Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006890

Physical Location & Seq

Genomic Coordinates Reverse (-)

3063788 .. 3065384

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04720.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTGCTTGCCTACAGCCAAAAAGTTTTGCTGCCGGAGCATTCTCGGTGTTGACATCGACGCCAATCGAATTCAGGATGCGTACTGGCACGCCAGGAAATTTTTGAGAACGGAGAATGCTAGGAAGACTCCCGGTAAGGCTTCTAAATTGGAGGGTGTAAATGGCTCTTCCGAGGAGAAAGATCTGCTCGACACAGTATCTTTCCGAAAAGAAGATTTTGTTAACAGTCGGGATCCACACAAAAATCATTACGACACCATTACATGTTTGAGCGTGTCGAAATGGATTCATCTGAATTGGGGTGACGATGGATTGATTACGTTATTTACAAGGGTTTGGAGTCTACTTCGTCCGGGCGGAATTTTTGTGTTGGAACCTCAACCTTGGACGTCCTACGAAAAGAATTATAGAGTTTCTGAGACAACTAAAGAAAATTATAGGAATCTTATGGTCTACCCGAAAGATTTTCAAGACTTACTTCTGGATAAGATAGGATTCAGAAAAGTGGAGGACATCACTTCAAGCGTGTCGGGCAGCAAAACCGGATTCAACAGACCAATTTTAGTGTTCCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016073 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0034660 GO:0040031 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bin3 Methyltransf_18 Methyltransf_4 PrmA

Protein Analysis

193

Amino Acids

22.21

Weight (kDa)

