RchiOBHm_Chr2g0089871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000213
Physical Location & Seq
Forward (+)
3933530 .. 3934469
940 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46517

Sequence Viewer

Length: 420 bp
ATGCTCAAGAAGAAGTTACTGTTTGCCTACACCAATGATTGGCGTCTAGGAGTTTATATTCTGGCCTTGGATGAAAATCAAGAATCTATCACACAAATTGGTGATTGGAAGATCCCTTCGTGGCCTTATGAATTTGGTTACTTATCAGCATTTAGTATTGTGCACATAGGAGGTCCGAAAGCATGCTTTGTTATCACCCGGTTGGGCGTCCCAAGTGAATACAAAGCTGAACATGAGCCTGGGACTCATAAGACGTGGGGAATTGCCATACCATTTCAATTTGACCTTGATATCACCAAGGTGGACAAGGACAAGAAGAATTGTTTCACCCTCCAATTCATGTCTCTTCGCATCTTCGAGTACCATACCAACCCATCCAGTTTTCCAGAACCTGGACCGCTTGGTTGCTTTGTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.95

Weight (kDa)

6.4

Isoelectric Point (pI)

29.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 39, 392
AciI CCGC 1 cut(s) 398
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 131
AcyI GRCGYC 2 cut(s) 43, 207
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 2 cut(s) 39, 392
AgsI TTSAA 1 cut(s) 278
AjiI CACGTC 1 cut(s) 255
AjnI CCWGG 2 cut(s) 238, 391
AleI CACNNNNGTG 1 cut(s) 299
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 348
Alw44I GTGCAC 1 cut(s) 161
AlwI GGATC 1 cut(s) 106
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 2 cut(s) 63, 122
ApaLI GTGCAC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 173, 395
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 4 cut(s) 113, 187, 286, 319
AvaII GGWCC 2 cut(s) 173, 395
BaeGI GKGCMC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 165
BccI CCATC 1 cut(s) 382
BciT130I CCWGG 2 cut(s) 240, 393
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 1 cut(s) 47
Bme1390I CCNGG 3 cut(s) 199, 240, 393
Bme18I GGWCC 2 cut(s) 173, 395
BmgBI CACGTC 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 173, 395
BmrFI CCNGG 3 cut(s) 199, 240, 393
BmsI GCATC 1 cut(s) 360
BpuMI CCSGG 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 75
BsaHI GRCGYC 2 cut(s) 43, 207
BsaJI CCNNGG 3 cut(s) 66, 239, 297
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 392
Bse1I ACTGG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 2 cut(s) 240, 393
BseDI CCNNGG 3 cut(s) 66, 239, 297
BseGI GGATG 2 cut(s) 76, 374
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 39, 392
BseNI ACTGG 1 cut(s) 378
BseSI GKGCMC 1 cut(s) 165
BshFI GGCC 2 cut(s) 65, 124
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 199
BslFI GGGAC 2 cut(s) 194, 256
BslI CCNNNNNNNGG 2 cut(s) 39, 392
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 2 cut(s) 194, 256
BsnI GGCC 2 cut(s) 65, 124
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 1 cut(s) 398
BspANI GGCC 2 cut(s) 65, 124
BspPI GGATC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 378
BssECI CCNNGG 3 cut(s) 66, 239, 297
BssMI GATC 1 cut(s) 111
BssNI GRCGYC 2 cut(s) 43, 207
BssT1I CCWWGG 2 cut(s) 66, 297
Bst2UI CCWGG 2 cut(s) 240, 393
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 2 cut(s) 43, 207
BstC8I GCNNGC 1 cut(s) 184
BstF5I GGATG 2 cut(s) 76, 374
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 1 cut(s) 111
BstNI CCWGG 2 cut(s) 240, 393
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 3 cut(s) 197, 238, 391
