FvH4_1g03530

F-box protein At5g07610-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
1924616 .. 1927254
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03530.t1

Sequence Viewer

Length: 867 bp
ATGTCCGACGAATATGGTGATAACAAGTCTCTAATCATTTGTAGCTTTGAAACTCACAAAAAGTCCACCATCCCTCCTGCGGGACAAGTGGCCAATCTGGTCGACGATGATCTCCCATATGAAGGGGGTTGCGGTGTTTTCGGCTCCAAGATCGTTTTCGCCAGCGGCTTGAAACCCAACTCCAATCCGGTTTTCGGATTCCCATTCGGCCCTCTTGCCACCACAGATGCATATGCCTTTGATGTCCATGACCCCAACCAAGGAATAGTCGAGATGCCCGCTTTGAACGGAGGGAAGCATGAACCGTTGATGACTGAGTTTGCCGGCAAACTCTATGTACTGTCCCTTAAGGAGTATAACACTTACGTTTCATTTGAGGTATTTGACCCCCAACAGGGTACTTGGTCACGTCTGCCAAAATATCCCAATCATGGCCTCCTCTACTCTTATGCAATAGCCGGAACCAAATTGTTTATGTCTACCCCAGTGCCAGAGGGCGAAGAAAACTACTACAGCAACTACCTTAAACAGGACCCTTCAATTCGCTGCTTTGACCTTGCGGCCACAGCAGTTGCGTTCTCCTCCGGCGAACCTTCTTCTGTTTTTCCTTCACCCTCGCCGGCCGAAACCATTGCCAACCACGACGCAGATCCTCCTCCGCTGCTCTCCCTCATTTCCATCCCCAAATTCCGCGACCGCCACACCCTCCGAAACCCTACCCCTCCTCTCTCCGCCTTCTTCTTCCTCTACACCTCTCCGGATCCCTCTCCTCTCCCCTCCATTCTCTCCCGGAGCTCCGACGAGCCAAGAATCTCGAGAGAAAGGAAGAAGAAGCTTCGCCGGAGGAGAACGTGTGTGCTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

289

Amino Acids

31.82

Weight (kDa)

