RchiOBHm_Chr2g0090141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000213
Physical Location & Seq
Reverse (-)
4097092 .. 4098641
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46539

Sequence Viewer

Length: 480 bp
ATGTGCCAACGCCGCCCTTTTCCCTTCTGGCACAAAACTCTAGTCCTTGACCTGCCGGAGGATGACAAGAAGAAGTTACTGTTTGCCTATACTAATGATCAGCGTCTAGGAGTTTATATTCTGTCCTTGGATGAAAATCAAGAGTCTATCACACAAATTGGTGATTGGAAGATCCCTTCGTGGCCTTATGAATTTGGTTACTTATCAGCATTTAGTATTGTGCACGTAGGAGGTCAGAAAGCATGCTTTGTTATCACCCGGTTGGGCGTCCCAAGTGAATACAAAGCTGAATATGAGCCTGGGACTCATAAGACGTGGGGAATTGCCATACCGTTTCAATTTGACCTTGATATCACCAAGGTGGACAAGGACAAGAAGAATTGTTTGACCCTCCAATTCATGTCTCTTCGCATCTTCGAGTACCATACCAACCCATCCAGTTTTCCTGAACCTGGACCGGTTGGTTGCTTTGTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.39

Weight (kDa)

6.07

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 60
AciI CCGC 1 cut(s) 13
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 2 cut(s) 58, 452
AgeI ACCGGT 1 cut(s) 457
AgsI TTSAA 1 cut(s) 338
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 2 cut(s) 298, 451
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 408
Alw44I GTGCAC 1 cut(s) 221
AlwI GGATC 1 cut(s) 166
AoxI GGCC 1 cut(s) 182
ApaLI GTGCAC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 191
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AsiGI ACCGGT 1 cut(s) 457
AspS9I GGNCC 1 cut(s) 455
AsuC2I CCSGG 1 cut(s) 259
AsuHPI GGTGA 3 cut(s) 173, 247, 346
AvaII GGWCC 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BccI CCATC 1 cut(s) 442
BciT130I CCWGG 2 cut(s) 300, 453
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 2 cut(s) 41, 107
BfuAI ACCTGC 1 cut(s) 60
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 3 cut(s) 259, 300, 453
Bme18I GGWCC 1 cut(s) 455
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 455
BmrFI CCNGG 3 cut(s) 259, 300, 453
BmsI GCATC 1 cut(s) 420
BpuMI CCSGG 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 126, 299, 357
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 452
Bse118I RCCGGY 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 438
Bse8I GATNNNNATC 1 cut(s) 135
BseBI CCWGG 2 cut(s) 300, 453
BseDI CCNNGG 3 cut(s) 126, 299, 357
BseGI GGATG 3 cut(s) 67, 136, 434
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 58, 452
BseNI ACTGG 1 cut(s) 438
BseSI GKGCMC 1 cut(s) 225
BshFI GGCC 1 cut(s) 184
BshTI ACCGGT 1 cut(s) 457
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 3 cut(s) 56, 259, 458
BslFI GGGAC 2 cut(s) 254, 316
BslI CCNNNNNNNGG 2 cut(s) 58, 452
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 2 cut(s) 254, 316
BsnI GGCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 2 cut(s) 97, 171
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 60
BspPI GGATC 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 457
BsrI ACTGG 1 cut(s) 438
BssAI RCCGGY 1 cut(s) 457
BssECI CCNNGG 3 cut(s) 126, 299, 357
BssMI GATC 2 cut(s) 97, 171
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 126, 357
Bst2UI CCWGG 2 cut(s) 300, 453
Bst4CI ACNGT 2 cut(s) 81, 333
Bst6I CTCTTC 1 cut(s) 411
BstACI GRCGYC 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 244
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 3 cut(s) 67, 136, 434
BstKTI GATC 2 cut(s) 100, 174
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 2 cut(s) 97, 171
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 2 cut(s) 300, 453
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 3 cut(s) 257, 298, 451
BstSLI GKGCMC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BsuRI GGCC 1 cut(s) 184
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 3 cut(s) 67, 136, 434
BveI ACCTGC 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 244
