RchiOBHm_Chr1g0329851

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000213
Physical Location & Seq
Forward (+)
19588894 .. 19590356
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55911

Sequence Viewer

Length: 741 bp
ATGACCCAAAAATCGTTAGAAAGCTATGGTGAAGAAGAAGAAGGGCGGCATCTGCACAAGCATCGAAAGATCAGGGACAGTGAAGAAGAAATGGATTTTCGGGTGAAGATTCAGAGGACAGGCATAAGCATGACCAAAAAATCGATTGAGAAGACTAGTGAAGAAGAAGAAGAAGGTAGTAAGTCCAAGTCCAAGTCCCTTTACATCTGTAGCTTTGAACGTAACCAGTCGATTGATAAGAGTAAGAACTGGGGTGCTTATGCTGTCCGCGCCGCCGATCTGACCCATTTGTATGATTCCAATTCCAAATTGGAATTACGGCAAGTGGGTTACAGGGCCGGCGAAGACCTCCCCGCTGCCGGAGGCTGTGGTGTTTTGGGCTCCCGAATCCTTTTCGCCAGCGGCTTGAAACACAGCTTTGGACCTCGTGGTCCACCTTACGGACCAGAAGCCAGCACACGAGCTTATGCCTTTGATACCTCCAACGACACCCCCGACATAGTCGACATGGATGAGAGTTTACACGAGGGCAAACATATGCCTTTGACGCTGGAGGTCGCCGGCAAGCTCTATGTTCTCTCCGCTAAGTGGTATGGTTTAACTTTAAATTCATTTGAGGTTTTTGACCCCATTCACAGGAATTGGTCACTTCTCCCGGAATTTCCAAATTGTGGTCAATTCCTCTCTTGTGCAATTGCTGGCACCAAGCTTTTCGTCTCCAATGAAAGTCTGCTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

27.53

Weight (kDa)