BstSLI GKGCMC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 2 cut(s) 65, 124
BtrI CACGTC 1 cut(s) 255
BtsCI GGATG 2 cut(s) 76, 374
Cac8I GCNNGC 1 cut(s) 184
CaiI CAGNNNCTG 1 cut(s) 392
Cfr13I GGNCC 2 cut(s) 173, 395
CseI GACGC 2 cut(s) 32, 196
Csp6I GTAC 1 cut(s) 361
CviAII CATG 3 cut(s) 183, 233, 340
CviJI RGCY 4 cut(s) 65, 124, 227, 238
CviKI_1 RGCY 4 cut(s) 65, 124, 227, 238
CviQI GTAC 1 cut(s) 361
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 2 cut(s) 66, 297
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 2 cut(s) 173, 395
EcoRII CCWGG 2 cut(s) 238, 391
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 2 cut(s) 66, 297
ErhI CCWWGG 2 cut(s) 66, 297
FaeI CATG 3 cut(s) 186, 236, 343
FaiI YATR 9 cut(s) 57, 129, 167, 184, 234, 249, 269, 341, 366
FaqI GGGAC 2 cut(s) 194, 256
FatI CATG 3 cut(s) 182, 232, 339
FokI GGATG 2 cut(s) 83, 361
FspBI CTAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 65, 124
HapII CCGG 1 cut(s) 199
HgaI GACGC 2 cut(s) 32, 196
Hin1I GRCGYC 2 cut(s) 43, 207
Hin1II CATG 3 cut(s) 186, 236, 343
HinfI GANTC 2 cut(s) 83, 244
HpaII CCGG 1 cut(s) 199
HphI GGTGA 4 cut(s) 113, 187, 286, 319
Hpy166II GTNNAC 2 cut(s) 163, 304
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 3 cut(s) 7, 80, 386
Hpy8I GTNNAC 2 cut(s) 163, 304
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 254
Hsp92I GRCGYC 2 cut(s) 43, 207
Hsp92II CATG 3 cut(s) 186, 236, 343
Kzo9I GATC 1 cut(s) 111
LpnPI CCDG 8 cut(s) 47, 212, 225, 252, 378, 391, 399, 405
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 15, 137
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 5 cut(s) 22, 121, 328, 338, 346
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 6 cut(s) 96, 131, 261, 278, 319, 335
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 2 cut(s) 164, 341
MroXI GAANNNNTTC 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 3 cut(s) 199, 240, 393
MvaI CCWGG 2 cut(s) 240, 393
NciI CCSGG 1 cut(s) 199
NdeII GATC 1 cut(s) 111
NlaIII CATG 3 cut(s) 186, 236, 343
NspI RCATGY 1 cut(s) 186
OliI CACNNNNGTG 1 cut(s) 299
PaeI GCATGC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 83
PflMI CCANNNNNTGG 2 cut(s) 39, 392
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 238, 391
PspGI CCWGG 2 cut(s) 238, 391
PspPI GGNCC 2 cut(s) 173, 395
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 299
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 2 cut(s) 173, 395
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 3 cut(s) 199, 240, 393
SduI GDGCHC 1 cut(s) 165
SetI ASST 6 cut(s) 175, 229, 257, 288, 303, 394
SfaNI GCATC 1 cut(s) 360
SinI GGWCC 2 cut(s) 173, 395
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SphI GCATGC 1 cut(s) 186
Sse9I AATT 6 cut(s) 96, 131, 261, 278, 319, 335
SsiI CCGC 1 cut(s) 398
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 197, 238, 391
StyI CCWWGG 2 cut(s) 66, 297
TaaI ACNGT 1 cut(s) 21
TaiI ACGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 357
TasI AATT 6 cut(s) 96, 131, 261, 278, 319, 335
TfiI GAWTC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 87, 144, 328
Van91I CCANNNNNTGG 2 cut(s) 39, 392
VneI GTGCAC 1 cut(s) 161
VpaK11BI GGWCC 2 cut(s) 173, 395
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.