Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006890

Physical Location & Seq

Genomic Coordinates Forward (+)

19959240 .. 19963377

Gene Structure 4138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G224700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCCAGAAGATTCCGCCATGTGCAGCAAACAGAAAGAGAAGAAGGGCGCAGAGGAACGCGAACAACAACATGTACAGAACAAAAGTAAGAAGCGCAAAGAGATTTGCCCTTACGGAAACTACAAACACTACTACGGCTATCGAATTGGTCAAGAACTGGAGGAAGATCCTAGATTGAAGGTTTTCAAGAAGGAATGGTTCCAAGGCAAGGATTGTCTCGACATTGGCTGCAATTCTGGAATTATGACCATTCAAATTGCCAAAAAATTCTGCTGCCAGAGCATTCTTGGAGTTGACATTGACGCCAATCGAATTCAGGATGCATACTGGCACATCAGGAAATTTTTGAAAATGGAGGATGCTAGAAAGGTGCCTGGAAAGTCTTCTAAGTTGGAGGATGCAAATGGTTCAGAGAGCAGTATCAAAGGTTCATTAAAGGAAGAGATGAAGGAGATCCCAAGGAATTGTTGTGCTGAGGAGAAAAATCTGCTTGACATGGTATCTTTCCAAAAAGAAGATTTTGTTAATACTCGTGATCCACCAAAGAAGCATTATGATACCATTCTTTGTTTGAGTGTAACAAAATGGATTCATTTGAATTGGGGTGATGATGGATTGATTACATTATTTACAAAGGTTTGGAGGCTACTAAGTCCGGGTGGAATTTTTGTGTTGGAACCTCAACCTTGGAAGTCATATGAAAATAATTACAAAGTTTCTGAGACAACCAGAACCAATTATAAAAATCTTAAGTTCCATCCGGAGTATTTTCAAGACTTACTTCTGGACAAGATTGGATTTAAAACAGTGGAGAATGTCACTTCCAGCGTGTCGGGCAGCAAAACTGGATTCAACAGACCAATTTTAGTGTTCCGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016073 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0034660 GO:0040031 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bin3 Methyltransf_18 Methyltransf_4 PrmA

Protein Analysis

294

Amino Acids

34.09

Weight (kDa)

