Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006890

Physical Location & Seq

Genomic Coordinates Reverse (-)

61134021 .. 61143494

Gene Structure 9474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCAATACAGGGAACCCCAATTTGGGCTCATGATAGGTGCCTACGTGGAGACGCAATTGGAGAAGGACCCGCTCGATACCATGTTAAACAGCAACAAGCGTGGCCCGTGGCCTACCATTTTCTTGCACATGTTGGCCGTCAATCTGCAGAGGAAGATCGTAGATTGAAGGTTTTCAAGAAGGAGTGGTTTGAAGGCAAGGACTGTCTTGACATTCGCTGCTATTCGGGGTTATCACTATACAAATCGGTCCCCCCGTGGCGTGTTAGTGCTACAAACAATGAAGAGGCTGCTGCCAAGGTAGCTGCAGCAAATGCCGACAGAGGAGCTCCAACAATGTATCGTCCTTCACATATTAAAACTGGTTTGATCTCACTTTCAATATCGGGGCATAGTTTTCCGTTCGCAGTATTCTATTTTACCGTAAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016073 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0034660 GO:0040031 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bin3 Methyltransf_18 Methyltransf_4 PrmA

Protein Analysis

144

Amino Acids

16.2

Weight (kDa)

9.37

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51130 AT5G51130
fragaria_vesca	FvH4_1g05710 FvH4_1g05710
malus_domestica	MD02G1058100.v1.1 MD02G1058200.v1.1 MD15G1192600.v1.1
prunus_persica	Prupe.7G224700_v2.0.a1
pyrus_communis	pycom02g04720 pycom15g17230
rosa_chinensis	RchiOBHm_Chr2g0091361
rosa_laevigata	RLG00000016215
rosa_multiflora	Rmu_sc0002270.1_g000052
rosa_roxburghii	Rroxscaffold_1G00004170 Rroxscaffold_2G00126060 Rroxscaffold_2G00150180 Rroxscaffold_2G00152470
rosa_rugosa	Rorug02G0016900
rosa_samantha	Rh2AG061600 Rh2BG061000 Rh2CG063100 Rh2CG415600 Rh2DG061600 Rh5AG127900 Rh7BG272900
rosa_wichuraiana	Rw2G004810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AccBSI	CCGCTC	1 cut(s)	74
AciI	CCGC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	24, 25
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	4 cut(s)	169, 178, 194, 381
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	2 cut(s)	305, 329
AluI	AGCT	2 cut(s)	305, 329
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	45
AoxI	GGCC	3 cut(s)	104, 111, 136
ApeKI	GCWGC	5 cut(s)	219, 290, 293, 305, 308
Asp700I	GAANNNNTTC	1 cut(s)	173
AspS9I	GGNCC	3 cut(s)	68, 105, 250
AvaII	GGWCC	2 cut(s)	68, 250
BanI	GGYRCC	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	31, 331
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	5 cut(s)	206, 277, 280, 292, 320
BceAI	ACGGC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	45
BfmI	CTRYAG	2 cut(s)	147, 306
BisI	GCNGC	5 cut(s)	220, 291, 294, 306, 309
BlsI	GCNGC	5 cut(s)	221, 292, 295, 307, 310
Bme18I	GGWCC	2 cut(s)	68, 250
BmgT120I	GGNCC	3 cut(s)	68, 105, 250
BmiI	GGNNCC	4 cut(s)	16, 41, 70, 252
BsaAI	YACGTR	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	108, 257, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 25
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	3 cut(s)	108, 257, 297
BseLI	CCNNNNNNNGG	2 cut(s)	24, 25
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	5 cut(s)	206, 277, 280, 292, 320
BshFI	GGCC	3 cut(s)	106, 113, 138
BshNI	GGYRCC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	24, 25
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	3 cut(s)	106, 113, 138
Bsp1286I	GDGCHC	2 cut(s)	31, 331
Bsp143I	GATC	2 cut(s)	157, 369
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	3 cut(s)	106, 113, 138
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	4 cut(s)	16, 41, 70, 252
BspMAI	CTGCAG	2 cut(s)	151, 310
BspT107I	GGYRCC	1 cut(s)	39
BsrBI	CCGCTC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	108, 257, 297
BssMI	GATC	2 cut(s)	157, 369
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	206, 424
Bst6I	CTCTTC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	47
