Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006890

Physical Location & Seq

Genomic Coordinates Reverse (-)

4514607 .. 4516651

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG061600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTGCCTCAGTGAATGAGAAAGAGAAGAAGATCGAACAACATGATCATCATCAAGATGAGCAGCAGCACAGAAATAAAAAACGCAAGCAAGTTTTCCCTTACGGCAACTACAGAGCCTACTACGGCTATCGTCTTGGTCAAGACACAGAGGAAGATCCTAGATTGAAGGTTTTCAAGAAGGAATGGTTTGAAGGCAAGGACTGTCTTGACATTGGCTGCAATGCTGGGATCATCACTATACAAATCGCCAAAAAGTTTTGCTGCCGGAGCATCCTTGGAGTTGACATTGATCCTGATCGAGTTCAGGATGCATACTGGCACCTCCAAAAACTTATGAGAATGAAGAAAGCTAAAAAGATACCAGGAAATGCTTCCAAGTTGAAGGTTGGTGAGAGTGCAAATGGGTCAGATTGCAGCATTGAAGGTTCATCAAATGAAGAGACAAAGGATAGCCCAAGGAATTGCTCTTCGGAAGAGACAGATCTATTTGACATAGTCTCTTTCCGGAATGAAGATTTTGTTAATAGTCGAGATCCCCCAAATAAGCATTATGACACCATTCTATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016073 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0034660 GO:0040031 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bin3 Methyltransf_18 Methyltransf_4 PrmA

Protein Analysis

190

Amino Acids

22.05

Weight (kDa)

