Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006890

Physical Location & Seq

Genomic Coordinates Reverse (-)

15194094 .. 15197855

Gene Structure 3762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1192600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTCCAGCTCACGGAAAGGGAAGGAGGGCGCAGAGGAAGGCGAACAGCAACATGGGCAGATCAGTAATAAGAAACGCAAAGAGATTTTCCCCTACGGAAACTACAAAAGTTACTACGGCTATCGGATTGGCCAAGAAATGGAGGAAGATGCTAGGTTGAAGGTTTTCAAGAAGGAATGGTTCGAAGGAAAGGATTGTCTTGACATTGGCTGCAATTCTGGAATCATGACCATTCAAATTGCCAAAAAGTTTTGCTGCCAGAGCATTCTTGGTGTTGACATCGACGCCAATCGAATTCAGGATGCATACTGGCACGCCAGAAAATTTTTGAGAATGGAGAATGCTAGAAAGACACTCGGAAAGGCTTCTAAATTGGAGGGTGCAAGTGGCTTTTCTGAGGAGAAAGATCTGCTTGACACAGTATCTTTCCGAAAAGAAGATTTTGTTAACAGTCGGGATCCACACAAGAATCATTATGATACCATTATATGTTTGAGCGTGTCAAAATGGATTCATCTGAATTGGGGTGACGATGGATTGATTACATTATTTACAAGGGTTTGGAGTCTACTTCGCCGGGGTGGAATTTTTGTGTTGGAACCTCAACCTTGGAAGTCCTACGAAAAGAATTATAGAGTTTCTGAGACAACTAGAGAAAATTATAGAAATCTTATGTTCTATCCGAAAGATTTTCAAGACTTACTTCTGGATAAGATAGGATTCAGAAAAGTGGAGGACATCACTTCAAGCGTGTCGGGCAGCAAAACCGGATTCAACAGACCAATTTTAGTGTTCCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016073 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0034660 GO:0040031 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bin3 Methyltransf_18 Methyltransf_4 PrmA

Protein Analysis

268

Amino Acids

31.12

Weight (kDa)

