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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 794, 2021 |
| Acc36I | ACCTGC | 3 cut(s) | 794, 1873, 2021 |
| AccB1I | GGYRCC | 4 cut(s) | 1479, 1866, 2033, 2057 |
| AccI | GTMKAC | 2 cut(s) | 1447, 1699 |
| AciI | CCGC | 8 cut(s) | 350, 658, 956, 1477, 1693, 1832, 1949, 2038 |
| AclWI | GGATC | 7 cut(s) | 356, 369, 1231, 1464, 1604, 1745, 1758 |
| AcoI | YGGCCR | 1 cut(s) | 1165 |
| AcsI | RAATTY | 3 cut(s) | 302, 1432, 1844 |
| AcuI | CTGAAG | 3 cut(s) | 216, 276, 701 |
| AcvI | CACGTG | 1 cut(s) | 1415 |
| AcyI | GRCGYC | 2 cut(s) | 1867, 1957 |
| AdeI | CACNNNGTG | 1 cut(s) | 2099 |
| AfaI | GTAC | 6 cut(s) | 722, 913, 950, 1159, 1588, 1924 |
| AfeI | AGCGCT | 1 cut(s) | 2140 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 427, 1489, 1760 |
| AflII | CTTAAG | 2 cut(s) | 203, 1153 |
| AflIII | ACRYGT | 2 cut(s) | 18, 1412 |
| AgsI | TTSAA | 5 cut(s) | 131, 156, 1564, 1690, 1889 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 329 |
| AjiI | CACGTC | 1 cut(s) | 21 |
| AleI | CACNNNNGTG | 1 cut(s) | 1915 |
| AluBI | AGCT | 7 cut(s) | 572, 776, 875, 1223, 1732, 1840, 1987 |
| AluI | AGCT | 7 cut(s) | 572, 776, 875, 1223, 1732, 1840, 1987 |
| Alw21I | GWGCWC | 3 cut(s) | 151, 681, 2134 |
| Alw26I | GTCTC | 1 cut(s) | 39 |
| AlwI | GGATC | 7 cut(s) | 356, 369, 1231, 1464, 1604, 1745, 1758 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 809 |
| Ama87I | CYCGRG | 2 cut(s) | 525, 2142 |
| Aor51HI | AGCGCT | 1 cut(s) | 2140 |
| AoxI | GGCC | 1 cut(s) | 1165 |
| ApeKI | GCWGC | 4 cut(s) | 655, 809, 1931, 2084 |
| ApoI | RAATTY | 3 cut(s) | 302, 1432, 1844 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 190, 1093 |
| AspLEI | GCGC | 2 cut(s) | 1869, 2141 |
| AspS9I | GGNCC | 1 cut(s) | 993 |
| AsuC2I | CCSGG | 4 cut(s) | 33, 142, 560, 1194 |
| AsuHPI | GGTGA | 2 cut(s) | 554, 562 |
| AvaI | CYCGRG | 2 cut(s) | 525, 2142 |
| AvaII | GGWCC | 1 cut(s) | 993 |
| AxyI | CCTNAGG | 1 cut(s) | 294 |
| BaeGI | GKGCMC | 2 cut(s) | 1747, 2038 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 90, 123 |
| BalI | TGGCCA | 1 cut(s) | 1167 |
| BamHI | GGATCC | 2 cut(s) | 361, 1750 |
| BanI | GGYRCC | 4 cut(s) | 1479, 1866, 2033, 2057 |
| BanII | GRGCYC | 1 cut(s) | 1176 |
| BauI | CACGAG | 1 cut(s) | 240 |
| BbrPI | CACGTG | 1 cut(s) | 1415 |
| Bbv12I | GWGCWC | 3 cut(s) | 151, 681, 2134 |
| BbvI | GCAGC | 4 cut(s) | 667, 796, 1918, 2071 |
| BccI | CCATC | 3 cut(s) | 526, 1353, 1661 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1802, 1836 |
| BciVI | GTATCC | 3 cut(s) | 39, 154, 1200 |
| BclI | TGATCA | 1 cut(s) | 1390 |
