Rmu_sc0019583.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019583.1
OG0000213
Physical Location & Seq
Forward (+)
5 .. 553
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019583.1_g000001.1.cds

Sequence Viewer

Length: 549 bp
atgaaaaatgtccagtgttctgctttgacgtcgcccacccagacagagaatggagactggtctctactatgtgccaaacgccgcccatttcccttctggcacaaaactctagtccttgacctgccggaggatgacaagaagaagttgctatttgcctacaccaatgattggcgtctaggagtttatattctgtccttggatgaaaatcaagaatctatcacacaaattggtgattggaagatcccttcgtggacttatgaatttggttacttatcagcatttagtattgtgcacataggaggtcagaaagcatgctttgttatcacccggttgggcgtcccaagtgaatacaaagttgaacatgagcctgggactcataagacgtggggaattgccataccatttcaatttgaccttgatatcaccaaggtggacaaggacaagaagaattgtttcaccctccaattcatgtctcttcgcatcttcgagtaccataccaacccatccagttttcctgaacctggaccggttggttgccttttgctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.92

Weight (kDa)

6.2

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 32
Acc36I ACCTGC 1 cut(s) 129
AccB7I CCANNNNNTGG 1 cut(s) 168
AciI CCGC 1 cut(s) 82
AclWI GGATC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 260
AcyI GRCGYC 3 cut(s) 29, 172, 336
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 3 cut(s) 127, 168, 521
AgeI ACCGGT 1 cut(s) 526
AgsI TTSAA 2 cut(s) 359, 407
AjiI CACGTC 1 cut(s) 384
AjnI CCWGG 2 cut(s) 367, 520
AleI CACNNNNGTG 1 cut(s) 428
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 3 cut(s) 48, 66, 477
Alw44I GTGCAC 1 cut(s) 290
AlwI GGATC 1 cut(s) 235
ApaLI GTGCAC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 260
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
AsiGI ACCGGT 1 cut(s) 526
Asp700I GAANNNNTTC 1 cut(s) 452
AspS9I GGNCC 1 cut(s) 524
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 4 cut(s) 242, 316, 415, 448
AvaII GGWCC 1 cut(s) 524
BaeGI GKGCMC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 294
BccI CCATC 1 cut(s) 511
BciT130I CCWGG 2 cut(s) 369, 522
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 3 cut(s) 48, 66, 477
BfaI CTAG 2 cut(s) 110, 176
BfuAI ACCTGC 1 cut(s) 129
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme1390I CCNGG 3 cut(s) 328, 369, 522
Bme18I GGWCC 1 cut(s) 524
BmgBI CACGTC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 524
BmrFI CCNGG 3 cut(s) 328, 369, 522
BmsI GCATC 1 cut(s) 489
BpuMI CCSGG 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 3 cut(s) 29, 172, 336
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 195, 368, 426
BsaWI WCCGGW 1 cut(s) 526
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 168, 521
Bse118I RCCGGY 1 cut(s) 526
Bse1I ACTGG 3 cut(s) 13, 62, 507
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 2 cut(s) 369, 522
BseDI CCNNGG 3 cut(s) 195, 368, 426
BseGI GGATG 3 cut(s) 136, 205, 503
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 3 cut(s) 127, 168, 521
BseNI ACTGG 3 cut(s) 13, 62, 507
BseSI GKGCMC 1 cut(s) 294
BshTI ACCGGT 1 cut(s) 526
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 3 cut(s) 125, 328, 527
BslFI GGGAC 2 cut(s) 323, 385
BslI CCNNNNNNNGG 3 cut(s) 127, 168, 521
BsmAI GTCTC 3 cut(s) 48, 66, 477
BsmFI GGGAC 2 cut(s) 323, 385
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 129
BspPI GGATC 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 526
BsrI ACTGG 3 cut(s) 13, 62, 507
BssAI RCCGGY 1 cut(s) 526
BssECI CCNNGG 3 cut(s) 195, 368, 426
BssMI GATC 1 cut(s) 240
BssNI GRCGYC 3 cut(s) 29, 172, 336
BssT1I CCWWGG 2 cut(s) 195, 426
Bst2UI CCWGG 2 cut(s) 369, 522
Bst6I CTCTTC 1 cut(s) 480
BstACI GRCGYC 3 cut(s) 29, 172, 336
BstC8I GCNNGC 1 cut(s) 313
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 3 cut(s) 136, 205, 503
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 3 cut(s) 48, 66, 477
BstMBI GATC 1 cut(s) 240