5.94

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 701
AccB7I CCANNNNNTGG 1 cut(s) 671
AccI GTMKAC 1 cut(s) 504
AccII CGCG 1 cut(s) 270
AciI CCGC 6 cut(s) 46, 268, 273, 354, 402, 582
AcsI RAATTY 2 cut(s) 607, 659
AfiI CCNNNNNNNGG 5 cut(s) 359, 440, 588, 636, 671
AgsI TTSAA 2 cut(s) 218, 409
AhlI ACTAGT 1 cut(s) 155
AluBI AGCT 6 cut(s) 24, 213, 417, 464, 568, 709
AluI AGCT 6 cut(s) 24, 213, 417, 464, 568, 709
Alw26I GTCTC 1 cut(s) 721
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 2 cut(s) 356, 733
ApoI RAATTY 2 cut(s) 607, 659
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 4 cut(s) 336, 422, 431, 443
AsuC2I CCSGG 1 cut(s) 656
AsuHPI GGTGA 2 cut(s) 41, 115
AvaII GGWCC 3 cut(s) 422, 431, 443
BanI GGYRCC 1 cut(s) 701
BanII GRGCYC 1 cut(s) 383
BauI CACGAG 3 cut(s) 426, 459, 524
BbsI GAAGAC 2 cut(s) 158, 351
BbvI GCAGC 2 cut(s) 343, 720
BceAI ACGGC 1 cut(s) 335
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BcnI CCSGG 1 cut(s) 656
BcoDI GTCTC 1 cut(s) 721
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 208
BisI GCNGC 5 cut(s) 47, 273, 357, 403, 734
BlsI GCNGC 5 cut(s) 48, 274, 358, 404, 735
Bme1390I CCNGG 1 cut(s) 656
Bme18I GGWCC 3 cut(s) 422, 431, 443
BmgT120I GGNCC 4 cut(s) 336, 422, 431, 443
BmiI GGNNCC 2 cut(s) 382, 703
BmrFI CCNGG 1 cut(s) 656
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 2 cut(s) 58, 70
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 2 cut(s) 158, 351
BpmI CTGGAG 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 656
Bsa29I ATCGAT 1 cut(s) 143
Bsc4I CCNNNNNNNGG 5 cut(s) 359, 440, 588, 636, 671
Bse118I RCCGGY 2 cut(s) 338, 560
Bse1I ACTGG 2 cut(s) 226, 254
BseCI ATCGAT 1 cut(s) 143
BseGI GGATG 1 cut(s) 517
BseLI CCNNNNNNNGG 5 cut(s) 359, 440, 588, 636, 671
BseNI ACTGG 2 cut(s) 226, 254
BseXI GCAGC 2 cut(s) 343, 720
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 338
BshNI GGYRCC 1 cut(s) 701
BshVI ATCGAT 1 cut(s) 143
BsiSI CCGG 4 cut(s) 339, 360, 561, 656
BslFI GGGAC 2 cut(s) 89, 181
BslI CCNNNNNNNGG 5 cut(s) 359, 440, 588, 636, 671
BsmAI GTCTC 1 cut(s) 721
BsmBI CGTCTC 1 cut(s) 721
BsmFI GGGAC 2 cut(s) 89, 181
BsnI GGCC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 383
Bsp143I GATC 2 cut(s) 69, 277
BspACI CCGC 6 cut(s) 46, 268, 273, 354, 402, 582
BspANI GGCC 1 cut(s) 338
BspDI ATCGAT 1 cut(s) 143
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 382, 703
BspT107I GGYRCC 1 cut(s) 701
BsrFI RCCGGY 2 cut(s) 338, 560
BsrI ACTGG 2 cut(s) 226, 254
BssAI RCCGGY 2 cut(s) 338, 560
BssMI GATC 2 cut(s) 69, 277
BssSI CACGAG 3 cut(s) 426, 459, 524
Bst2BI CACGAG 3 cut(s) 426, 459, 524
Bst4CI ACNGT 1 cut(s) 80
BstC8I GCNNGC 6 cut(s) 340, 400, 454, 562, 566, 700
BstDEI CTNAG 1 cut(s) 585
BstF5I GGATG 1 cut(s) 517
BstFNI CGCG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 2 cut(s) 72, 280
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 2 cut(s) 69, 277
BstMWI GCNNNNNNNGC 3 cut(s) 52, 269, 547
BstSCI CCNGG 1 cut(s) 654
BstSFI CTRYAG 1 cut(s) 208
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 343, 720
BstV2I GAAGAC 2 cut(s) 158, 351
Bsu15I ATCGAT 1 cut(s) 143
BsuRI GGCC 1 cut(s) 338
BsuTUI ATCGAT 1 cut(s) 143
BtsCI GGATG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 6 cut(s) 340, 400, 454, 562, 566, 700
CfoI GCGC 1 cut(s) 272
Cfr10I RCCGGY 2 cut(s) 338, 560
Cfr13I GGNCC 4 cut(s) 336, 422, 431, 443
ClaI ATCGAT 1 cut(s) 143
CseI GACGC 1 cut(s) 556
CviAII CATG 2 cut(s) 130, 508
DdeI CTNAG 1 cut(s) 585
DpnI GATC 2 cut(s) 71, 279
DpnII GATC 2 cut(s) 69, 277
DraI TTTAAA 1 cut(s) 606
DrdI GACNNNNNNGTC 1 cut(s) 429
DseDI GACNNNNNNGTC 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 383
Eco47I GGWCC 3 cut(s) 422, 431, 443
EcoT38I GRGCYC 1 cut(s) 383
Esp3I CGTCTC 1 cut(s) 721
FaeI CATG 2 cut(s) 133, 511