| BcnI | CCSGG | 4 cut(s) | 33, 142, 560, 1194 |
| BcoDI | GTCTC | 1 cut(s) | 39 |
| BfaI | CTAG | 4 cut(s) | 840, 1182, 1220, 2076 |
| BfmI | CTRYAG | 2 cut(s) | 653, 876 |
| BfoI | RGCGCY | 2 cut(s) | 1870, 2142 |
| BfrI | CTTAAG | 2 cut(s) | 203, 1153 |
| BfuAI | ACCTGC | 3 cut(s) | 794, 1873, 2021 |
| BfuI | GTATCC | 3 cut(s) | 39, 154, 1200 |
| BglII | AGATCT | 1 cut(s) | 259 |
| BisI | GCNGC | 6 cut(s) | 656, 810, 1478, 1932, 1950, 2085 |
| BlsI | GCNGC | 6 cut(s) | 657, 811, 1479, 1933, 1951, 2086 |
| Bme1390I | CCNGG | 4 cut(s) | 33, 142, 560, 1194 |
| Bme18I | GGWCC | 1 cut(s) | 993 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 329 |
| BmeT110I | CYCGRG | 2 cut(s) | 525, 2142 |
| BmgBI | CACGTC | 1 cut(s) | 21 |
| BmgT120I | GGNCC | 1 cut(s) | 993 |
| BmiI | GGNNCC | 7 cut(s) | 363, 1481, 1509, 1752, 1868, 2035, 2059 |
| BmrFI | CCNGG | 4 cut(s) | 33, 142, 560, 1194 |
| BmsI | GCATC | 6 cut(s) | 407, 454, 1329, 1534, 1614, 2185 |
| BoxI | GACNNNNGTC | 1 cut(s) | 205 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1495, 1527 |
| BpmI | CTGGAG | 3 cut(s) | 123, 476, 684 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2172 |
| BpuEI | CTTGAG | 2 cut(s) | 1319, 1670 |
| BpuMI | CCSGG | 4 cut(s) | 33, 142, 560, 1194 |
| BsaAI | YACGTR | 3 cut(s) | 1188, 1415, 1640 |
| BsaBI | GATNNNNATC | 1 cut(s) | 981 |
| BsaHI | GRCGYC | 2 cut(s) | 1867, 1957 |
| BsaJI | CCNNGG | 1 cut(s) | 1168 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1599, 1629 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 427, 1489, 1760 |
| Bse1I | ACTGG | 9 cut(s) | 106, 383, 493, 552, 1015, 1613, 1752, 1854, 2031 |
| Bse21I | CCTNAGG | 1 cut(s) | 294 |
| Bse3DI | GCAATG | 3 cut(s) | 446, 510, 892 |
| Bse8I | GATNNNNATC | 1 cut(s) | 981 |
| BseDI | CCNNGG | 1 cut(s) | 1168 |
| BseGI | GGATG | 7 cut(s) | 70, 164, 1011, 1344, 1429, 1534, 1941 |
| BseJI | GATNNNNATC | 1 cut(s) | 981 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 427, 1489, 1760 |
| BseMI | GCAATG | 3 cut(s) | 446, 510, 892 |
| BseMII | CTCAG | 4 cut(s) | 308, 1474, 2147, 2163 |
| BseNI | ACTGG | 9 cut(s) | 106, 383, 493, 552, 1015, 1613, 1752, 1854, 2031 |
| BseRI | GAGGAG | 5 cut(s) | 124, 1316, 1442, 1516, 1742 |
| BseSI | GKGCMC | 2 cut(s) | 1747, 2038 |
| BseXI | GCAGC | 4 cut(s) | 667, 796, 1918, 2071 |
| BsgI | GTGCAG | 1 cut(s) | 264 |
| BshFI | GGCC | 1 cut(s) | 1167 |
| BshNI | GGYRCC | 4 cut(s) | 1479, 1866, 2033, 2057 |
| BsiHKAI | GWGCWC | 3 cut(s) | 151, 681, 2134 |
| BsiHKCI | CYCGRG | 2 cut(s) | 525, 2142 |
| BsiSI | CCGG | 5 cut(s) | 32, 142, 560, 1194, 1993 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 427, 1489, 1760 |