BstNI CCWGG 2 cut(s) 369, 522
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 3 cut(s) 326, 367, 520
BstSLI GKGCMC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BtrI CACGTC 1 cut(s) 384
BtsCI GGATG 3 cut(s) 136, 205, 503
BtsIMutI CAGTG 1 cut(s) 20
BveI ACCTGC 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 524
CseI GACGC 2 cut(s) 161, 325
Csp6I GTAC 1 cut(s) 490
CspAI ACCGGT 1 cut(s) 526
CviAII CATG 3 cut(s) 312, 362, 469
CviJI RGCY 1 cut(s) 367
CviKI_1 RGCY 1 cut(s) 367
CviQI GTAC 1 cut(s) 490
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 195, 426
Eco31I GGTCTC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 524
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 367, 520
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 195, 426
ErhI CCWWGG 2 cut(s) 195, 426
FaeI CATG 3 cut(s) 315, 365, 472
FaqI GGGAC 2 cut(s) 323, 385
FatI CATG 3 cut(s) 311, 361, 468
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 3 cut(s) 143, 212, 490
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 2 cut(s) 110, 176
GluI GCNGC 1 cut(s) 82
HapII CCGG 3 cut(s) 125, 328, 527
HgaI GACGC 2 cut(s) 161, 325
Hin1I GRCGYC 3 cut(s) 29, 172, 336
Hin1II CATG 3 cut(s) 315, 365, 472
HinfI GANTC 2 cut(s) 212, 373
HpaII CCGG 3 cut(s) 125, 328, 527
HphI GGTGA 4 cut(s) 242, 316, 415, 448
Hpy166II GTNNAC 3 cut(s) 252, 292, 433
Hpy188I TCNGA 2 cut(s) 306, 548
Hpy188III TCNNGA 2 cut(s) 209, 515
Hpy8I GTNNAC 3 cut(s) 252, 292, 433
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 103, 255
HpyCH4IV ACGT 2 cut(s) 29, 383
HpyCH4V TGCA 1 cut(s) 292
HpySE526I ACGT 2 cut(s) 29, 383
Hsp92I GRCGYC 3 cut(s) 29, 172, 336
Hsp92II CATG 3 cut(s) 315, 365, 472
Kzo9I GATC 1 cut(s) 240
LweI GCATC 1 cut(s) 489
MaeI CTAG 2 cut(s) 110, 176
MaeII ACGT 2 cut(s) 29, 383
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 5 cut(s) 151, 250, 457, 467, 475
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 6 cut(s) 225, 260, 390, 407, 448, 464
MlyI GAGTC 1 cut(s) 367
MnlI CCTC 3 cut(s) 121, 293, 470
MroXI GAANNNNTTC 1 cut(s) 452
MslI CAYNNNNRTG 1 cut(s) 428
MspI CCGG 3 cut(s) 125, 328, 527
MspR9I CCNGG 3 cut(s) 328, 369, 522
MvaI CCWGG 2 cut(s) 369, 522
NciI CCSGG 1 cut(s) 328
NdeII GATC 1 cut(s) 240
NlaIII CATG 3 cut(s) 315, 365, 472
NspI RCATGY 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 428
PaeI GCATGC 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 168
PinAI ACCGGT 1 cut(s) 526
PkrI GCNGC 1 cut(s) 83
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 367, 520
PspGI CCWGG 2 cut(s) 367, 520
PspPI GGNCC 1 cut(s) 524
PsuI RGATCY 1 cut(s) 240
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 428
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 1 cut(s) 524
SchI GAGTC 1 cut(s) 367
ScrFI CCNGG 3 cut(s) 328, 369, 522
SduI GDGCHC 1 cut(s) 294
SetI ASST 7 cut(s) 32, 123, 304, 386, 417, 432, 523
SfaNI GCATC 1 cut(s) 489
SinI GGWCC 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 428
SphI GCATGC 1 cut(s) 315
Sse9I AATT 6 cut(s) 225, 260, 390, 407, 448, 464
SsiI CCGC 1 cut(s) 82
SspMI CTAG 2 cut(s) 110, 176
StyD4I CCNGG 3 cut(s) 326, 367, 520
StyI CCWWGG 2 cut(s) 195, 426
TaiI ACGT 2 cut(s) 32, 386
TaqI TCGA 1 cut(s) 486
TasI AATT 6 cut(s) 225, 260, 390, 407, 448, 464
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 1 cut(s) 20
TspDTI ATGAA 4 cut(s) 17, 216, 273, 457
TspRI CASTG 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 168
VneI GTGCAC 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 524
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 315
XcmI CCANNNNNNNNNTGG 2 cut(s) 47, 93
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 2 cut(s) 110, 176
ZraI GACGTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.