9.13

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51130 AT5G51130
fragaria_vesca	FvH4_1g05710 FvH4_1g05710
malus_domestica	MD02G1058100.v1.1 MD02G1058200.v1.1 MD15G1192600.v1.1
prunus_persica	Prupe.7G224700_v2.0.a1
pyrus_communis	pycom02g04720 pycom15g17230
rosa_chinensis	RchiOBHm_Chr2g0091361
rosa_laevigata	RLG00000016215
rosa_multiflora	Rmu_sc0002270.1_g000052
rosa_roxburghii	Rroxscaffold_1G00004170 Rroxscaffold_2G00126060 Rroxscaffold_2G00150180 Rroxscaffold_2G00152470
rosa_rugosa	Rorug02G0016900
rosa_samantha	Rh2AG061600 Rh2BG061000 Rh2CG063100 Rh2CG415600 Rh2DG061600 Rh5AG127900 Rh7BG272900
rosa_wichuraiana	Rw2G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	392
AccI	GTMKAC	2 cut(s)	343, 453
AciI	CCGC	1 cut(s)	357
AclWI	GGATC	2 cut(s)	227, 240
AcsI	RAATTY	3 cut(s)	69, 98, 360
AcyI	GRCGYC	2 cut(s)	60, 389
AfaI	GTAC	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	3 cut(s)	470, 522, 550
AjnI	CCWGG	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	227, 240
ApeKI	GCWGC	2 cut(s)	30, 534
ApoI	RAATTY	3 cut(s)	69, 98, 360
AsuC2I	CCSGG	2 cut(s)	132, 354
AsuHPI	GGTGA	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	17, 546
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	2 cut(s)	132, 354
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	12
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	2 cut(s)	31, 535
BlsI	GCNGC	2 cut(s)	32, 536
Bme1390I	CCNGG	3 cut(s)	94, 132, 354
BmiI	GGNNCC	2 cut(s)	234, 375
BmrFI	CCNGG	3 cut(s)	94, 132, 354
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	131
BpuMI	CCSGG	2 cut(s)	132, 354
BsaHI	GRCGYC	2 cut(s)	60, 389
BsaJI	CCNNGG	2 cut(s)	171, 383
BsaWI	WCCGGW	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	171, 383
BseGI	GGATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	17, 546
BsiSI	CCGG	4 cut(s)	34, 132, 353, 543
BsmAI	GTCTC	1 cut(s)	413
BsmI	GAATGC	2 cut(s)	39, 121
Bsp143I	GATC	2 cut(s)	181, 232
BspACI	CCGC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	234, 375
BspPI	GGATC	2 cut(s)	227, 240
BspQI	GCTCTTC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	171, 383
BssMI	GATC	2 cut(s)	181, 232
BssNI	GRCGYC	2 cut(s)	60, 389
BssT1I	CCWWGG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	196, 227
Bst6I	CTCTTC	1 cut(s)	172
BstACI	GRCGYC	2 cut(s)	60, 389
BstC8I	GCNNGC	2 cut(s)	8, 90
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	184, 235
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	2 cut(s)	181, 232
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 531
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	267
BstSCI	CCNGG	3 cut(s)	92, 130, 352
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	17, 546
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	2 cut(s)	181, 232
BstYI	RGATCY	2 cut(s)	181, 232
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	2 cut(s)	8, 90
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	1 cut(s)	264
CviJI	RGCY	3 cut(s)	17, 140, 165
CviKI_1	RGCY	3 cut(s)	17, 140, 165
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	183, 234
DpnII	GATC	2 cut(s)	181, 232
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	1 cut(s)	267
FaiI	YATR	4 cut(s)	265, 408, 438, 449
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FatI	CATG	1 cut(s)	263
FblI	GTMKAC	2 cut(s)	343, 453
Fnu4HI	GCNGC	2 cut(s)	31, 535
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	31, 535
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	2 cut(s)	31, 535
HapII	CCGG	4 cut(s)	34, 132, 353, 543
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	2 cut(s)	60, 389
Hin1II	CATG	1 cut(s)	267
HincII	GTYRAC	2 cut(s)	52, 223
HindII	GTYRAC	2 cut(s)	52, 223
HinfI	GANTC	6 cut(s)	127, 286, 340, 442, 495, 546
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	4 cut(s)	34, 132, 353, 543
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	4 cut(s)	52, 223, 344, 454
Hpy188I	TCNGA	5 cut(s)	172, 206, 294, 418, 500
Hpy188III	TCNNGA	4 cut(s)	74, 230, 470, 482
Hpy8I	GTNNAC	4 cut(s)	52, 223, 344, 454
Hpy99I	CGWCG	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	196, 227
HpyCH4IV	ACGT	2 cut(s)	320, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 531
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	2 cut(s)	320, 389
Hsp92I	GRCGYC	2 cut(s)	60, 389
Hsp92II	CATG	1 cut(s)	267
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	181, 232
LguI	GCTCTTC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	9 cut(s)	47, 59, 70, 79, 106, 145, 366, 467, 556
Lsp1109I	GCAGC	2 cut(s)	17, 546
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	2 cut(s)	320, 389
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	2 cut(s)	183, 234
MboI	GATC	2 cut(s)	181, 232
MboII	GAAGA	3 cut(s)	136, 159, 224
MflI	RGATCY	2 cut(s)	181, 232
MluCI	AATT	8 cut(s)	69, 98, 146, 295, 360, 403, 433, 558
MlyI	GAGTC	2 cut(s)	121, 349
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	4 cut(s)	145, 166, 387, 502
MseI	TTAA	1 cut(s)	222
MspI	CCGG	4 cut(s)	34, 132, 353, 543
MspR9I	CCNGG	3 cut(s)	94, 132, 354
Mva1269I	GAATGC	2 cut(s)	39, 121
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	36, 531
NciI	CCSGG	2 cut(s)	132, 354
NdeII	GATC	2 cut(s)	181, 232
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	2 cut(s)	234, 375
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	267
PciI	ACATGT	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	172
PctI	GAATGC	2 cut(s)	39, 121
PfeI	GAWTC	4 cut(s)	286, 442, 495, 546
PkrI	GCNGC	2 cut(s)	32, 536
PleI	GAGTC	2 cut(s)	121, 348
PpsI	GAGTC	2 cut(s)	121, 348
PscI	ACATGT	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	234, 375
PsuI	RGATCY	2 cut(s)	181, 232
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	31, 535
Sau3AI	GATC	2 cut(s)	181, 232
SchI	GAGTC	2 cut(s)	121, 349
ScrFI	CCNGG	3 cut(s)	94, 132, 354
SetI	ASST	4 cut(s)	323, 379, 385, 392
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	12
Sse9I	AATT	8 cut(s)	69, 98, 146, 295, 360, 403, 433, 558
SsiI	CCGC	1 cut(s)	357
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	3 cut(s)	92, 130, 352
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	196, 227
TaiI	ACGT	2 cut(s)	323, 392
TaqI	TCGA	4 cut(s)	57, 67, 189, 278
TasI	AATT	8 cut(s)	69, 98, 146, 295, 360, 403, 433, 558
TfiI	GAWTC	4 cut(s)	286, 442, 495, 546
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	30, 534
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	125
XapI	RAATTY	3 cut(s)	69, 98, 360
XceI	RCATGY	1 cut(s)	267
XmiI	GTMKAC	2 cut(s)	343, 453
XspI	CTAG	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.