BstDSI	CCRYGG	2 cut(s)	108, 257
BstKTI	GATC	2 cut(s)	160, 372
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	2 cut(s)	157, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 314
BstNSI	RCATGY	1 cut(s)	134
BstSFI	CTRYAG	2 cut(s)	147, 306
BstV1I	GCAGC	5 cut(s)	206, 277, 280, 292, 320
BsuRI	GGCC	3 cut(s)	106, 113, 138
BtgI	CCRYGG	2 cut(s)	108, 257
CciI	TCATGA	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	68, 105, 250
CseI	GACGC	1 cut(s)	62
CspCI	CAANNNNNGTGG	2 cut(s)	83, 118
CviAII	CATG	3 cut(s)	32, 83, 131
CviJI	RGCY	7 cut(s)	29, 106, 113, 138, 290, 305, 329
CviKI_1	RGCY	7 cut(s)	29, 106, 113, 138, 290, 305, 329
DpnI	GATC	2 cut(s)	159, 371
DpnII	GATC	2 cut(s)	157, 369
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	31, 331
Eco47I	GGWCC	2 cut(s)	68, 250
Eco53kI	GAGCTC	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	2 cut(s)	31, 331
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	3 cut(s)	35, 86, 134
FaiI	YATR	6 cut(s)	33, 84, 132, 241, 354, 393
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	3 cut(s)	31, 82, 130
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	5 cut(s)	220, 291, 294, 306, 309
FriOI	GRGCYC	2 cut(s)	31, 331
Fsp4HI	GCNGC	5 cut(s)	220, 291, 294, 306, 309
GluI	GCNGC	5 cut(s)	220, 291, 294, 306, 309
HaeIII	GGCC	3 cut(s)	106, 113, 138
HgaI	GACGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	35, 86, 134
Hpy188III	TCNNGA	3 cut(s)	32, 178, 209
HpyAV	CCTTC	5 cut(s)	59, 163, 175, 188, 357
HpyCH4III	ACNGT	2 cut(s)	206, 424
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	128, 149, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 314
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	3 cut(s)	35, 86, 134
Kzo9I	GATC	2 cut(s)	157, 369
LmnI	GCTCC	2 cut(s)	326, 334
LpnPI	CCDG	1 cut(s)	348
Lsp1109I	GCAGC	5 cut(s)	206, 277, 280, 292, 320
MaeII	ACGT	1 cut(s)	46
MalI	GATC	2 cut(s)	159, 371
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	2 cut(s)	157, 369
MboII	GAAGA	2 cut(s)	167, 296
MfeI	CAATTG	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	31, 331
MluCI	AATT	2 cut(s)	21, 57
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	3 cut(s)	145, 280, 317
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	2 cut(s)	87, 357
MunI	CAATTG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	302, 314
NdeII	GATC	2 cut(s)	157, 369
NlaIII	CATG	3 cut(s)	35, 86, 134
NlaIV	GGNNCC	4 cut(s)	16, 41, 70, 252
NspI	RCATGY	1 cut(s)	134
PagI	TCATGA	1 cut(s)	31
PciI	ACATGT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	173
PkrI	GCNGC	5 cut(s)	221, 292, 295, 307, 310
Ppu21I	YACGTR	1 cut(s)	47
PpuMI	RGGWCCY	1 cut(s)	68
PscI	ACATGT	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	68
PspN4I	GGNNCC	4 cut(s)	16, 41, 70, 252
PspPI	GGNCC	3 cut(s)	68, 105, 250
PspPPI	RGGWCCY	1 cut(s)	68
PstI	CTGCAG	2 cut(s)	151, 310
SacI	GAGCTC	1 cut(s)	331
SaqAI	TTAA	2 cut(s)	87, 357
SatI	GCNGC	5 cut(s)	220, 291, 294, 306, 309
Sau3AI	GATC	2 cut(s)	157, 369
Sau96I	GGNCC	3 cut(s)	68, 105, 250
SduI	GDGCHC	2 cut(s)	31, 331
SetI	ASST	6 cut(s)	41, 49, 174, 303, 307, 331
SfcI	CTRYAG	2 cut(s)	147, 306
SinI	GGWCC	2 cut(s)	68, 250
Sse9I	AATT	2 cut(s)	21, 57
SsiI	CCGC	1 cut(s)	72
SstI	GAGCTC	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	206, 424
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	76
TaqII	GACCGA	1 cut(s)	238
TasI	AATT	2 cut(s)	21, 57
Tru1I	TTAA	2 cut(s)	87, 357
Tru9I	TTAA	2 cut(s)	87, 357
TseI	GCWGC	5 cut(s)	219, 290, 293, 305, 308
TspDTI	ATGAA	1 cut(s)	297
TspGWI	ACGGA	1 cut(s)	390
VpaK11BI	GGWCC	2 cut(s)	68, 250
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.