RNA methyltransferase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RING_2 | PF13639 | 148 - 191 | 1.4e-12 | Ring finger domain |
| zf-RING_11 | PF17123 | 149 - 176 | 1.7e-10 | RING-like zinc finger |
| zf-C3HC4_2 | PF13923 | 149 - 190 | 2.6e-08 | Zinc finger, C3HC4 type (RING finger) |
| zf-C3HC4 | PF00097 | 150 - 190 | 9e-06 | Zinc finger, C3HC4 type (RING finger) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 504 |
| Acc16I | TGCGCA | 1 cut(s) | 505 |
| Acc36I | ACCTGC | 1 cut(s) | 504 |
| AccBSI | CCGCTC | 1 cut(s) | 57 |
| AciI | CCGC | 2 cut(s) | 5, 57 |
| AclWI | GGATC | 2 cut(s) | 307, 376 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 541 |
| AgsI | TTSAA | 1 cut(s) | 178 |
| AjnI | CCWGG | 3 cut(s) | 16, 180, 475 |
| AluBI | AGCT | 3 cut(s) | 408, 423, 584 |
| AluI | AGCT | 3 cut(s) | 408, 423, 584 |
| Alw21I | GWGCWC | 2 cut(s) | 34, 495 |
| Alw26I | GTCTC | 2 cut(s) | 194, 476 |
| Alw44I | GTGCAC | 1 cut(s) | 491 |
| AlwI | GGATC | 2 cut(s) | 307, 376 |
| AoxI | GGCC | 2 cut(s) | 411, 473 |
| ApaLI | GTGCAC | 1 cut(s) | 491 |
| ApeKI | GCWGC | 1 cut(s) | 90 |
| AspLEI | GCGC | 2 cut(s) | 452, 506 |
| AspS9I | GGNCC | 2 cut(s) | 411, 532 |
| AsuHPI | GGTGA | 1 cut(s) | 491 |
| AsuNHI | GCTAGC | 1 cut(s) | 122 |
| AvaII | GGWCC | 1 cut(s) | 532 |
| BaeGI | GKGCMC | 1 cut(s) | 495 |
| BbsI | GAAGAC | 2 cut(s) | 46, 383 |
| Bbv12I | GWGCWC | 2 cut(s) | 34, 495 |
| BbvI | GCAGC | 1 cut(s) | 77 |
| BccI | CCATC | 2 cut(s) | 57, 314 |
| BciT130I | CCWGG | 3 cut(s) | 18, 182, 477 |
| BcoDI | GTCTC | 2 cut(s) | 194, 476 |
| BfaI | CTAG | 3 cut(s) | 123, 206, 384 |
| BfmI | CTRYAG | 1 cut(s) | 585 |
| BfuAI | ACCTGC | 1 cut(s) | 504 |
| BglII | AGATCT | 1 cut(s) | 326 |
| BisI | GCNGC | 2 cut(s) | 58, 91 |
| BlsI | GCNGC | 2 cut(s) | 59, 92 |
| Bme1390I | CCNGG | 3 cut(s) | 18, 182, 477 |
| Bme18I | GGWCC | 1 cut(s) | 532 |
| BmgT120I | GGNCC | 2 cut(s) | 411, 532 |
| BmiI | GGNNCC | 2 cut(s) | 515, 534 |
| BmrFI | CCNGG | 3 cut(s) | 18, 182, 477 |
| BmrI | ACTGGG | 2 cut(s) | 399, 589 |
| BmtI | GCTAGC | 1 cut(s) | 126 |
| BmuI | ACTGGG | 2 cut(s) | 399, 589 |
| BpiI | GAAGAC | 2 cut(s) | 46, 383 |
| BpmI | CTGGAG | 1 cut(s) | 563 |
| BpuEI | CTTGAG | 1 cut(s) | 482 |
| BsaJI | CCNNGG | 1 cut(s) | 536 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 541 |