| BsmAI | GTCTC | 1 cut(s) | 39 |
| BsmI | GAATGC | 1 cut(s) | 2125 |
| BsnI | GGCC | 1 cut(s) | 1167 |
| BsoBI | CYCGRG | 2 cut(s) | 525, 2142 |
| Bsp1286I | GDGCHC | 6 cut(s) | 151, 681, 1176, 1747, 2038, 2134 |
| Bsp143I | GATC | 8 cut(s) | 218, 259, 361, 1236, 1390, 1456, 1609, 1750 |
| BspACI | CCGC | 8 cut(s) | 350, 658, 956, 1477, 1693, 1832, 1949, 2038 |
| BspANI | GGCC | 1 cut(s) | 1167 |
| BspCNI | CTCAG | 4 cut(s) | 307, 1473, 2146, 2164 |
| BspLI | GGNNCC | 7 cut(s) | 363, 1481, 1509, 1752, 1868, 2035, 2059 |
| BspMAI | CTGCAG | 1 cut(s) | 657 |
| BspMI | ACCTGC | 3 cut(s) | 794, 1873, 2021 |
| BspPI | GGATC | 7 cut(s) | 356, 369, 1231, 1464, 1604, 1745, 1758 |
| BspQI | GCTCTTC | 1 cut(s) | 1830 |
| BspT107I | GGYRCC | 4 cut(s) | 1479, 1866, 2033, 2057 |
| BspTI | CTTAAG | 2 cut(s) | 203, 1153 |
| BsrDI | GCAATG | 3 cut(s) | 446, 510, 892 |
| BsrI | ACTGG | 9 cut(s) | 106, 383, 493, 552, 1015, 1613, 1752, 1854, 2031 |
| BssECI | CCNNGG | 1 cut(s) | 1168 |
| BssMI | GATC | 8 cut(s) | 218, 259, 361, 1236, 1390, 1456, 1609, 1750 |
| BssNI | GRCGYC | 2 cut(s) | 1867, 1957 |
| BssSI | CACGAG | 1 cut(s) | 240 |
| BssT1I | CCWWGG | 1 cut(s) | 1168 |
| Bst2BI | CACGAG | 1 cut(s) | 240 |
| Bst4CI | ACNGT | 6 cut(s) | 11, 27, 948, 953, 1130, 1792 |
| Bst6I | CTCTTC | 4 cut(s) | 97, 1247, 1830, 1995 |
| BstACI | GRCGYC | 2 cut(s) | 1867, 1957 |
| BstAFI | CTTAAG | 2 cut(s) | 203, 1153 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 809, 930, 1339, 2129 |
| BstBAI | YACGTR | 3 cut(s) | 1188, 1415, 1640 |
| BstC8I | GCNNGC | 5 cut(s) | 681, 837, 899, 1936, 2038 |
| BstDEI | CTNAG | 6 cut(s) | 294, 573, 1101, 1460, 2133, 2172 |
| BstF5I | GGATG | 7 cut(s) | 70, 164, 1011, 1344, 1429, 1534, 1941 |
| BstH2I | RGCGCY | 2 cut(s) | 1870, 2142 |
| BstHHI | GCGC | 2 cut(s) | 1869, 2141 |
| BstKTI | GATC | 8 cut(s) | 221, 262, 364, 1239, 1393, 1459, 1612, 1753 |
| BstMAI | GTCTC | 1 cut(s) | 39 |
| BstMBI | GATC | 8 cut(s) | 218, 259, 361, 1236, 1390, 1456, 1609, 1750 |
| BstNSI | RCATGY | 1 cut(s) | 897 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 205 |
| BstSCI | CCNGG | 4 cut(s) | 31, 140, 558, 1192 |
| BstSFI | CTRYAG | 2 cut(s) | 653, 876 |
| BstSLI | GKGCMC | 2 cut(s) | 1747, 2038 |
| BstV1I | GCAGC | 4 cut(s) | 667, 796, 1918, 2071 |
| BstX2I | RGATCY | 5 cut(s) | 259, 361, 1456, 1609, 1750 |
| BstYI | RGATCY | 5 cut(s) | 259, 361, 1456, 1609, 1750 |
| Bsu36I | CCTNAGG | 1 cut(s) | 294 |
| BsuI | GTATCC | 3 cut(s) | 39, 154, 1200 |
| BsuRI | GGCC | 1 cut(s) | 1167 |
| BtgZI | GCGATG | 1 cut(s) | 1331 |
| BtrI | CACGTC | 1 cut(s) | 21 |
| BtsCI | GGATG | 7 cut(s) | 70, 164, 1011, 1344, 1429, 1534, 1941 |