8.94

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51130 AT5G51130
fragaria_vesca	FvH4_1g05710 FvH4_1g05710
malus_domestica	MD02G1058100.v1.1 MD02G1058200.v1.1 MD15G1192600.v1.1
prunus_persica	Prupe.7G224700_v2.0.a1
pyrus_communis	pycom02g04720 pycom15g17230
rosa_chinensis	RchiOBHm_Chr2g0091361
rosa_laevigata	RLG00000016215
rosa_multiflora	Rmu_sc0002270.1_g000052
rosa_roxburghii	Rroxscaffold_1G00004170 Rroxscaffold_2G00126060 Rroxscaffold_2G00150180 Rroxscaffold_2G00152470
rosa_rugosa	Rorug02G0016900
rosa_samantha	Rh2AG061600 Rh2BG061000 Rh2CG063100 Rh2CG415600 Rh2DG061600 Rh5AG127900 Rh7BG272900
rosa_wichuraiana	Rw2G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AccB1I	GGYRCC	1 cut(s)	370
AccII	CGCG	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	760
AciI	CCGC	2 cut(s)	15, 874
AclWI	GGATC	3 cut(s)	161, 448, 530
AcsI	RAATTY	4 cut(s)	266, 312, 341, 663
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflII	CTTAAG	1 cut(s)	749
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	7 cut(s)	178, 187, 254, 349, 598, 773, 853
AjnI	CCWGG	1 cut(s)	373
Alw26I	GTCTC	2 cut(s)	221, 716
AlwI	GGATC	3 cut(s)	161, 448, 530
Aor13HI	TCCGGA	1 cut(s)	760
ApeKI	GCWGC	4 cut(s)	24, 228, 273, 837
ApoI	RAATTY	4 cut(s)	266, 312, 341, 663
Asp700I	GAANNNNTTC	2 cut(s)	182, 382
AspLEI	GCGC	2 cut(s)	50, 96
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	1 cut(s)	617
BanI	GGYRCC	1 cut(s)	370
BauI	CACGAG	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	4 cut(s)	36, 215, 260, 849
BccI	CCATC	2 cut(s)	605, 765
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	221, 716
BfaI	CTAG	2 cut(s)	171, 363
BfrI	CTTAAG	1 cut(s)	749
BisI	GCNGC	4 cut(s)	25, 229, 274, 838
BlsI	GCNGC	4 cut(s)	26, 230, 275, 839
Bme1390I	CCNGG	2 cut(s)	375, 657
BmiI	GGNNCC	3 cut(s)	200, 372, 678
BmrFI	CCNGG	2 cut(s)	375, 657
BmsI	GCATC	3 cut(s)	310, 349, 388
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	474
BpuMI	CCSGG	1 cut(s)	657
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	202, 458, 686
BsaWI	WCCGGW	1 cut(s)	760
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	3 cut(s)	162, 332, 850
BseAI	TCCGGA	1 cut(s)	760
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	202, 458, 686
BseGI	GGATG	4 cut(s)	325, 364, 403, 757
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	465, 711
BseNI	ACTGG	3 cut(s)	162, 332, 850
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	4 cut(s)	36, 215, 260, 849
BsgI	GTGCAG	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	370
BsiSI	CCGG	2 cut(s)	656, 761
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	2 cut(s)	221, 716
BsmI	GAATGC	1 cut(s)	282
Bsp13I	TCCGGA	1 cut(s)	760
Bsp1407I	TGTACA	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	166, 453, 535
BspACI	CCGC	2 cut(s)	15, 874
BspCNI	CTCAG	2 cut(s)	466, 712
BspEI	TCCGGA	1 cut(s)	760
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	3 cut(s)	200, 372, 678
BspPI	GGATC	3 cut(s)	161, 448, 530
BspT107I	GGYRCC	1 cut(s)	370
BspTI	CTTAAG	1 cut(s)	749
BsrGI	TGTACA	1 cut(s)	73
BsrI	ACTGG	3 cut(s)	162, 332, 850
BssECI	CCNNGG	3 cut(s)	202, 458, 686
BssMI	GATC	3 cut(s)	166, 453, 535
BssNI	GRCGYC	1 cut(s)	303
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	3 cut(s)	202, 458, 686
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	808
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	749
BstAUI	TGTACA	1 cut(s)	73
BstDEI	CTNAG	4 cut(s)	387, 474, 650, 720
BstF5I	GGATG	4 cut(s)	325, 364, 403, 757
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	50, 96
BstKTI	GATC	3 cut(s)	169, 456, 538
BstMAI	GTCTC	2 cut(s)	221, 716
BstMBI	GATC	3 cut(s)	166, 453, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 834
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	373, 655
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	4 cut(s)	36, 215, 260, 849
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	2 cut(s)	166, 453
BstYI	RGATCY	2 cut(s)	166, 453
BtsCI	GGATG	4 cut(s)	325, 364, 403, 757
BtsIMutI	CAGTG	1 cut(s)	813
CfoI	GCGC	2 cut(s)	50, 96
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	3 cut(s)	19, 71, 496
