Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006890

Physical Location & Seq

Genomic Coordinates Forward (+)

87627605 .. 87631360

Gene Structure 3756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTGCCTCAGAGGATGAGAAAGAGAAGAAGATCGAACCACATGATCATCATCAAGATGAGCAGCAGCACAGAAATAAAAAACGCAAGCAAGTTTTCCCTTACGGCAACTACAGAGCCTACTACGGCTATCGTCTTGGTCAAGACACAGAGGAAGATCCTAGATTGAAGGTTTTCAAGAAGGAATGGTTTGAAGGCAAGGACTGTCTTGACATTGGCTGCAATGCTGGGATCATCACTATACAAATCGATCGAGTTCAGGATGCATACTGGCACCTCCAAAAACTTATGAGAATGAAGAAAGCTAAAAAGATACCAGGAAATGCTTCCAAGTTGAAGGTTGGTGAGAGTGCAAATGGGTCAGATTGCAGCATTGAAGGTTCATCAAATGAAGAGACAAAGGATAGCCCAAGGAATTGCTCTTCAGAAGAGACAGATCTATTTGACATAGTCTCTTTCCGGAATGAAGATTTTGTTAATAGTCGAGATCCCCCGAATAAGCATTATGACACCATTCTATGTTTGAGCGTGACAAAATGGATTCATCTGAATTGGGGTGATGATGGCTTGCTTACACTATTTTCAAAGATATGGAGACTACTTCGTCCGTCACATGCTGACCTTGGGAAAAAGTTGAGTAATTCTTTTCCTTCTGAGCAGGGTGGCATTCTTGTGCTGGAACCTCAACCCTGGAAGTCTTATGATAAGAATCATAAAGTTTCTGAGATTGGATTTAGAACAGTGGAAGACATCACTTCCAGCGTGTCAGGCAGCAAATCTGGATTCAACAGACCAATTTTAGTGTTCCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016073 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0034660 GO:0040031 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bin3 Methyltransf_18 Methyltransf_4 PrmA

Protein Analysis

271

Amino Acids

31.17

Weight (kDa)