| Bse1I | ACTGG | 2 cut(s) | 394, 595 |
| Bse3DI | GCAATG | 1 cut(s) | 556 |
| BseBI | CCWGG | 3 cut(s) | 18, 182, 477 |
| BseDI | CCNNGG | 1 cut(s) | 536 |
| BseGI | GGATG | 3 cut(s) | 15, 202, 322 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 541 |
| BseMI | GCAATG | 1 cut(s) | 556 |
| BseMII | CTCAG | 2 cut(s) | 332, 513 |
| BseNI | ACTGG | 2 cut(s) | 394, 595 |
| BseSI | GKGCMC | 1 cut(s) | 495 |
| BseXI | GCAGC | 1 cut(s) | 77 |
| BseYI | CCCAGC | 1 cut(s) | 408 |
| BsgI | GTGCAG | 1 cut(s) | 76 |
| BshFI | GGCC | 2 cut(s) | 413, 475 |
| BsiHKAI | GWGCWC | 2 cut(s) | 34, 495 |
| BslFI | GGGAC | 2 cut(s) | 518, 577 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 541 |
| BsmAI | GTCTC | 2 cut(s) | 194, 476 |
| BsmBI | CGTCTC | 1 cut(s) | 194 |
| BsmFI | GGGAC | 2 cut(s) | 518, 577 |
| BsnI | GGCC | 2 cut(s) | 413, 475 |
| Bsp1286I | GDGCHC | 2 cut(s) | 34, 495 |
| Bsp143I | GATC | 3 cut(s) | 299, 326, 368 |
| Bsp19I | CCATGG | 1 cut(s) | 536 |
| BspACI | CCGC | 2 cut(s) | 5, 57 |
| BspANI | GGCC | 2 cut(s) | 413, 475 |
| BspCNI | CTCAG | 2 cut(s) | 333, 514 |
| BspLI | GGNNCC | 2 cut(s) | 515, 534 |
| BspMI | ACCTGC | 1 cut(s) | 504 |
| BspOI | GCTAGC | 1 cut(s) | 126 |
| BspPI | GGATC | 2 cut(s) | 307, 376 |
| BsrBI | CCGCTC | 1 cut(s) | 57 |
| BsrDI | GCAATG | 1 cut(s) | 556 |
| BsrI | ACTGG | 2 cut(s) | 394, 595 |
| BssECI | CCNNGG | 1 cut(s) | 536 |
| BssMI | GATC | 3 cut(s) | 299, 326, 368 |
| BssT1I | CCWWGG | 1 cut(s) | 536 |
| Bst2UI | CCWGG | 3 cut(s) | 18, 182, 477 |
| BstC8I | GCNNGC | 1 cut(s) | 124 |
| BstDEI | CTNAG | 2 cut(s) | 341, 522 |
| BstDSI | CCRYGG | 1 cut(s) | 536 |
| BstF5I | GGATG | 3 cut(s) | 15, 202, 322 |
| BstHHI | GCGC | 2 cut(s) | 452, 506 |
| BstKTI | GATC | 3 cut(s) | 302, 329, 371 |
| BstMAI | GTCTC | 2 cut(s) | 194, 476 |
| BstMBI | GATC | 3 cut(s) | 299, 326, 368 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 99, 224, 456 |
| BstNI | CCWGG | 3 cut(s) | 18, 182, 477 |
| BstNSI | RCATGY | 1 cut(s) | 175 |
| BstSCI | CCNGG | 3 cut(s) | 16, 180, 475 |
| BstSFI | CTRYAG | 1 cut(s) | 585 |
| BstSLI | GKGCMC | 1 cut(s) | 495 |
| BstV1I | GCAGC | 1 cut(s) | 77 |
| BstV2I | GAAGAC | 2 cut(s) | 46, 383 |
| BstX2I | RGATCY | 1 cut(s) | 326 |
| BstYI | RGATCY | 1 cut(s) | 326 |
| BsuRI | GGCC | 2 cut(s) | 413, 475 |
| BtgI | CCRYGG | 1 cut(s) | 536 |