FaqI GGGAC 2 cut(s) 89, 181
FatI CATG 2 cut(s) 129, 507
FauI CCCGC 1 cut(s) 361
FauNDI CATATG 1 cut(s) 537
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 5 cut(s) 47, 273, 357, 403, 734
FokI GGATG 1 cut(s) 524
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 5 cut(s) 47, 273, 357, 403, 734
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 271
GluI GCNGC 5 cut(s) 47, 273, 357, 403, 734
GsuI CTGGAG 1 cut(s) 572
HaeIII GGCC 1 cut(s) 338
HapII CCGG 4 cut(s) 339, 360, 561, 656
HgaI GACGC 1 cut(s) 556
HhaI GCGC 1 cut(s) 272
Hin1II CATG 2 cut(s) 133, 511
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 3 cut(s) 109, 296, 387
HpaII CCGG 4 cut(s) 339, 360, 561, 656
HphI GGTGA 2 cut(s) 41, 115
Hpy166II GTNNAC 3 cut(s) 434, 505, 521
Hpy188I TCNGA 2 cut(s) 114, 282
Hpy188III TCNNGA 1 cut(s) 384
Hpy8I GTNNAC 3 cut(s) 434, 505, 521
HpyAV CCTTC 2 cut(s) 35, 167
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 55, 692
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 269, 547
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 2 cut(s) 133, 511
HspAI GCGC 1 cut(s) 270
KroI GCCGGC 2 cut(s) 338, 560
KroNI GCCGGC 2 cut(s) 340, 562
Kzo9I GATC 2 cut(s) 69, 277
LmnI GCTCC 1 cut(s) 386
Lsp1109I GCAGC 2 cut(s) 343, 720
LweI GCATC 2 cut(s) 58, 70
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 3 cut(s) 221, 329, 645
MalI GATC 2 cut(s) 71, 279
MboI GATC 2 cut(s) 69, 277
MfeI CAATTG 1 cut(s) 693
MhlI GDGCHC 1 cut(s) 383
MluCI AATT 9 cut(s) 301, 308, 314, 607, 640, 659, 667, 677, 693
MmeI TCCRAC 1 cut(s) 507
MnlI CCTC 9 cut(s) 108, 356, 359, 435, 490, 520, 547, 610, 692
MroNI GCCGGC 2 cut(s) 338, 560
MseI TTAA 2 cut(s) 599, 605
MslI CAYNNNNRTG 2 cut(s) 128, 291
MspA1I CMGCKG 2 cut(s) 356, 402
MspI CCGG 4 cut(s) 339, 360, 561, 656
MspR9I CCNGG 1 cut(s) 656
MunI CAATTG 1 cut(s) 693
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 3 cut(s) 52, 269, 547
NaeI GCCGGC 2 cut(s) 340, 562
NciI CCSGG 1 cut(s) 656
NdeI CATATG 1 cut(s) 537
NdeII GATC 2 cut(s) 69, 277
NgoMIV GCCGGC 2 cut(s) 338, 560
NlaIII CATG 2 cut(s) 133, 511
NlaIV GGNNCC 2 cut(s) 382, 703
NmuCI GTSAC 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PdiI GCCGGC 2 cut(s) 340, 562
PfeI GAWTC 3 cut(s) 109, 296, 387
PflFI GACNNNGTC 1 cut(s) 500
PflMI CCANNNNNTGG 1 cut(s) 671
PfoI TCCNGGA 1 cut(s) 654
PkrI GCNGC 5 cut(s) 48, 274, 358, 404, 735
PspN4I GGNNCC 2 cut(s) 382, 703
PspPI GGNCC 4 cut(s) 336, 422, 431, 443
PsyI GACNNNGTC 1 cut(s) 500
RseI CAYNNNNRTG 2 cut(s) 128, 291
SalI GTCGAC 1 cut(s) 503
SaqAI TTAA 2 cut(s) 599, 605
SatI GCNGC 5 cut(s) 47, 273, 357, 403, 734
Sau3AI GATC 2 cut(s) 69, 277
Sau96I GGNCC 4 cut(s) 336, 422, 431, 443
ScrFI CCNGG 1 cut(s) 656
SduI GDGCHC 1 cut(s) 383
SfaNI GCATC 2 cut(s) 58, 70
SfcI CTRYAG 1 cut(s) 208
SinI GGWCC 3 cut(s) 422, 431, 443
SmiMI CAYNNNNRTG 2 cut(s) 128, 291
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 9 cut(s) 301, 308, 314, 607, 640, 659, 667, 677, 693
SsiI CCGC 6 cut(s) 46, 268, 273, 354, 402, 582
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 654
TaaI ACNGT 1 cut(s) 80
TaiI ACGT 1 cut(s) 223
TaqI TCGA 4 cut(s) 64, 143, 230, 504
TasI AATT 9 cut(s) 301, 308, 314, 607, 640, 659, 667, 677, 693
TauI GCSGC 3 cut(s) 49, 275, 405
TfiI GAWTC 3 cut(s) 109, 296, 387
Tru1I TTAA 2 cut(s) 599, 605
Tru9I TTAA 2 cut(s) 599, 605
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 645
TseI GCWGC 2 cut(s) 356, 733
Tsp45I GTSAC 1 cut(s) 645
TspDTI ATGAA 2 cut(s) 600, 738
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 1 cut(s) 85
Tth111I GACNNNGTC 1 cut(s) 500
Van91I CCANNNNNTGG 1 cut(s) 671
VpaK11BI GGWCC 3 cut(s) 422, 431, 443
XapI RAATTY 2 cut(s) 607, 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 504
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.