7.66

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bin3	PF06859	169 - 242	6.1e-22	Bicoid-interacting protein 3 (Bin3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51130 AT5G51130
fragaria_vesca	FvH4_1g05710 FvH4_1g05710
malus_domestica	MD02G1058100.v1.1 MD02G1058200.v1.1 MD15G1192600.v1.1
prunus_persica	Prupe.7G224700_v2.0.a1
pyrus_communis	pycom02g04720 pycom15g17230
rosa_chinensis	RchiOBHm_Chr2g0091361
rosa_laevigata	RLG00000016215
rosa_multiflora	Rmu_sc0002270.1_g000052
rosa_roxburghii	Rroxscaffold_1G00004170 Rroxscaffold_2G00126060 Rroxscaffold_2G00150180 Rroxscaffold_2G00152470
rosa_rugosa	Rorug02G0016900
rosa_samantha	Rh2AG061600 Rh2BG061000 Rh2CG063100 Rh2CG415600 Rh2DG061600 Rh5AG127900 Rh7BG272900
rosa_wichuraiana	Rw2G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	273
AccIII	TCCGGA	1 cut(s)	459
AclWI	GGATC	3 cut(s)	152, 239, 482
AcuI	CTGAAG	1 cut(s)	408
AgsI	TTSAA	7 cut(s)	169, 178, 194, 337, 377, 585, 787
AjnI	CCWGG	2 cut(s)	316, 689
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw26I	GTCTC	4 cut(s)	389, 425, 457, 589
AlwI	GGATC	3 cut(s)	152, 239, 482
Aor13HI	TCCGGA	1 cut(s)	459
ApeKI	GCWGC	6 cut(s)	5, 64, 67, 219, 369, 771
Asp700I	GAANNNNTTC	2 cut(s)	173, 325
AsuHPI	GGTGA	2 cut(s)	356, 569
BanI	GGYRCC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	753
BbvI	GCAGC	5 cut(s)	76, 79, 206, 381, 783
BccI	CCATC	1 cut(s)	557
BceAI	ACGGC	2 cut(s)	121, 142
BciT130I	CCWGG	2 cut(s)	318, 691
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	4 cut(s)	389, 425, 457, 589
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	112
BglII	AGATCT	1 cut(s)	436
BisI	GCNGC	6 cut(s)	6, 65, 68, 220, 370, 772
BlsI	GCNGC	6 cut(s)	7, 66, 69, 221, 371, 773
Bme1390I	CCNGG	2 cut(s)	318, 691
BmiI	GGNNCC	2 cut(s)	275, 681
BmrFI	CCNGG	2 cut(s)	318, 691
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	753
Bsa29I	ATCGAT	1 cut(s)	249
BsaBI	GATNNNNATC	2 cut(s)	51, 708
BsaJI	CCNNGG	3 cut(s)	410, 622, 689
BsaWI	WCCGGW	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	229
Bse8I	GATNNNNATC	2 cut(s)	51, 708
BseAI	TCCGGA	1 cut(s)	459
BseBI	CCWGG	2 cut(s)	318, 691
BseCI	ATCGAT	1 cut(s)	249
BseDI	CCNNGG	3 cut(s)	410, 622, 689
BseGI	GGATG	2 cut(s)	22, 268
BseJI	GATNNNNATC	2 cut(s)	51, 708
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	3 cut(s)	24, 645, 714
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	5 cut(s)	76, 79, 206, 381, 783
BseYI	CCCAGC	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	253
BshNI	GGYRCC	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	460
BsmAI	GTCTC	4 cut(s)	389, 425, 457, 589
BsmI	GAATGC	1 cut(s)	666
Bsp13I	TCCGGA	1 cut(s)	459
Bsp143I	GATC	7 cut(s)	33, 46, 157, 231, 250, 436, 487
BspCNI	CTCAG	3 cut(s)	23, 646, 715
BspDI	ATCGAT	1 cut(s)	249
BspEI	TCCGGA	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	275, 681
BspPI	GGATC	3 cut(s)	152, 239, 482
BspQI	GCTCTTC	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	410, 622, 689
BssMI	GATC	7 cut(s)	33, 46, 157, 231, 250, 436, 487
BssT1I	CCWWGG	2 cut(s)	410, 622
Bst2UI	CCWGG	2 cut(s)	318, 691
Bst4CI	ACNGT	2 cut(s)	206, 742
Bst6I	CTCTTC	3 cut(s)	387, 423, 427
BstC8I	GCNNGC	2 cut(s)	89, 569
BstDEI	CTNAG	3 cut(s)	10, 654, 723
BstF5I	GGATG	2 cut(s)	22, 268
BstKTI	GATC	7 cut(s)	36, 49, 160, 234, 253, 439, 490
BstMAI	GTCTC	4 cut(s)	389, 425, 457, 589
BstMBI	GATC	7 cut(s)	33, 46, 157, 231, 250, 436, 487
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	768
BstNI	CCWGG	2 cut(s)	318, 691
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	2 cut(s)	316, 689
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	5 cut(s)	76, 79, 206, 381, 783
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	3 cut(s)	157, 436, 487
BstYI	RGATCY	3 cut(s)	157, 436, 487
Bsu15I	ATCGAT	1 cut(s)	249
BsuTUI	ATCGAT	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	22, 268
BtsIMutI	CAGTG	1 cut(s)	747
Cac8I	GCNNGC	2 cut(s)	89, 569
ClaI	ATCGAT	1 cut(s)	249
CviAII	CATG	2 cut(s)	44, 614
