Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006890

Physical Location & Seq

Genomic Coordinates Reverse (-)

5036673 .. 5039336

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG061600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTGCCTCAGAGAATGAGAAAGAGAAGAAGATCGAACAACATGATCATCATCAAGATGAGCAGCAGCACAGAAATAAAAAACGCAAGCAAGTTTTCCCTTACGGCAACTACAGAGCCTACTACGGCTATCGTCTTGGTCAAGACACAGAGGAAGATCCTAGATTGAAGGTTTTCAAGAAGGAATGGTTTGAAGGCAAGGACTGTCTTGACATTGGCTGCAATGCTGGGATCATCACTATACAAATCGCCAAAAAGTTTTGCTGCCGGAGCATCCTTGGAGTTGACATTGATCCTGATCGAGTTCAGGATGCATACTGGCACCTCCAAAAACTTATGAGAATGAAGAAAGCTAAAAAGATACCAGGAAATGCTTCCAAGTTGAAGGTTGGTGAGAGTGCAAATGGGTCAGATTGCAGCATTGAAGGTTCATCAAATGAAGAGACAAAGGATAGCCCAAGGAATTGCTCTTCGGAAGAGACAGATCTATTTGACATAGTCTCTTTCCGGAATGAAGATTTTGTTAATAGTCGAGATCCCCCGAATAAGCATTATGACACCATTCTATGGATTACCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016073 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0034660 GO:0040031 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bin3 Methyltransf_18 Methyltransf_4 PrmA

Protein Analysis

193

Amino Acids

22.42

Weight (kDa)

