Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006890

Physical Location & Seq

Genomic Coordinates Reverse (-)

3014435 .. 3018108

Gene Structure 3674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g05710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGCGTCCTCCAAAGAAATTCCAGAAGAGCGACCGAGCCATGAACACGGAAGAGAAGAAAGAGAAGAAGAGCGAACAACCTGATCATCAAGATGAGCAGAAACAGCAGCAGAAAAATAAGAAACGCAAGCAGGTTTTCCCCTACGGCAACTACAGAGCCTACTACGGCTATCGTCTTGGTCAAGATACGGAGGAAGATCCTAGATTGAAGGTTTTCAAGAAGGAGTGGTTTCAAGGCAAGGACTGTCTCGACATTGGCTGCAATGCTGGGATCATGACTATTGAAATCGCCAAAAAGTTTTGCTGCAGGAGCATTCTCGGAGTTGACATTGATCCTGATCGAGTTAGGGATGCATACTGGCACCTCAATAAACTAATGAGAATGAAGAAAGCTAAAACGACACCAGGAAATGCTTCCAAGATGGAGGTTGGTGAGAGTGCAAATGGGTCAGATTGCAACATTGAAGGTTCACCAAATGAAGAGACAAAGGATAGCCCAAAAAATTCCTCTACAGAAGAGACAAAGCTATGTGACATAGTCTCTTTCCGAAATGAAGATTTTGTTAATAGTCAAGATCCACCAAATAAGCAGTATGACACCATTCTATGTTTGAGTGTGACAAAATGGATTCATCTGAATTGGGGTGATGATGGCTTGCTTACACTATTTTCTAAGATATGGAGACTACTTCGTCCGGGTGGCATTCTTGTGCTGGAACCTCAACCCTGGAAGTCTTATGATAAAAATCACAAAGTCTCTGAGACAGCAAGAGCCAATTATCAAAATCTTATATTCCATCCACAGCTGTTTCAGGATATACTTCTGGATAATAACAGTGGAAGACATCACTTCTGTATCGGGCAGCAAATCTGGATTCGACAGACCAATTTTAGTGTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016073 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0034660 GO:0040031 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bin3 Methyltransf_18 Methyltransf_4 PrmA

Protein Analysis

302

Amino Acids

35.01

Weight (kDa)