CviJI	RGCY	7 cut(s)	5, 119, 129, 219, 305, 408, 567
CviKI_1	RGCY	7 cut(s)	5, 119, 129, 219, 305, 408, 567
DdeI	CTNAG	3 cut(s)	10, 654, 723
DpnI	GATC	7 cut(s)	35, 48, 159, 233, 252, 438, 489
DpnII	GATC	7 cut(s)	33, 46, 157, 231, 250, 436, 487
DrdI	GACNNNNNNGTC	1 cut(s)	603
DseDI	GACNNNNNNGTC	1 cut(s)	603
Eam1104I	CTCTTC	3 cut(s)	387, 423, 427
EarI	CTCTTC	3 cut(s)	387, 423, 427
Eco130I	CCWWGG	2 cut(s)	410, 622
Eco57I	CTGAAG	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	316, 689
EcoT14I	CCWWGG	2 cut(s)	410, 622
EcoT22I	ATGCAT	1 cut(s)	268
ErhI	CCWWGG	2 cut(s)	410, 622
FaeI	CATG	2 cut(s)	47, 617
FatI	CATG	2 cut(s)	43, 613
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	6 cut(s)	6, 65, 68, 220, 370, 772
FokI	GGATG	2 cut(s)	29, 275
Fsp4HI	GCNGC	6 cut(s)	6, 65, 68, 220, 370, 772
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	6 cut(s)	6, 65, 68, 220, 370, 772
GsaI	CCCAGC	1 cut(s)	231
HapII	CCGG	1 cut(s)	460
Hin1II	CATG	2 cut(s)	47, 617
HinfI	GANTC	3 cut(s)	541, 709, 783
HpaII	CCGG	1 cut(s)	460
HphI	GGTGA	2 cut(s)	356, 569
Hpy188I	TCNGA	6 cut(s)	13, 364, 427, 549, 655, 724
Hpy188III	TCNNGA	8 cut(s)	56, 143, 178, 209, 260, 460, 485, 780
HpyAV	CCTTC	6 cut(s)	163, 175, 188, 331, 371, 660
HpyCH4III	ACNGT	2 cut(s)	206, 742
HpyCH4V	TGCA	4 cut(s)	222, 266, 353, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	768
HpyF3I	CTNAG	3 cut(s)	10, 654, 723
Hsp92II	CATG	2 cut(s)	47, 617
Kpn2I	TCCGGA	1 cut(s)	459
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	7 cut(s)	33, 46, 157, 231, 250, 436, 487
LguI	GCTCTTC	1 cut(s)	427
Lsp1109I	GCAGC	5 cut(s)	76, 79, 206, 381, 783
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	529, 609
MalI	GATC	7 cut(s)	35, 48, 159, 233, 252, 438, 489
MboI	GATC	7 cut(s)	33, 46, 157, 231, 250, 436, 487
MboII	GAAGA	9 cut(s)	40, 43, 167, 310, 404, 414, 440, 479, 758
MflI	RGATCY	3 cut(s)	157, 436, 487
MluCI	AATT	4 cut(s)	415, 550, 640, 795
MnlI	CCTC	5 cut(s)	7, 19, 145, 287, 693
Mph1103I	ATGCAT	1 cut(s)	268
MroI	TCCGGA	1 cut(s)	459
MroXI	GAANNNNTTC	2 cut(s)	173, 325
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	2 cut(s)	57, 671
MspI	CCGG	1 cut(s)	460
MspR9I	CCNGG	2 cut(s)	318, 691
Mva1269I	GAATGC	1 cut(s)	666
MvaI	CCWGG	2 cut(s)	318, 691
MwoI	GCNNNNNNNGC	1 cut(s)	768
NdeII	GATC	7 cut(s)	33, 46, 157, 231, 250, 436, 487
NlaIII	CATG	2 cut(s)	47, 617
NlaIV	GGNNCC	2 cut(s)	275, 681
NmuCI	GTSAC	2 cut(s)	529, 609
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	1 cut(s)	617
PciSI	GCTCTTC	1 cut(s)	427
PctI	GAATGC	1 cut(s)	666
PdmI	GAANNNNTTC	2 cut(s)	173, 325
PfeI	GAWTC	3 cut(s)	541, 709, 783
PflFI	GACNNNGTC	1 cut(s)	449
PkrI	GCNGC	6 cut(s)	7, 66, 69, 221, 371, 773
Ple19I	CGATCG	1 cut(s)	253
Psp6I	CCWGG	2 cut(s)	316, 689
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	2 cut(s)	316, 689
PspN4I	GGNNCC	2 cut(s)	275, 681
PsuI	RGATCY	3 cut(s)	157, 436, 487
PsyI	GACNNNGTC	1 cut(s)	449
PvuI	CGATCG	1 cut(s)	253
RseI	CAYNNNNRTG	2 cut(s)	57, 671
SapI	GCTCTTC	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	6 cut(s)	6, 65, 68, 220, 370, 772
Sau3AI	GATC	7 cut(s)	33, 46, 157, 231, 250, 436, 487
ScrFI	CCNGG	2 cut(s)	318, 691
SetI	ASST	7 cut(s)	174, 279, 307, 342, 382, 624, 685
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	2 cut(s)	57, 671
Sse9I	AATT	4 cut(s)	415, 550, 640, 795
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	316, 689
StyI	CCWWGG	2 cut(s)	410, 622
TaaI	ACNGT	2 cut(s)	206, 742
TaqI	TCGA	4 cut(s)	36, 249, 253, 484
TasI	AATT	4 cut(s)	415, 550, 640, 795
TfiI	GAWTC	3 cut(s)	541, 709, 783
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	1 cut(s)	747
TseFI	GTSAC	2 cut(s)	529, 609
TseI	GCWGC	6 cut(s)	5, 64, 67, 219, 369, 771
Tsp45I	GTSAC	2 cut(s)	529, 609
TspDTI	ATGAA	5 cut(s)	311, 372, 405, 480, 533
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	1 cut(s)	747
Tth111I	GACNNNGTC	1 cut(s)	449
XceI	RCATGY	1 cut(s)	617
XmnI	GAANNNNTTC	2 cut(s)	173, 325
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.