6.09

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 102, 479
AccII CGCG 1 cut(s) 693
AccIII TCCGGA 1 cut(s) 757
AciI CCGC 9 cut(s) 80, 132, 165, 279, 560, 659, 691, 697, 732
AclWI GGATC 3 cut(s) 644, 755, 768
AcoI YGGCCR 3 cut(s) 90, 561, 621
AcsI RAATTY 1 cut(s) 686
AfaI GTAC 2 cut(s) 339, 400
AfiI CCNNNNNNNGG 9 cut(s) 79, 80, 122, 194, 260, 394, 395, 431, 529
AflII CTTAAG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 851
AgsI TTSAA 4 cut(s) 50, 172, 286, 540
AjiI CACGTC 1 cut(s) 410
AjuI GAANNNNNNNTTGG 4 cut(s) 140, 172, 176, 208
AluBI AGCT 3 cut(s) 45, 795, 835
AluI AGCT 3 cut(s) 45, 795, 835
Alw21I GWGCWC 1 cut(s) 797
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 3 cut(s) 644, 755, 768
Ama87I CYCGRG 1 cut(s) 814
Aor13HI TCCGGA 1 cut(s) 757
AoxI GGCC 5 cut(s) 90, 208, 433, 561, 621
ApeKI GCWGC 3 cut(s) 546, 661, 859
ApoI RAATTY 1 cut(s) 686
AspS9I GGNCC 2 cut(s) 209, 532
AsuC2I CCSGG 1 cut(s) 790
AsuHPI GGTGA 2 cut(s) 29, 603
AvaI CYCGRG 1 cut(s) 814
AvaII GGWCC 1 cut(s) 532
BalI TGGCCA 1 cut(s) 92
BamHI GGATCC 1 cut(s) 760
BanII GRGCYC 1 cut(s) 797
Bbv12I GWGCWC 1 cut(s) 797
BbvI GCAGC 3 cut(s) 533, 648, 846
BccI CCATC 2 cut(s) 77, 686
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BcnI CCSGG 1 cut(s) 790
BcoDI GTCTC 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 511
BfrI CTTAAG 1 cut(s) 347
BisI GCNGC 5 cut(s) 166, 547, 561, 662, 860
BlsI GCNGC 5 cut(s) 167, 548, 562, 663, 861
Bme1390I CCNGG 1 cut(s) 790
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 814
BmgBI CACGTC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 209, 532
BmiI GGNNCC 4 cut(s) 145, 463, 534, 762
BmrFI CCNGG 1 cut(s) 790
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 2 cut(s) 217, 264
BmuI ACTGGG 1 cut(s) 479
BpuMI CCSGG 1 cut(s) 790
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 2 cut(s) 187, 757
BsaXI ACNNNNNCTCC 3 cut(s) 58, 88, 838
Bsc4I CCNNNNNNNGG 9 cut(s) 79, 80, 122, 194, 260, 394, 395, 431, 529
Bse118I RCCGGY 2 cut(s) 323, 619
Bse1I ACTGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 630
BseAI TCCGGA 1 cut(s) 757
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 69, 678
BseLI CCNNNNNNNGG 9 cut(s) 79, 80, 122, 194, 260, 394, 395, 431, 529
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 485
BseRI GAGGAG 6 cut(s) 428, 571, 645, 714, 759, 859
BseX3I CGGCCG 1 cut(s) 621
BseXI GCAGC 3 cut(s) 533, 648, 846
Bsh1236I CGCG 1 cut(s) 693
Bsh1285I CGRYCG 2 cut(s) 624, 697
BshFI GGCC 5 cut(s) 92, 210, 435, 563, 623
BsiEI CGRYCG 2 cut(s) 624, 697
BsiHKAI GWGCWC 1 cut(s) 797
BsiHKCI CYCGRG 1 cut(s) 814
BsiSI CCGG 8 cut(s) 188, 324, 459, 585, 620, 758, 790, 841
BslFI GGGAC 2 cut(s) 96, 328
BslI CCNNNNNNNGG 9 cut(s) 79, 80, 122, 194, 260, 394, 395, 431, 529
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 2 cut(s) 96, 328
BsnI GGCC 5 cut(s) 92, 210, 435, 563, 623
BsoBI CYCGRG 1 cut(s) 814
Bsp1286I GDGCHC 1 cut(s) 797
Bsp13I TCCGGA 1 cut(s) 757
Bsp143I GATC 4 cut(s) 109, 150, 649, 760
BspACI CCGC 9 cut(s) 80, 132, 165, 279, 560, 659, 691, 697, 732
BspANI GGCC 5 cut(s) 92, 210, 435, 563, 623
BspCNI CTCAG 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 757