8.85

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	77 - 242	2.2e-11	Methyltransferase domain
Bin3	PF06859	199 - 278	9.6e-34	Bicoid-interacting protein 3 (Bin3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51130 AT5G51130
fragaria_vesca	FvH4_1g05710 FvH4_1g05710
malus_domestica	MD02G1058100.v1.1 MD02G1058200.v1.1 MD15G1192600.v1.1
prunus_persica	Prupe.7G224700_v2.0.a1
pyrus_communis	pycom02g04720 pycom15g17230
rosa_chinensis	RchiOBHm_Chr2g0091361
rosa_laevigata	RLG00000016215
rosa_multiflora	Rmu_sc0002270.1_g000052
rosa_roxburghii	Rroxscaffold_1G00004170 Rroxscaffold_2G00126060 Rroxscaffold_2G00150180 Rroxscaffold_2G00152470
rosa_rugosa	Rorug02G0016900
rosa_samantha	Rh2AG061600 Rh2BG061000 Rh2CG063100 Rh2CG415600 Rh2DG061600 Rh5AG127900 Rh7BG272900
rosa_wichuraiana	Rw2G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	693
Acc36I	ACCTGC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	363
AccII	CGCG	1 cut(s)	7
AclWI	GGATC	4 cut(s)	194, 281, 329, 572
AcsI	RAATTY	2 cut(s)	20, 505
AgsI	TTSAA	5 cut(s)	211, 220, 236, 287, 467
AjnI	CCWGG	2 cut(s)	406, 728
AluBI	AGCT	3 cut(s)	395, 529, 808
AluI	AGCT	3 cut(s)	395, 529, 808
Alw26I	GTCTC	7 cut(s)	254, 479, 515, 547, 679, 758, 763
AlwI	GGATC	4 cut(s)	194, 281, 329, 572
ApeKI	GCWGC	4 cut(s)	109, 261, 306, 865
ApoI	RAATTY	2 cut(s)	20, 505
Asp700I	GAANNNNTTC	2 cut(s)	215, 415
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	699
AsuHPI	GGTGA	3 cut(s)	446, 465, 659
BaeI	ACNNNNGTAYC	2 cut(s)	841, 874
BanI	GGYRCC	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	850
BbvI	GCAGC	4 cut(s)	121, 248, 293, 877
BccI	CCATC	3 cut(s)	418, 647, 807
BceAI	ACGGC	2 cut(s)	163, 184
BciT130I	CCWGG	2 cut(s)	408, 730
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	699
BcoDI	GTCTC	7 cut(s)	254, 479, 515, 547, 679, 758, 763
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	3 cut(s)	154, 307, 513
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	4 cut(s)	110, 262, 307, 866
BlsI	GCNGC	4 cut(s)	111, 263, 308, 867
Bme1390I	CCNGG	3 cut(s)	408, 699, 730
BmiI	GGNNCC	2 cut(s)	365, 720
BmrFI	CCNGG	3 cut(s)	408, 699, 730
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	850
BpuMI	CCSGG	1 cut(s)	699
BsaBI	GATNNNNATC	2 cut(s)	339, 747
BsaJI	CCNNGG	1 cut(s)	728
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	271
Bse8I	GATNNNNATC	2 cut(s)	339, 747
BseBI	CCWGG	2 cut(s)	408, 730
BseDI	CCNNGG	1 cut(s)	728
BseGI	GGATG	2 cut(s)	358, 799
BseJI	GATNNNNATC	2 cut(s)	339, 747
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	1 cut(s)	365
BseXI	GCAGC	4 cut(s)	121, 248, 293, 877
BseYI	CCCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	698
BsmAI	GTCTC	7 cut(s)	254, 479, 515, 547, 679, 758, 763
BsmI	GAATGC	2 cut(s)	315, 705
Bsp143I	GATC	6 cut(s)	85, 199, 273, 334, 340, 577
BspCNI	CTCAG	1 cut(s)	754
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	365, 720
BspMAI	CTGCAG	1 cut(s)	311
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	4 cut(s)	194, 281, 329, 572
BspQI	GCTCTTC	2 cut(s)	23, 65
BspT107I	GGYRCC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	728
BssMI	GATC	6 cut(s)	85, 199, 273, 334, 340, 577
Bst2UI	CCWGG	2 cut(s)	408, 730
Bst4CI	ACNGT	2 cut(s)	248, 839
Bst6I	CTCTTC	5 cut(s)	23, 48, 65, 477, 513
BstC8I	GCNNGC	2 cut(s)	131, 659
BstDEI	CTNAG	2 cut(s)	675, 762
BstF5I	GGATG	2 cut(s)	358, 799
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	6 cut(s)	88, 202, 276, 337, 343, 580
BstMAI	GTCTC	7 cut(s)	254, 479, 515, 547, 679, 758, 763
BstMBI	GATC	6 cut(s)	85, 199, 273, 334, 340, 577
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 312
BstNI	CCWGG	2 cut(s)	408, 730
BstSCI	CCNGG	3 cut(s)	406, 697, 728
BstSFI	CTRYAG	3 cut(s)	154, 307, 513
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	4 cut(s)	121, 248, 293, 877
BstV2I	GAAGAC	1 cut(s)	850
BstX2I	RGATCY	2 cut(s)	199, 577
BstYI	RGATCY	2 cut(s)	199, 577
BtsCI	GGATG	2 cut(s)	358, 799