| BtsCI | GGATG | 3 cut(s) | 15, 202, 322 |
| BveI | ACCTGC | 1 cut(s) | 504 |
| Cac8I | GCNNGC | 1 cut(s) | 124 |
| CfoI | GCGC | 2 cut(s) | 452, 506 |
| Cfr13I | GGNCC | 2 cut(s) | 411, 532 |
| CseI | GACGC | 2 cut(s) | 108, 211 |
| CviAII | CATG | 4 cut(s) | 131, 172, 334, 537 |
| DdeI | CTNAG | 2 cut(s) | 341, 522 |
| DpnI | GATC | 3 cut(s) | 301, 328, 370 |
| DpnII | GATC | 3 cut(s) | 299, 326, 368 |
| Eco130I | CCWWGG | 1 cut(s) | 536 |
| Eco147I | AGGCCT | 1 cut(s) | 475 |
| Eco47I | GGWCC | 1 cut(s) | 532 |
| EcoRII | CCWGG | 3 cut(s) | 16, 180, 475 |
| EcoT14I | CCWWGG | 1 cut(s) | 536 |
| ErhI | CCWWGG | 1 cut(s) | 536 |
| Esp3I | CGTCTC | 1 cut(s) | 194 |
| FaeI | CATG | 4 cut(s) | 134, 175, 337, 540 |
| FaqI | GGGAC | 2 cut(s) | 518, 577 |
| FatI | CATG | 4 cut(s) | 130, 171, 333, 536 |
| Fnu4HI | GCNGC | 2 cut(s) | 58, 91 |
| FokI | GGATG | 3 cut(s) | 22, 209, 329 |
| Fsp4HI | GCNGC | 2 cut(s) | 58, 91 |
| FspBI | CTAG | 3 cut(s) | 123, 206, 384 |
| FspI | TGCGCA | 1 cut(s) | 505 |
| GlaI | GCGC | 2 cut(s) | 451, 505 |
| GluI | GCNGC | 2 cut(s) | 58, 91 |
| GsaI | CCCAGC | 1 cut(s) | 412 |
| GsuI | CTGGAG | 1 cut(s) | 563 |
| HaeIII | GGCC | 2 cut(s) | 413, 475 |
| HgaI | GACGC | 2 cut(s) | 108, 211 |
| HhaI | GCGC | 2 cut(s) | 452, 506 |
| Hin1II | CATG | 4 cut(s) | 134, 175, 337, 540 |
| Hin6I | GCGC | 2 cut(s) | 450, 504 |
| HinP1I | GCGC | 2 cut(s) | 450, 504 |
| HinfI | GANTC | 4 cut(s) | 45, 62, 337, 484 |
| HphI | GGTGA | 1 cut(s) | 491 |
| Hpy166II | GTNNAC | 1 cut(s) | 493 |
| Hpy188I | TCNGA | 4 cut(s) | 54, 342, 436, 523 |
| Hpy188III | TCNNGA | 1 cut(s) | 396 |
| Hpy8I | GTNNAC | 1 cut(s) | 493 |
| HpyAV | CCTTC | 1 cut(s) | 290 |
| HpyCH4V | TGCA | 4 cut(s) | 93, 163, 352, 493 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 99, 224, 456 |
| HpyF3I | CTNAG | 2 cut(s) | 341, 522 |
| Hsp92II | CATG | 4 cut(s) | 134, 175, 337, 540 |
| HspAI | GCGC | 2 cut(s) | 450, 504 |
| Kzo9I | GATC | 3 cut(s) | 299, 326, 368 |
| Lsp1109I | GCAGC | 1 cut(s) | 77 |
| MaeI | CTAG | 3 cut(s) | 123, 206, 384 |
| MalI | GATC | 3 cut(s) | 301, 328, 370 |
| MbiI | CCGCTC | 1 cut(s) | 57 |
| MboI | GATC | 3 cut(s) | 299, 326, 368 |
| MboII | GAAGA | 4 cut(s) | 48, 51, 336, 388 |
| MflI | RGATCY | 1 cut(s) | 326 |
| MhlI | GDGCHC | 2 cut(s) | 34, 495 |