BspFNI CGCG 1 cut(s) 693
BspLI GGNNCC 4 cut(s) 145, 463, 534, 762
BspPI GGATC 3 cut(s) 644, 755, 768
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 630
BsrFI RCCGGY 2 cut(s) 323, 619
BsrI ACTGG 1 cut(s) 485
BssAI RCCGGY 2 cut(s) 323, 619
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 4 cut(s) 109, 150, 649, 760
BssT1I CCWWGG 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 306, 342
BstAFI CTTAAG 1 cut(s) 347
BstC8I GCNNGC 4 cut(s) 163, 279, 325, 621
BstDEI CTNAG 1 cut(s) 315
BstENI CCTNNNNNAGG 1 cut(s) 527
BstF5I GGATG 2 cut(s) 69, 678
BstFNI CGCG 1 cut(s) 693
BstKTI GATC 4 cut(s) 112, 153, 652, 763
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 4 cut(s) 109, 150, 649, 760
BstMCI CGRYCG 2 cut(s) 624, 697
BstMWI GCNNNNNNNGC 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 788
BstSFI CTRYAG 1 cut(s) 511
BstUI CGCG 1 cut(s) 693
BstV1I GCAGC 3 cut(s) 533, 648, 846
BstX2I RGATCY 2 cut(s) 649, 760
BstYI RGATCY 2 cut(s) 649, 760
BstZI CGGCCG 1 cut(s) 621
BsuRI GGCC 5 cut(s) 92, 210, 435, 563, 623
BtrI CACGTC 1 cut(s) 410
BtsCI GGATG 2 cut(s) 69, 678
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 4 cut(s) 163, 279, 325, 621
Cfr10I RCCGGY 2 cut(s) 323, 619
Cfr13I GGNCC 2 cut(s) 209, 532
CseI GACGC 1 cut(s) 653
Csp6I GTAC 2 cut(s) 338, 399
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 3 cut(s) 248, 299, 431
CviQI GTAC 2 cut(s) 338, 399
DdeI CTNAG 1 cut(s) 315
DpnI GATC 4 cut(s) 111, 152, 651, 762
DpnII GATC 4 cut(s) 109, 150, 649, 760
EaeI YGGCCR 3 cut(s) 90, 561, 621
EagI CGGCCG 1 cut(s) 621
EciI GGCGGA 1 cut(s) 721
Ecl136II GAGCTC 1 cut(s) 795
EclXI CGGCCG 1 cut(s) 621
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 797
Eco47I GGWCC 1 cut(s) 532
Eco52I CGGCCG 1 cut(s) 621
Eco53kI GAGCTC 1 cut(s) 795
Eco88I CYCGRG 1 cut(s) 814
EcoICRI GAGCTC 1 cut(s) 795
EcoNI CCTNNNNNAGG 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 797
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 3 cut(s) 251, 302, 434
FaqI GGGAC 2 cut(s) 96, 328
FatI CATG 3 cut(s) 247, 298, 430
FauI CCCGC 2 cut(s) 73, 286
FauNDI CATATG 2 cut(s) 118, 232
FblI GTMKAC 2 cut(s) 102, 479
Fnu4HI GCNGC 5 cut(s) 166, 547, 561, 662, 860
FokI GGATG 2 cut(s) 56, 665
FriOI GRGCYC 1 cut(s) 797
Fsp4HI GCNGC 5 cut(s) 166, 547, 561, 662, 860
GluI GCNGC 5 cut(s) 166, 547, 561, 662, 860
HaeIII GGCC 5 cut(s) 92, 210, 435, 563, 623
HapII CCGG 8 cut(s) 188, 324, 459, 585, 620, 758, 790, 841
HgaI GACGC 1 cut(s) 653
Hin1II CATG 3 cut(s) 251, 302, 434
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 2 cut(s) 198, 810
HpaII CCGG 8 cut(s) 188, 324, 459, 585, 620, 758, 790, 841
HphI GGTGA 2 cut(s) 29, 603
Hpy166II GTNNAC 3 cut(s) 66, 103, 480
Hpy188I TCNGA 4 cut(s) 7, 197, 710, 799
Hpy188III TCNNGA 4 cut(s) 271, 758, 814, 816
Hpy8I GTNNAC 3 cut(s) 66, 103, 480
Hpy99I CGWCG 4 cut(s) 11, 107, 647, 803
HpyAV CCTTC 5 cut(s) 116, 546, 603, 618, 745
HpyCH4III ACNGT 2 cut(s) 306, 342
HpyCH4IV ACGT 3 cut(s) 366, 409, 851
HpyCH4V TGCA 2 cut(s) 230, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 566
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 3 cut(s) 366, 409, 851