BtsIMutI	CAGTG	1 cut(s)	844
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	131, 659
CciI	TCATGA	1 cut(s)	276
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	2 cut(s)	43, 277
DdeI	CTNAG	2 cut(s)	675, 762
DpnI	GATC	6 cut(s)	87, 201, 275, 336, 342, 579
DpnII	GATC	6 cut(s)	85, 199, 273, 334, 340, 577
DrdI	GACNNNNNNGTC	1 cut(s)	693
DseDI	GACNNNNNNGTC	1 cut(s)	693
Eam1104I	CTCTTC	5 cut(s)	23, 48, 65, 477, 513
EarI	CTCTTC	5 cut(s)	23, 48, 65, 477, 513
EcoRII	CCWGG	2 cut(s)	406, 728
EcoT22I	ATGCAT	1 cut(s)	358
FaeI	CATG	2 cut(s)	46, 280
FatI	CATG	2 cut(s)	42, 276
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	4 cut(s)	110, 262, 307, 866
FokI	GGATG	2 cut(s)	365, 786
Fsp4HI	GCNGC	4 cut(s)	110, 262, 307, 866
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	110, 262, 307, 866
GsaI	CCCAGC	1 cut(s)	273
HapII	CCGG	1 cut(s)	698
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	46, 280
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	631, 877
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	3 cut(s)	446, 465, 659
Hpy166II	GTNNAC	2 cut(s)	328, 473
Hpy188I	TCNGA	5 cut(s)	323, 454, 551, 639, 763
Hpy8I	GTNNAC	2 cut(s)	328, 473
HpyAV	CCTTC	3 cut(s)	205, 217, 461
HpyCH4III	ACNGT	2 cut(s)	248, 839
HpyCH4V	TGCA	5 cut(s)	264, 309, 356, 443, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 312
HpyF3I	CTNAG	2 cut(s)	675, 762
Hsp92II	CATG	2 cut(s)	46, 280
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	6 cut(s)	85, 199, 273, 334, 340, 577
LguI	GCTCTTC	2 cut(s)	23, 65
LmnI	GCTCC	1 cut(s)	312
Lsp1109I	GCAGC	4 cut(s)	121, 248, 293, 877
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	533, 619
MalI	GATC	6 cut(s)	87, 201, 275, 336, 342, 579
MboI	GATC	6 cut(s)	85, 199, 273, 334, 340, 577
MflI	RGATCY	2 cut(s)	199, 577
MluCI	AATT	5 cut(s)	20, 505, 640, 778, 889
MnlI	CCTC	6 cut(s)	21, 187, 377, 421, 520, 732
Mph1103I	ATGCAT	1 cut(s)	358
MroXI	GAANNNNTTC	2 cut(s)	215, 415
MseI	TTAA	1 cut(s)	567
MslI	CAYNNNNRTG	2 cut(s)	93, 710
MspA1I	CMGCKG	1 cut(s)	808
MspI	CCGG	1 cut(s)	698
MspR9I	CCNGG	3 cut(s)	408, 699, 730
Mva1269I	GAATGC	2 cut(s)	315, 705
MvaI	CCWGG	2 cut(s)	408, 730
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	106, 312
NciI	CCSGG	1 cut(s)	699
NdeII	GATC	6 cut(s)	85, 199, 273, 334, 340, 577
NlaIII	CATG	2 cut(s)	46, 280
NlaIV	GGNNCC	2 cut(s)	365, 720
NmuCI	GTSAC	2 cut(s)	533, 619
NsiI	ATGCAT	1 cut(s)	358
PagI	TCATGA	1 cut(s)	276
PciSI	GCTCTTC	2 cut(s)	23, 65
PctI	GAATGC	2 cut(s)	315, 705
PdmI	GAANNNNTTC	2 cut(s)	215, 415
PfeI	GAWTC	2 cut(s)	631, 877
PflFI	GACNNNGTC	1 cut(s)	539
PkrI	GCNGC	4 cut(s)	111, 263, 308, 867
Psp6I	CCWGG	2 cut(s)	406, 728
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	406, 728
PspN4I	GGNNCC	2 cut(s)	365, 720
PstI	CTGCAG	1 cut(s)	311
PsuI	RGATCY	2 cut(s)	199, 577
PsyI	GACNNNGTC	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	808
RseI	CAYNNNNRTG	2 cut(s)	93, 710
SapI	GCTCTTC	2 cut(s)	23, 65
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	4 cut(s)	110, 262, 307, 866
Sau3AI	GATC	6 cut(s)	85, 199, 273, 334, 340, 577
ScrFI	CCNGG	3 cut(s)	408, 699, 730
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	3 cut(s)	154, 307, 513
SmiMI	CAYNNNNRTG	2 cut(s)	93, 710
Sse9I	AATT	5 cut(s)	20, 505, 640, 778, 889
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	3 cut(s)	406, 697, 728
TaaI	ACNGT	2 cut(s)	248, 839
TaqI	TCGA	3 cut(s)	252, 343, 880
TaqII	GACCGA	1 cut(s)	51
TasI	AATT	5 cut(s)	20, 505, 640, 778, 889
TfiI	GAWTC	2 cut(s)	631, 877
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	1 cut(s)	844
TseFI	GTSAC	2 cut(s)	533, 619
TseI	GCWGC	4 cut(s)	109, 261, 306, 865
Tsp45I	GTSAC	2 cut(s)	533, 619
TspDTI	ATGAA	5 cut(s)	59, 401, 495, 570, 623
TspGWI	ACGGA	2 cut(s)	65, 206
TspRI	CASTG	1 cut(s)	844
Tth111I	GACNNNGTC	1 cut(s)	539
XapI	RAATTY	2 cut(s)	20, 505
XmnI	GAANNNNTTC	2 cut(s)	215, 415
XspI	CTAG	1 cut(s)	204
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.