Cfr10I RCCGGY 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 455
CseI GACGC 2 cut(s) 92, 256
Csp6I GTAC 1 cut(s) 421
CspAI ACCGGT 1 cut(s) 457
CviAII CATG 2 cut(s) 243, 400
CviJI RGCY 3 cut(s) 184, 287, 298
CviKI_1 RGCY 3 cut(s) 184, 287, 298
CviQI GTAC 1 cut(s) 421
DpnI GATC 2 cut(s) 99, 173
DpnII GATC 2 cut(s) 97, 171
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 2 cut(s) 126, 357
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 455
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 298, 451
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 126, 357
ErhI CCWWGG 2 cut(s) 126, 357
FaeI CATG 2 cut(s) 246, 403
FaiI YATR 9 cut(s) 90, 117, 189, 244, 294, 309, 329, 401, 426
FaqI GGGAC 2 cut(s) 254, 316
FatI CATG 2 cut(s) 242, 399
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 3 cut(s) 74, 143, 421
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 2 cut(s) 41, 107
GluI GCNGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 184
HapII CCGG 3 cut(s) 56, 259, 458
HgaI GACGC 2 cut(s) 92, 256
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 2 cut(s) 246, 403
HinfI GANTC 2 cut(s) 143, 304
HpaII CCGG 3 cut(s) 56, 259, 458
HphI GGTGA 3 cut(s) 173, 247, 346
Hpy166II GTNNAC 2 cut(s) 223, 364
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 140, 446
Hpy8I GTNNAC 2 cut(s) 223, 364
HpyAV CCTTC 2 cut(s) 34, 186
HpyCH4III ACNGT 2 cut(s) 81, 333
HpyCH4IV ACGT 2 cut(s) 225, 314
HpyCH4V TGCA 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpySE526I ACGT 2 cut(s) 225, 314
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 2 cut(s) 246, 403
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 2 cut(s) 97, 171
LweI GCATC 1 cut(s) 420
MaeI CTAG 2 cut(s) 41, 107
MaeII ACGT 2 cut(s) 225, 314
MaeIII GTNAC 2 cut(s) 75, 197
MalI GATC 2 cut(s) 99, 173
MboI GATC 2 cut(s) 97, 171
MboII GAAGA 5 cut(s) 82, 181, 388, 398, 406
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 6 cut(s) 156, 191, 321, 338, 379, 395
MlyI GAGTC 2 cut(s) 152, 298
MnlI CCTC 3 cut(s) 52, 224, 401
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 3 cut(s) 56, 259, 458
MspR9I CCNGG 3 cut(s) 259, 300, 453
MvaI CCWGG 2 cut(s) 300, 453
MwoI GCNNNNNNNGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 259
NdeII GATC 2 cut(s) 97, 171
NlaIII CATG 2 cut(s) 246, 403
NspI RCATGY 1 cut(s) 246
OliI CACNNNNGTG 1 cut(s) 359
PaeI GCATGC 1 cut(s) 246
PinAI ACCGGT 1 cut(s) 457
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 2 cut(s) 151, 298
PpsI GAGTC 2 cut(s) 151, 298
Ppu21I YACGTR 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 298, 451
PspGI CCWGG 2 cut(s) 298, 451
PspPI GGNCC 1 cut(s) 455
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
RseI CAYNNNNRTG 1 cut(s) 359
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 2 cut(s) 97, 171
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 2 cut(s) 152, 298
ScrFI CCNGG 3 cut(s) 259, 300, 453
SduI GDGCHC 1 cut(s) 225
SetI ASST 8 cut(s) 54, 228, 235, 289, 317, 348, 363, 454
SfaNI GCATC 1 cut(s) 420
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 359
SphI GCATGC 1 cut(s) 246
Sse9I AATT 6 cut(s) 156, 191, 321, 338, 379, 395
SsiI CCGC 1 cut(s) 13
SspMI CTAG 2 cut(s) 41, 107
StyD4I CCNGG 3 cut(s) 257, 298, 451
StyI CCWWGG 2 cut(s) 126, 357
TaaI ACNGT 2 cut(s) 81, 333
TaiI ACGT 2 cut(s) 228, 317
TaqI TCGA 1 cut(s) 417
TasI AATT 6 cut(s) 156, 191, 321, 338, 379, 395
TauI GCSGC 1 cut(s) 15
TspDTI ATGAA 3 cut(s) 147, 204, 388
VneI GTGCAC 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 455
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 1 cut(s) 191
XceI RCATGY 1 cut(s) 246
XspI CTAG 2 cut(s) 41, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.