Hsp92II CATG 3 cut(s) 251, 302, 434
Kpn2I TCCGGA 1 cut(s) 757
KroI GCCGGC 2 cut(s) 323, 619
KroNI GCCGGC 2 cut(s) 325, 621
Kzo9I GATC 4 cut(s) 109, 150, 649, 760
LmnI GCTCC 3 cut(s) 149, 792, 800
Lsp1109I GCAGC 3 cut(s) 533, 648, 846
LweI GCATC 2 cut(s) 217, 264
MaeII ACGT 3 cut(s) 366, 409, 851
MaeIII GTNAC 1 cut(s) 405
MalI GATC 4 cut(s) 111, 152, 651, 762
MboI GATC 4 cut(s) 109, 150, 649, 760
MboII GAAGA 6 cut(s) 512, 588, 730, 733, 838, 841
MflI RGATCY 2 cut(s) 649, 760
MhlI GDGCHC 1 cut(s) 797
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 3 cut(s) 467, 540, 686
MluNI TGGCCA 1 cut(s) 92
MmeI TCCRAC 2 cut(s) 30, 822
Mox20I TGGCCA 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 232
MroI TCCGGA 1 cut(s) 757
MroNI GCCGGC 2 cut(s) 323, 619
MscI TGGCCA 1 cut(s) 92
MseI TTAA 2 cut(s) 348, 525
Msp20I TGGCCA 1 cut(s) 92
MspA1I CMGCKG 2 cut(s) 165, 661
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 8 cut(s) 188, 324, 459, 585, 620, 758, 790, 841
MspR9I CCNGG 1 cut(s) 790
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 1 cut(s) 566
NaeI GCCGGC 2 cut(s) 325, 621
NciI CCSGG 1 cut(s) 790
NdeI CATATG 2 cut(s) 118, 232
NdeII GATC 4 cut(s) 109, 150, 649, 760
NgoMIV GCCGGC 2 cut(s) 323, 619
NlaIII CATG 3 cut(s) 251, 302, 434
NlaIV GGNNCC 4 cut(s) 145, 463, 534, 762
NmuCI GTSAC 1 cut(s) 405
NsiI ATGCAT 1 cut(s) 232
PaeR7I CTCGAG 1 cut(s) 814
PdiI GCCGGC 2 cut(s) 325, 621
PfeI GAWTC 2 cut(s) 198, 810
PfoI TCCNGGA 1 cut(s) 788
PkrI GCNGC 5 cut(s) 167, 548, 562, 663, 861
PpuMI RGGWCCY 1 cut(s) 532
Psp124BI GAGCTC 1 cut(s) 797
Psp5II RGGWCCY 1 cut(s) 532
PspN4I GGNNCC 4 cut(s) 145, 463, 534, 762
PspPI GGNCC 2 cut(s) 209, 532
PspPPI RGGWCCY 1 cut(s) 532
PsuI RGATCY 2 cut(s) 649, 760
RsaI GTAC 2 cut(s) 339, 400
RsaNI GTAC 2 cut(s) 338, 399
SacI GAGCTC 1 cut(s) 797
SalI GTCGAC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 348, 525
SatI GCNGC 5 cut(s) 166, 547, 561, 662, 860
Sau3AI GATC 4 cut(s) 109, 150, 649, 760
Sau96I GGNCC 2 cut(s) 209, 532
ScrFI CCNGG 1 cut(s) 790
SduI GDGCHC 1 cut(s) 797
SfaNI GCATC 2 cut(s) 217, 264
SfcI CTRYAG 1 cut(s) 511
Sfr274I CTCGAG 1 cut(s) 814
SinI GGWCC 1 cut(s) 532
SlaI CTCGAG 1 cut(s) 814
SmlI CTYRAG 2 cut(s) 347, 814
SmoI CTYRAG 2 cut(s) 347, 814
Sse9I AATT 3 cut(s) 467, 540, 686
SsiI CCGC 9 cut(s) 80, 132, 165, 279, 560, 659, 691, 697, 732
SstI GAGCTC 1 cut(s) 797
StyD4I CCNGG 1 cut(s) 788
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 306, 342
TaiI ACGT 3 cut(s) 369, 412, 854
TaqI TCGA 3 cut(s) 102, 270, 815
TasI AATT 3 cut(s) 467, 540, 686
TatI WGTACW 1 cut(s) 337
TauI GCSGC 2 cut(s) 168, 563
TfiI GAWTC 2 cut(s) 198, 810
Tru1I TTAA 2 cut(s) 348, 525
Tru9I TTAA 2 cut(s) 348, 525
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 1 cut(s) 405
TseI GCWGC 3 cut(s) 546, 661, 859
Tsp45I GTSAC 1 cut(s) 405
TspDTI ATGAA 3 cut(s) 135, 315, 360
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 1 cut(s) 492
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 532
XagI CCTNNNNNAGG 1 cut(s) 527
XapI RAATTY 1 cut(s) 686
XhoI CTCGAG 1 cut(s) 814
XmiI GTMKAC 2 cut(s) 102, 479
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.