXI	GCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	567
BshNI	GGYRCC	1 cut(s)	476
BsiSI	CCGG	3 cut(s)	355, 731, 909
BslFI	GGGAC	2 cut(s)	23, 86
BsmAI	GTCTC	3 cut(s)	570, 791, 796
BsmFI	GGGAC	2 cut(s)	23, 86
BsmI	GAATGC	2 cut(s)	360, 435
Bsp143I	GATC	4 cut(s)	16, 244, 494, 889
BspACI	CCGC	1 cut(s)	315
BspCNI	CTCAG	4 cut(s)	463, 580, 769, 806
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	4 cut(s)	246, 478, 504, 753
BspPI	GGATC	3 cut(s)	239, 252, 502
BspT107I	GGYRCC	1 cut(s)	476
BsrDI	GCAATG	2 cut(s)	235, 813
BsrI	ACTGG	2 cut(s)	410, 680
BssECI	CCNNGG	2 cut(s)	248, 761
BssMI	GATC	4 cut(s)	16, 244, 494, 889
BssNI	GRCGYC	1 cut(s)	718
BssT1I	CCWWGG	1 cut(s)	761
Bst4CI	ACNGT	3 cut(s)	293, 842, 883
Bst6I	CTCTTC	3 cut(s)	32, 59, 87
BstACI	GRCGYC	1 cut(s)	718
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	916
BstDEI	CTNAG	6 cut(s)	413, 444, 471, 567, 756, 793
BstF5I	GGATG	2 cut(s)	244, 403
BstKTI	GATC	4 cut(s)	19, 247, 497, 892
BstMAI	GTCTC	3 cut(s)	570, 791, 796
BstMBI	GATC	4 cut(s)	16, 244, 494, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	312, 315, 545
BstSCI	CCNGG	1 cut(s)	730
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	713
BstX2I	RGATCY	2 cut(s)	244, 889
BstYI	RGATCY	2 cut(s)	244, 889
BtsCI	GGATG	2 cut(s)	244, 403
BtsIMutI	CAGTG	2 cut(s)	403, 888
Cac8I	GCNNGC	1 cut(s)	916
CciI	TCATGA	1 cut(s)	321
CseI	GACGC	1 cut(s)	707
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	2 cut(s)	322, 491
CviJI	RGCY	7 cut(s)	216, 253, 306, 448, 505, 760, 903
CviKI_1	RGCY	7 cut(s)	216, 253, 306, 448, 505, 760, 903
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	6 cut(s)	413, 444, 471, 567, 756, 793
DpnI	GATC	4 cut(s)	18, 246, 496, 891
DpnII	GATC	4 cut(s)	16, 244, 494, 889
Eam1104I	CTCTTC	3 cut(s)	32, 59, 87
EarI	CTCTTC	3 cut(s)	32, 59, 87
Eco130I	CCWWGG	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	761
ErhI	CCWWGG	1 cut(s)	761
FaeI	CATG	2 cut(s)	325, 494
FaiI	YATR	7 cut(s)	213, 323, 333, 492, 630, 643, 774
FalI	AAGNNNNNCTT	4 cut(s)	279, 311, 840, 872
FaqI	GGGAC	2 cut(s)	23, 86
FatI	CATG	2 cut(s)	321, 490
Fnu4HI	GCNGC	2 cut(s)	307, 316
FokI	GGATG	2 cut(s)	251, 410
Fsp4HI	GCNGC	2 cut(s)	307, 316
FspBI	CTAG	2 cut(s)	450, 465
GluI	GCNGC	2 cut(s)	307, 316
HapII	CCGG	3 cut(s)	355, 731, 909
HgaI	GACGC	1 cut(s)	707
Hin1I	GRCGYC	1 cut(s)	718
Hin1II	CATG	2 cut(s)	325, 494
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	901
HinfI	GANTC	2 cut(s)	172, 937
HpaII	CCGG	3 cut(s)	355, 731, 909
HphI	GGTGA	2 cut(s)	688, 692
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	7 cut(s)	21, 194, 428, 472, 570, 585, 796
Hpy188III	TCNNGA	7 cut(s)	8, 176, 296, 322, 614, 860, 949
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	789
HpyAV	CCTTC	4 cut(s)	199, 262, 275, 493
HpyCH4III	ACNGT	3 cut(s)	293, 842, 883
HpyCH4V	TGCA	6 cut(s)	309, 338, 433, 548, 806, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	312, 315, 545
HpyF3I	CTNAG	6 cut(s)	413, 444, 471, 567, 756, 793
Hsp92I	GRCGYC	1 cut(s)	718
Hsp92II	CATG	2 cut(s)	325, 494
Kzo9I	GATC	4 cut(s)	16, 244, 494, 889
LmnI	GCTCC	2 cut(s)	357, 502
LpnPI	CCDG	6 cut(s)	368, 391, 661, 744, 849, 922
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	3 cut(s)	327, 388, 418
MaeI	CTAG	2 cut(s)	450, 465
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	4 cut(s)	18, 246, 496, 891
MboI	GATC	4 cut(s)	16, 244, 494, 889
MflI	RGATCY	2 cut(s)	244, 889
MluCI	AATT	7 cut(s)	145, 196, 436, 592, 636, 811, 852
MnlI	CCTC	6 cut(s)	235, 258, 388, 466, 523, 765
MroXI	GAANNNNTTC	1 cut(s)	855
MseI	TTAA	2 cut(s)	255, 692
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	3 cut(s)	355, 731, 909
MspR9I	CCNGG	1 cut(s)	732
Mva1269I	GAATGC	2 cut(s)	360, 435
MwoI	GCNNNNNNNGC	3 cut(s)	312, 315, 545
NciI	CCSGG	1 cut(s)	732
NdeII	GATC	4 cut(s)	16, 244, 494, 889
NlaIII	CATG	2 cut(s)	325, 494
NlaIV	GGNNCC	4 cut(s)	246, 478, 504, 753
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	652
PagI	TCATGA	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	838
PctI	GAATGC	2 cut(s)	360, 435
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	2 cut(s)	172, 937
PkrI	GCNGC	2 cut(s)	308, 317
PspN4I	GGNNCC	4 cut(s)	246, 478, 504, 753
PsuI	RGATCY	2 cut(s)	244, 889
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	255, 692
SatI	GCNGC	2 cut(s)	307, 316
Sau3AI	GATC	4 cut(s)	16, 244, 494, 889
ScrFI	CCNGG	1 cut(s)	732
SetI	ASST	3 cut(s)	701, 757, 905
SfaNI	GCATC	3 cut(s)	327, 388, 418
Sse9I	AATT	7 cut(s)	145, 196, 436, 592, 636, 811, 852
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	2 cut(s)	450, 465
StyD4I	CCNGG	1 cut(s)	730
StyI	CCWWGG	1 cut(s)	761
TaaI	ACNGT	3 cut(s)	293, 842, 883
TaqI	TCGA	1 cut(s)	497
TasI	AATT	7 cut(s)	145, 196, 436, 592, 636, 811, 852
TatI	WGTACW	1 cut(s)	487
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	172, 937
Tru1I	TTAA	2 cut(s)	255, 692
Tru9I	TTAA	2 cut(s)	255, 692
TscAI	CASTG	2 cut(s)	410, 888
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	5 cut(s)	105, 320, 656, 789, 824
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	410, 888
XapI	RAATTY	3 cut(s)	436, 592, 852
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	2 cut(s)	450, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.