| MluCI | AATT | 1 cut(s) | 285 |
| MlyI | GAGTC | 2 cut(s) | 54, 478 |
| MnlI | CCTC | 3 cut(s) | 157, 336, 459 |
| MspA1I | CMGCKG | 2 cut(s) | 408, 423 |
| MspR9I | CCNGG | 3 cut(s) | 18, 182, 477 |
| MvaI | CCWGG | 3 cut(s) | 18, 182, 477 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 99, 224, 456 |
| NcoI | CCATGG | 1 cut(s) | 536 |
| NdeII | GATC | 3 cut(s) | 299, 326, 368 |
| NheI | GCTAGC | 1 cut(s) | 122 |
| NlaIII | CATG | 4 cut(s) | 134, 175, 337, 540 |
| NlaIV | GGNNCC | 2 cut(s) | 515, 534 |
| NsbI | TGCGCA | 1 cut(s) | 505 |
| NspI | RCATGY | 1 cut(s) | 175 |
| PaqCI | CACCTGC | 1 cut(s) | 504 |
| PceI | AGGCCT | 1 cut(s) | 475 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 40 |
| PfeI | GAWTC | 2 cut(s) | 62, 337 |
| PflFI | GACNNNGTC | 1 cut(s) | 391 |
| PkrI | GCNGC | 2 cut(s) | 59, 92 |
| PleI | GAGTC | 2 cut(s) | 53, 478 |
| PpsI | GAGTC | 2 cut(s) | 53, 478 |
| Psp6I | CCWGG | 3 cut(s) | 16, 180, 475 |
| PspFI | CCCAGC | 1 cut(s) | 408 |
| PspGI | CCWGG | 3 cut(s) | 16, 180, 475 |
| PspN4I | GGNNCC | 2 cut(s) | 515, 534 |
| PspPI | GGNCC | 2 cut(s) | 411, 532 |
| PsuI | RGATCY | 1 cut(s) | 326 |
| PsyI | GACNNNGTC | 1 cut(s) | 391 |
| PvuII | CAGCTG | 2 cut(s) | 408, 423 |
| SatI | GCNGC | 2 cut(s) | 58, 91 |
| Sau3AI | GATC | 3 cut(s) | 299, 326, 368 |
| Sau96I | GGNCC | 2 cut(s) | 411, 532 |
| SchI | GAGTC | 2 cut(s) | 54, 478 |
| ScrFI | CCNGG | 3 cut(s) | 18, 182, 477 |
| SduI | GDGCHC | 2 cut(s) | 34, 495 |
| SetI | ASST | 7 cut(s) | 149, 410, 425, 470, 498, 515, 586 |
| SfcI | CTRYAG | 1 cut(s) | 585 |
| SinI | GGWCC | 1 cut(s) | 532 |
| SmlI | CTYRAG | 1 cut(s) | 461 |
| SmoI | CTYRAG | 1 cut(s) | 461 |
| Sse9I | AATT | 1 cut(s) | 285 |
| SseBI | AGGCCT | 1 cut(s) | 475 |
| SsiI | CCGC | 2 cut(s) | 5, 57 |
| SspMI | CTAG | 3 cut(s) | 123, 206, 384 |
| StuI | AGGCCT | 1 cut(s) | 475 |
| StyD4I | CCNGG | 3 cut(s) | 16, 180, 475 |
| StyI | CCWWGG | 1 cut(s) | 536 |
| TaqI | TCGA | 1 cut(s) | 34 |
| TasI | AATT | 1 cut(s) | 285 |
| TauI | GCSGC | 1 cut(s) | 60 |
| TfiI | GAWTC | 2 cut(s) | 62, 337 |
| TseI | GCWGC | 1 cut(s) | 90 |
| TspDTI | ATGAA | 3 cut(s) | 147, 177, 258 |
| Tth111I | GACNNNGTC | 1 cut(s) | 391 |
| VneI | GTGCAC | 1 cut(s) | 491 |
| VpaK11BI | GGWCC | 1 cut(s) | 532 |
| XceI | RCATGY | 1 cut(s) | 175 |
| XspI | CTAG | 3 cut(s) | 123, 206, 384 |