7.0

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51130 AT5G51130
fragaria_vesca	FvH4_1g05710 FvH4_1g05710
malus_domestica	MD02G1058100.v1.1 MD02G1058200.v1.1 MD15G1192600.v1.1
prunus_persica	Prupe.7G224700_v2.0.a1
pyrus_communis	pycom02g04720 pycom15g17230
rosa_chinensis	RchiOBHm_Chr2g0091361
rosa_laevigata	RLG00000016215
rosa_multiflora	Rmu_sc0002270.1_g000052
rosa_roxburghii	Rroxscaffold_1G00004170 Rroxscaffold_2G00126060 Rroxscaffold_2G00150180 Rroxscaffold_2G00152470
rosa_rugosa	Rorug02G0016900
rosa_samantha	Rh2AG061600 Rh2BG061000 Rh2CG063100 Rh2CG415600 Rh2DG061600 Rh5AG127900 Rh7BG272900
rosa_wichuraiana	Rw2G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	567
AccIII	TCCGGA	1 cut(s)	507
AclWI	GGATC	4 cut(s)	152, 239, 287, 530
AfiI	CCNNNNNNNGG	1 cut(s)	567
AgsI	TTSAA	5 cut(s)	169, 178, 194, 385, 425
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw26I	GTCTC	3 cut(s)	437, 473, 505
AlwI	GGATC	4 cut(s)	152, 239, 287, 530
Aor13HI	TCCGGA	1 cut(s)	507
ApeKI	GCWGC	6 cut(s)	5, 64, 67, 219, 264, 417
Asp700I	GAANNNNTTC	2 cut(s)	173, 373
AsuHPI	GGTGA	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	321
BbvI	GCAGC	5 cut(s)	76, 79, 206, 251, 429
BceAI	ACGGC	2 cut(s)	121, 142
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	437, 473, 505
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	112
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	6 cut(s)	6, 65, 68, 220, 265, 418
BlsI	GCNGC	6 cut(s)	7, 66, 69, 221, 266, 419
Bme1390I	CCNGG	1 cut(s)	366
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	282, 301
BsaBI	GATNNNNATC	2 cut(s)	51, 297
BsaJI	CCNNGG	2 cut(s)	277, 458
BsaWI	WCCGGW	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	229
Bse8I	GATNNNNATC	2 cut(s)	51, 297
BseAI	TCCGGA	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	277, 458
BseGI	GGATG	2 cut(s)	273, 316
BseJI	GATNNNNATC	2 cut(s)	51, 297
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	323
BseXI	GCAGC	5 cut(s)	76, 79, 206, 251, 429
BseYI	CCCAGC	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	268, 508
BslI	CCNNNNNNNGG	1 cut(s)	567
BsmAI	GTCTC	3 cut(s)	437, 473, 505
Bsp13I	TCCGGA	1 cut(s)	507
Bsp143I	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
BspCNI	CTCAG	1 cut(s)	23
BspEI	TCCGGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	4 cut(s)	152, 239, 287, 530
BspQI	GCTCTTC	1 cut(s)	475
BspT107I	GGYRCC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	277, 458
BssMI	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
BssT1I	CCWWGG	2 cut(s)	277, 458
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	3 cut(s)	435, 471, 475
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	273, 316
BstKTI	GATC	8 cut(s)	36, 49, 160, 234, 295, 301, 487, 538
BstMAI	GTCTC	3 cut(s)	437, 473, 505
BstMBI	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	5 cut(s)	76, 79, 206, 251, 429
BstX2I	RGATCY	3 cut(s)	157, 484, 535
BstYI	RGATCY	3 cut(s)	157, 484, 535
BtsCI	GGATG	2 cut(s)	273, 316
Cac8I	GCNNGC	1 cut(s)	89
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	6 cut(s)	5, 119, 129, 219, 353, 456
CviKI_1	RGCY	6 cut(s)	5, 119, 129, 219, 353, 456
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	8 cut(s)	35, 48, 159, 233, 294, 300, 486, 537
DpnII	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
Eam1104I	CTCTTC	3 cut(s)	435, 471, 475
EarI	CTCTTC	3 cut(s)	435, 471, 475
Eco130I	CCWWGG	2 cut(s)	277, 458
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	277, 458
EcoT22I	ATGCAT	1 cut(s)	316
ErhI	CCWWGG	2 cut(s)	277, 458
FaeI	CATG	1 cut(s)	47
FaiI	YATR	7 cut(s)	45, 242, 316, 338, 497, 555, 568
FatI	CATG	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	6 cut(s)	6, 65, 68, 220, 265, 418
FokI	GGATG	2 cut(s)	260, 323
Fsp4HI	GCNGC	6 cut(s)	6, 65, 68, 220, 265, 418
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	6 cut(s)	6, 65, 68, 220, 265, 418
GsaI	CCCAGC	1 cut(s)	231
HapII	CCGG	2 cut(s)	268, 508
Hin1II	CATG	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HpaII	CCGG	2 cut(s)	268, 508
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	13, 412, 475
Hpy188III	TCNNGA	8 cut(s)	56, 143, 178, 209, 296, 308, 508, 533
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	5 cut(s)	163, 175, 188, 379, 419
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	4 cut(s)	222, 314, 401, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	507
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
LguI	GCTCTTC	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	8 cut(s)	213, 281, 293, 304, 309, 351, 378, 521
Lsp1109I	GCAGC	5 cut(s)	76, 79, 206, 251, 429
LweI	GCATC	2 cut(s)	282, 301
MaeI	CTAG	1 cut(s)	162
MalI	GATC	8 cut(s)	35, 48, 159, 233, 294, 300, 486, 537
MboI	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
MboII	GAAGA	8 cut(s)	40, 43, 167, 358, 452, 462, 488, 527
MflI	RGATCY	3 cut(s)	157, 484, 535
MluCI	AATT	1 cut(s)	463
MnlI	CCTC	3 cut(s)	19, 145, 335
Mph1103I	ATGCAT	1 cut(s)	316
MroI	TCCGGA	1 cut(s)	507
MroXI	GAANNNNTTC	2 cut(s)	173, 373
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	2 cut(s)	268, 508
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	270
NdeII	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	475
PdmI	GAANNNNTTC	2 cut(s)	173, 373
PflFI	GACNNNGTC	1 cut(s)	497
PflMI	CCANNNNNTGG	1 cut(s)	567
PkrI	GCNGC	6 cut(s)	7, 66, 69, 221, 266, 419
Psp6I	CCWGG	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	323
PsuI	RGATCY	3 cut(s)	157, 484, 535
PsyI	GACNNNGTC	1 cut(s)	497
RseI	CAYNNNNRTG	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	475
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	6 cut(s)	6, 65, 68, 220, 265, 418
Sau3AI	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
ScrFI	CCNGG	1 cut(s)	366
SetI	ASST	5 cut(s)	174, 327, 355, 390, 430
SfaNI	GCATC	2 cut(s)	282, 301
SfcI	CTRYAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	463
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	2 cut(s)	277, 458
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	3 cut(s)	36, 301, 532
TasI	AATT	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TseI	GCWGC	6 cut(s)	5, 64, 67, 219, 264, 417
TspDTI	ATGAA	4 cut(s)	359, 420, 453, 528
Tth111I	GACNNNGTC	1 cut(s)	497
Van91I	CCANNNNNTGG	1 cut(s)	567
XmnI	GAANNNNTTC	2 cut(s)	173, 373
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.