7.0

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51130 AT5G51130
fragaria_vesca	FvH4_1g05710 FvH4_1g05710
malus_domestica	MD02G1058100.v1.1 MD02G1058200.v1.1 MD15G1192600.v1.1
prunus_persica	Prupe.7G224700_v2.0.a1
pyrus_communis	pycom02g04720 pycom15g17230
rosa_chinensis	RchiOBHm_Chr2g0091361
rosa_laevigata	RLG00000016215
rosa_multiflora	Rmu_sc0002270.1_g000052
rosa_roxburghii	Rroxscaffold_1G00004170 Rroxscaffold_2G00126060 Rroxscaffold_2G00150180 Rroxscaffold_2G00152470
rosa_rugosa	Rorug02G0016900
rosa_samantha	Rh2AG061600 Rh2BG061000 Rh2CG063100 Rh2CG415600 Rh2DG061600 Rh5AG127900 Rh7BG272900
rosa_wichuraiana	Rw2G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	567
AccIII	TCCGGA	1 cut(s)	507
AclWI	GGATC	4 cut(s)	152, 239, 287, 530
AfiI	CCNNNNNNNGG	1 cut(s)	567
AgsI	TTSAA	5 cut(s)	169, 178, 194, 385, 425
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw26I	GTCTC	3 cut(s)	437, 473, 505
AlwI	GGATC	4 cut(s)	152, 239, 287, 530
Aor13HI	TCCGGA	1 cut(s)	507
ApeKI	GCWGC	6 cut(s)	5, 64, 67, 219, 264, 417
Asp700I	GAANNNNTTC	2 cut(s)	173, 373
AsuHPI	GGTGA	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	321
BbvI	GCAGC	5 cut(s)	76, 79, 206, 251, 429
BceAI	ACGGC	2 cut(s)	121, 142
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	437, 473, 505
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	112
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	6 cut(s)	6, 65, 68, 220, 265, 418
BlsI	GCNGC	6 cut(s)	7, 66, 69, 221, 266, 419
Bme1390I	CCNGG	1 cut(s)	366
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	282, 301
BsaBI	GATNNNNATC	2 cut(s)	51, 297
BsaJI	CCNNGG	2 cut(s)	277, 458
BsaWI	WCCGGW	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	229
Bse8I	GATNNNNATC	2 cut(s)	51, 297
BseAI	TCCGGA	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	277, 458
BseGI	GGATG	2 cut(s)	273, 316
BseJI	GATNNNNATC	2 cut(s)	51, 297
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	323
BseXI	GCAGC	5 cut(s)	76, 79, 206, 251, 429
BseYI	CCCAGC	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	268, 508
BslI	CCNNNNNNNGG	1 cut(s)	567
BsmAI	GTCTC	3 cut(s)	437, 473, 505
Bsp13I	TCCGGA	1 cut(s)	507
Bsp143I	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
BspCNI	CTCAG	1 cut(s)	23
BspEI	TCCGGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	4 cut(s)	152, 239, 287, 530
BspQI	GCTCTTC	1 cut(s)	475
BspT107I	GGYRCC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	277, 458
BssMI	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
BssT1I	CCWWGG	2 cut(s)	277, 458
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	3 cut(s)	435, 471, 475
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	273, 316
BstKTI	GATC	8 cut(s)	36, 49, 160, 234, 295, 301, 487, 538
BstMAI	GTCTC	3 cut(s)	437, 473, 505
BstMBI	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	5 cut(s)	76, 79, 206, 251, 429
BstX2I	RGATCY	3 cut(s)	157, 484, 535
BstYI	RGATCY	3 cut(s)	157, 484, 535
BtsCI	GGATG	2 cut(s)	273, 316
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	89
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	6 cut(s)	5, 119, 129, 219, 353, 456
CviKI_1	RGCY	6 cut(s)	5, 119, 129, 219, 353, 456
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	8 cut(s)	35, 48, 159, 233, 294, 300, 486, 537
DpnII	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
Eam1104I	CTCTTC	3 cut(s)	435, 471, 475
EarI	CTCTTC	3 cut(s)	435, 471, 475
Eco130I	CCWWGG	2 cut(s)	277, 458
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	277, 458
EcoT22I	ATGCAT	1 cut(s)	316
ErhI	CCWWGG	2 cut(s)	277, 458
FaeI	CATG	1 cut(s)	47
FaiI	YATR	7 cut(s)	45, 242, 316, 338, 497, 555, 568
FatI	CATG	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	6 cut(s)	6, 65, 68, 220, 265, 418
FokI	GGATG	2 cut(s)	260, 323
Fsp4HI	GCNGC	6 cut(s)	6, 65, 68, 220, 265, 418
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	6 cut(s)	6, 65, 68, 220, 265, 418
GsaI	CCCAGC	1 cut(s)	231
HapII	CCGG	2 cut(s)	268, 508
Hin1II	CATG	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HpaII	CCGG	2 cut(s)	268, 508
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	412, 475
Hpy188III	TCNNGA	8 cut(s)	56, 143, 178, 209, 296, 308, 508, 533
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	5 cut(s)	163, 175, 188, 379, 419
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	4 cut(s)	222, 314, 401, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	507
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
LguI	GCTCTTC	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	8 cut(s)	213, 281, 293, 304, 309, 351, 378, 521
Lsp1109I	GCAGC	5 cut(s)	76, 79, 206, 251, 429
LweI	GCATC	2 cut(s)	282, 301
MaeI	CTAG	1 cut(s)	162
MalI	GATC	8 cut(s)	35, 48, 159, 233, 294, 300, 486, 537
MboI	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
MboII	GAAGA	8 cut(s)	40, 43, 167, 358, 452, 462, 488, 527
MflI	RGATCY	3 cut(s)	157, 484, 535
MluCI	AATT	1 cut(s)	463
MnlI	CCTC	3 cut(s)	19, 145, 335
Mph1103I	ATGCAT	1 cut(s)	316
MroI	TCCGGA	1 cut(s)	507
MroXI	GAANNNNTTC	2 cut(s)	173, 373
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	2 cut(s)	268, 508
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	270
NdeII	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	475
PdmI	GAANNNNTTC	2 cut(s)	173, 373
PflFI	GACNNNGTC	1 cut(s)	497
PflMI	CCANNNNNTGG	1 cut(s)	567
PkrI	GCNGC	6 cut(s)	7, 66, 69, 221, 266, 419
Psp6I	CCWGG	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	323
PsuI	RGATCY	3 cut(s)	157, 484, 535
PsyI	GACNNNGTC	1 cut(s)	497
RseI	CAYNNNNRTG	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	475
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	6 cut(s)	6, 65, 68, 220, 265, 418
Sau3AI	GATC	8 cut(s)	33, 46, 157, 231, 292, 298, 484, 535
ScrFI	CCNGG	1 cut(s)	366
SetI	ASST	5 cut(s)	174, 327, 355, 390, 430
SfaNI	GCATC	2 cut(s)	282, 301
SfcI	CTRYAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	463
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	2 cut(s)	277, 458
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	3 cut(s)	36, 301, 532
TasI	AATT	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	6 cut(s)	5, 64, 67, 219, 264, 417
TspDTI	ATGAA	4 cut(s)	359, 420, 453, 528
TspRI	CASTG	1 cut(s)	18
Tth111I	GACNNNGTC	1 cut(s)	497
Van91I	CCANNNNNTGG	1 cut(s)	567
XmnI	GAANNNNTTC	2 cut(s)	173, 373
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.