CviJI	RGCY	3 cut(s)	138, 228, 646
CviKI_1	RGCY	3 cut(s)	138, 228, 646
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	4 cut(s)	387, 474, 650, 720
DpnI	GATC	3 cut(s)	168, 455, 537
DpnII	GATC	3 cut(s)	166, 453, 535
DraI	TTTAAA	1 cut(s)	802
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EciI	GGCGGA	1 cut(s)	4
Eco130I	CCWWGG	3 cut(s)	202, 458, 686
EcoRI	GAATTC	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	3 cut(s)	202, 458, 686
EcoT22I	ATGCAT	1 cut(s)	325
ErhI	CCWWGG	3 cut(s)	202, 458, 686
FaeI	CATG	3 cut(s)	22, 74, 499
FaiI	YATR	9 cut(s)	20, 72, 245, 325, 497, 555, 697, 699, 741
FalI	AAGNNNNNCTT	2 cut(s)	765, 797
FatI	CATG	3 cut(s)	18, 70, 495
FauNDI	CATATG	1 cut(s)	697
Fnu4HI	GCNGC	4 cut(s)	25, 229, 274, 838
FokI	GGATG	4 cut(s)	332, 371, 410, 744
Fsp4HI	GCNGC	4 cut(s)	25, 229, 274, 838
FspBI	CTAG	2 cut(s)	171, 363
GlaI	GCGC	2 cut(s)	49, 95
GluI	GCNGC	4 cut(s)	25, 229, 274, 838
GsuI	CTGGAG	1 cut(s)	179
HapII	CCGG	2 cut(s)	656, 761
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	2 cut(s)	50, 96
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	3 cut(s)	22, 74, 499
Hin6I	GCGC	2 cut(s)	48, 94
HinP1I	GCGC	2 cut(s)	48, 94
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	3 cut(s)	11, 589, 849
HpaII	CCGG	2 cut(s)	656, 761
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	412, 721
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	4 cut(s)	37, 172, 184, 442
HpyCH4III	ACNGT	1 cut(s)	808
HpyCH4V	TGCA	4 cut(s)	24, 231, 323, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 834
HpyF3I	CTNAG	4 cut(s)	387, 474, 650, 720
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	22, 74, 499
HspAI	GCGC	2 cut(s)	48, 94
Kpn2I	TCCGGA	1 cut(s)	760
Kzo9I	GATC	3 cut(s)	166, 453, 535
Lsp1109I	GCAGC	4 cut(s)	36, 215, 260, 849
LweI	GCATC	3 cut(s)	310, 349, 388
MaeI	CTAG	2 cut(s)	171, 363
MaeIII	GTNAC	2 cut(s)	577, 817
MalI	GATC	3 cut(s)	168, 455, 537
MboI	GATC	3 cut(s)	166, 453, 535
MboII	GAAGA	6 cut(s)	20, 52, 176, 375, 452, 527
MflI	RGATCY	2 cut(s)	166, 453
MmeI	TCCRAC	2 cut(s)	372, 654
MnlI	CCTC	7 cut(s)	46, 154, 349, 388, 469, 636, 690
Mph1103I	ATGCAT	1 cut(s)	325
MroI	TCCGGA	1 cut(s)	760
MroXI	GAANNNNTTC	2 cut(s)	182, 382
MseI	TTAA	4 cut(s)	434, 525, 750, 801
MspCI	CTTAAG	1 cut(s)	749
MspI	CCGG	2 cut(s)	656, 761
MspR9I	CCNGG	2 cut(s)	375, 657
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	279, 834
NciI	CCSGG	1 cut(s)	657
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	3 cut(s)	166, 453, 535
NlaIII	CATG	3 cut(s)	22, 74, 499
NlaIV	GGNNCC	3 cut(s)	200, 372, 678
NmuCI	GTSAC	1 cut(s)	817
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	74
PciI	ACATGT	1 cut(s)	70
PctI	GAATGC	1 cut(s)	282
PdmI	GAANNNNTTC	2 cut(s)	182, 382
PfeI	GAWTC	3 cut(s)	11, 589, 849
PkrI	GCNGC	4 cut(s)	26, 230, 275, 839
PscI	ACATGT	1 cut(s)	70
PsiI	TTATAA	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	3 cut(s)	200, 372, 678
PsrI	GAACNNNNNNTAC	2 cut(s)	412, 444
PsuI	RGATCY	2 cut(s)	166, 453
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	4 cut(s)	434, 525, 750, 801
SatI	GCNGC	4 cut(s)	25, 229, 274, 838
Sau3AI	GATC	3 cut(s)	166, 453, 535
ScrFI	CCNGG	2 cut(s)	375, 657
SetI	ASST	6 cut(s)	183, 372, 430, 639, 682, 688
SfaNI	GCATC	3 cut(s)	310, 349, 388
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
SsiI	CCGC	2 cut(s)	15, 874
SspMI	CTAG	2 cut(s)	171, 363
StyD4I	CCNGG	2 cut(s)	373, 655
StyI	CCWWGG	3 cut(s)	202, 458, 686
TaaI	ACNGT	1 cut(s)	808
TaqI	TCGA	3 cut(s)	142, 219, 310
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	11, 589, 849
Tru1I	TTAA	4 cut(s)	434, 525, 750, 801
Tru9I	TTAA	4 cut(s)	434, 525, 750, 801
TscAI	CASTG	1 cut(s)	813
TseFI	GTSAC	1 cut(s)	817
TseI	GCWGC	4 cut(s)	24, 228, 273, 837
Tsp45I	GTSAC	1 cut(s)	817
TspDTI	ATGAA	4 cut(s)	420, 461, 581, 714
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	813
Vha464I	CTTAAG	1 cut(s)	749
XapI	RAATTY	4 cut(s)	266, 312, 341, 663
XceI	RCATGY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XmnI	GAANNNNTTC	2 cut(s)	182, 382
XspI	CTAG	2 cut(s)	171, 363
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.