9.1

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	53 - 244	4e-09	Methyltransferase domain
Methyltransf_12	PF08242	67 - 197	2.3e-08	Methyltransferase domain
Bin3	PF06859	159 - 267	2.9e-42	Bicoid-interacting protein 3 (Bin3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51130 AT5G51130
fragaria_vesca	FvH4_1g05710 FvH4_1g05710
malus_domestica	MD02G1058100.v1.1 MD02G1058200.v1.1 MD15G1192600.v1.1
prunus_persica	Prupe.7G224700_v2.0.a1
pyrus_communis	pycom02g04720 pycom15g17230
rosa_chinensis	RchiOBHm_Chr2g0091361
rosa_laevigata	RLG00000016215
rosa_multiflora	Rmu_sc0002270.1_g000052
rosa_roxburghii	Rroxscaffold_1G00004170 Rroxscaffold_2G00126060 Rroxscaffold_2G00150180 Rroxscaffold_2G00152470
rosa_rugosa	Rorug02G0016900
rosa_samantha	Rh2AG061600 Rh2BG061000 Rh2CG063100 Rh2CG415600 Rh2DG061600 Rh5AG127900 Rh7BG272900
rosa_wichuraiana	Rw2G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	568
AclWI	GGATC	2 cut(s)	452, 465
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	3 cut(s)	294, 323, 585
AcyI	GRCGYC	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	12, 139
AgsI	TTSAA	6 cut(s)	160, 169, 236, 695, 747, 775
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	638
AlwI	GGATC	2 cut(s)	452, 465
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	3 cut(s)	210, 255, 759
ApoI	RAATTY	3 cut(s)	294, 323, 585
Asp700I	GAANNNNTTC	2 cut(s)	164, 364
AspLEI	GCGC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	1 cut(s)	539
AsuII	TTCGAA	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	457
BbvI	GCAGC	3 cut(s)	197, 242, 771
BccI	CCATC	1 cut(s)	527
BceAI	ACGGC	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	1 cut(s)	638
BfaI	CTAG	3 cut(s)	153, 345, 651
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	3 cut(s)	211, 256, 760
BlsI	GCNGC	3 cut(s)	212, 257, 761
Bme1390I	CCNGG	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	459, 600
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	2 cut(s)	139, 292
Bpu14I	TTCGAA	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	578
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	577, 608
BsaWI	WCCGGW	1 cut(s)	767
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 139
Bse1I	ACTGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	577, 608
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	12, 139
BseMII	CTCAG	2 cut(s)	387, 633
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	197, 242, 771
BshFI	GGCC	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	577, 768
BslI	CCNNNNNNNGG	2 cut(s)	12, 139
BsmAI	GTCTC	1 cut(s)	638
BsmI	GAATGC	2 cut(s)	264, 346
BsnI	GGCC	1 cut(s)	132
Bsp119I	TTCGAA	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	60, 406, 457
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	388, 634
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	459, 600
BspPI	GGATC	2 cut(s)	452, 465
BspT104I	TTCGAA	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	577, 608
BssMI	GATC	3 cut(s)	60, 406, 457
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	608
Bst4CI	ACNGT	2 cut(s)	421, 452
BstACI	GRCGYC	1 cut(s)	285
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	396, 642
BstF5I	GGATG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	3 cut(s)	63, 409, 460
BstMAI	GTCTC	1 cut(s)	638
BstMBI	GATC	3 cut(s)	60, 406, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 261, 756
BstSCI	CCNGG	1 cut(s)	576
BstV1I	GCAGC	3 cut(s)	197, 242, 771
BstX2I	RGATCY	2 cut(s)	406, 457
BstYI	RGATCY	2 cut(s)	406, 457
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	315
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	1 cut(s)	32
CseI	GACGC	1 cut(s)	293
CviAII	CATG	2 cut(s)	53, 226
CviJI	RGCY	6 cut(s)	9, 120, 132, 210, 365, 390
CviKI_1	RGCY	6 cut(s)	9, 120, 132, 210, 365, 390
DdeI	CTNAG	2 cut(s)	396, 642
DpnI	GATC	3 cut(s)	62, 408, 459
DpnII	GATC	3 cut(s)	60, 406, 457
EaeI	YGGCCR	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	608
EcoRI	GAATTC	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	608
EcoT22I	ATGCAT	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	608
FaeI	CATG	2 cut(s)	56, 229
FaiI	YATR	9 cut(s)	54, 227, 307, 477, 488, 490, 633, 663, 674
FalI	AAGNNNNNCTT	4 cut(s)	396, 428, 687, 719
FatI	CATG	2 cut(s)	52, 225
FblI	GTMKAC	1 cut(s)	568
Fnu4HI	GCNGC	3 cut(s)	211, 256, 760
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	211, 256, 760
FspBI	CTAG	3 cut(s)	153, 345, 651
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	3 cut(s)	211, 256, 760
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	2 cut(s)	577, 768
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	56, 229
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	2 cut(s)	277, 448
HindII	GTYRAC	2 cut(s)	277, 448
HinfI	GANTC	6 cut(s)	222, 469, 511, 565, 720, 771
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	2 cut(s)	577, 768
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	3 cut(s)	277, 448, 569
Hpy188I	TCNGA	8 cut(s)	126, 359, 397, 431, 519, 643, 684, 725
Hpy188III	TCNNGA	8 cut(s)	169, 200, 219, 226, 299, 455, 695, 707
Hpy8I	GTNNAC	3 cut(s)	277, 448, 569
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	5 cut(s)	16, 32, 154, 166, 179
HpyCH4III	ACNGT	2 cut(s)	421, 452
HpyCH4V	TGCA	3 cut(s)	213, 305, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 261, 756
HpyF3I	CTNAG	2 cut(s)	396, 642
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	56, 229
HspAI	GCGC	1 cut(s)	30
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	60, 406, 457
LpnPI	CCDG	9 cut(s)	19, 204, 272, 284, 295, 331, 590, 692, 781
Lsp1109I	GCAGC	3 cut(s)	197, 242, 771
LweI	GCATC	2 cut(s)	139, 292
MaeI	CTAG	3 cut(s)	153, 345, 651
MaeIII	GTNAC	2 cut(s)	110, 527
MalI	GATC	3 cut(s)	62, 408, 459
MboI	GATC	3 cut(s)	60, 406, 457
MboII	GAAGA	2 cut(s)	158, 449
MflI	RGATCY	2 cut(s)	406, 457
MlsI	TGGCCA	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	574
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	7 cut(s)	19, 28, 136, 370, 391, 612, 727
Mox20I	TGGCCA	1 cut(s)	132
Mph1103I	ATGCAT	1 cut(s)	307
MroXI	GAANNNNTTC	2 cut(s)	164, 364
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	2 cut(s)	577, 768
MspR9I	CCNGG	1 cut(s)	578
Mva1269I	GAATGC	2 cut(s)	264, 346
MwoI	GCNNNNNNNGC	3 cut(s)	55, 261, 756
NciI	CCSGG	1 cut(s)	578
NdeII	GATC	3 cut(s)	60, 406, 457
NlaIII	CATG	2 cut(s)	56, 229
NlaIV	GGNNCC	2 cut(s)	459, 600
NmuCI	GTSAC	1 cut(s)	527
NsiI	ATGCAT	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	183
PagI	TCATGA	1 cut(s)	225
PctI	GAATGC	2 cut(s)	264, 346
PdmI	GAANNNNTTC	2 cut(s)	164, 364
PfeI	GAWTC	5 cut(s)	222, 469, 511, 720, 771
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	212, 257, 761
PleI	GAGTC	1 cut(s)	573
PpsI	GAGTC	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	459, 600
PsuI	RGATCY	2 cut(s)	406, 457
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	3 cut(s)	211, 256, 760
Sau3AI	GATC	3 cut(s)	60, 406, 457
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	1 cut(s)	578
SetI	ASST	5 cut(s)	11, 158, 165, 604, 610
SfaNI	GCATC	2 cut(s)	139, 292
SfuI	TTCGAA	1 cut(s)	183
SspMI	CTAG	3 cut(s)	153, 345, 651
StyD4I	CCNGG	1 cut(s)	576
StyI	CCWWGG	1 cut(s)	608
TaaI	ACNGT	2 cut(s)	421, 452
TaqI	TCGA	3 cut(s)	183, 282, 292
TfiI	GAWTC	5 cut(s)	222, 469, 511, 720, 771
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	3 cut(s)	210, 255, 759
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	1 cut(s)	503
TspGWI	ACGGA	2 cut(s)	28, 111
Van91I	CCANNNNNTGG	1 cut(s)	139
XapI	RAATTY	3 cut(s)	294, 323, 585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	568
XmnI	GAANNNNTTC	2 cut(s)	164, 364
XspI	CTAG	3 cut(s)	153, 345, 651
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.