| BtsI | GCAGTG | 2 cut(s) | 1340, 1922 |
| BtsIMutI | CAGTG | 5 cut(s) | 621, 1340, 1745, 1922, 2024 |
| BveI | ACCTGC | 3 cut(s) | 794, 1873, 2021 |
| Cac8I | GCNNGC | 5 cut(s) | 681, 837, 899, 1936, 2038 |
| CaiI | CAGNNNCTG | 1 cut(s) | 809 |
| CfoI | GCGC | 2 cut(s) | 1869, 2141 |
| Cfr13I | GGNCC | 1 cut(s) | 993 |
| CseI | GACGC | 1 cut(s) | 1946 |
| Csp6I | GTAC | 6 cut(s) | 721, 912, 949, 1158, 1587, 1923 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1382, 1417 |
| CviAII | CATG | 7 cut(s) | 339, 484, 894, 930, 974, 1953, 1981 |
| CviQI | GTAC | 6 cut(s) | 721, 912, 949, 1158, 1587, 1923 |
| DdeI | CTNAG | 6 cut(s) | 294, 573, 1101, 1460, 2133, 2172 |
| DinI | GGCGCC | 1 cut(s) | 1868 |
| DpnI | GATC | 8 cut(s) | 220, 261, 363, 1238, 1392, 1458, 1611, 1752 |
| DpnII | GATC | 8 cut(s) | 218, 259, 361, 1236, 1390, 1456, 1609, 1750 |
| DraI | TTTAAA | 1 cut(s) | 172 |
| DraIII | CACNNNGTG | 1 cut(s) | 2099 |
| DriI | GACNNNNNGTC | 1 cut(s) | 329 |
| EaeI | YGGCCR | 1 cut(s) | 1165 |
| Eam1104I | CTCTTC | 4 cut(s) | 97, 1247, 1830, 1995 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 329 |
| EarI | CTCTTC | 4 cut(s) | 97, 1247, 1830, 1995 |
| Eco130I | CCWWGG | 1 cut(s) | 1168 |
| Eco24I | GRGCYC | 1 cut(s) | 1176 |
| Eco32I | GATATC | 2 cut(s) | 1009, 1471 |
| Eco47I | GGWCC | 1 cut(s) | 993 |
| Eco47III | AGCGCT | 1 cut(s) | 2140 |
| Eco57I | CTGAAG | 3 cut(s) | 216, 276, 701 |
| Eco72I | CACGTG | 1 cut(s) | 1415 |
| Eco81I | CCTNAGG | 1 cut(s) | 294 |
| Eco88I | CYCGRG | 2 cut(s) | 525, 2142 |
| EcoRV | GATATC | 2 cut(s) | 1009, 1471 |
| EcoT14I | CCWWGG | 1 cut(s) | 1168 |
| EcoT22I | ATGCAT | 1 cut(s) | 400 |
| EcoT38I | GRGCYC | 1 cut(s) | 1176 |
| EgeI | GGCGCC | 1 cut(s) | 1868 |
| EheI | GGCGCC | 1 cut(s) | 1868 |
| ErhI | CCWWGG | 1 cut(s) | 1168 |
| FaeI | CATG | 7 cut(s) | 342, 487, 897, 933, 977, 1956, 1984 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 566, 598 |
| FatI | CATG | 7 cut(s) | 338, 483, 893, 929, 973, 1952, 1980 |
| FauI | CCCGC | 1 cut(s) | 2045 |
| FbaI | TGATCA | 1 cut(s) | 1390 |
| FblI | GTMKAC | 2 cut(s) | 1447, 1699 |
| Fnu4HI | GCNGC | 6 cut(s) | 656, 810, 1478, 1932, 1950, 2085 |
| FokI | GGATG | 7 cut(s) | 77, 151, 998, 1351, 1436, 1541, 1928 |
| FriOI | GRGCYC | 1 cut(s) | 1176 |
| Fsp4HI | GCNGC | 6 cut(s) | 656, 810, 1478, 1932, 1950, 2085 |
| FspBI | CTAG | 4 cut(s) | 840, 1182, 1220, 2076 |
| GlaI | GCGC | 2 cut(s) | 1868, 2140 |
| GluI | GCNGC | 6 cut(s) | 656, 810, 1478, 1932, 1950, 2085 |
| GsuI | CTGGAG | 3 cut(s) | 123, 476, 684 |
| HaeII | RGCGCY | 2 cut(s) | 1870, 2142 |
| HaeIII | GGCC | 1 cut(s) | 1167 |
| HapII | CCGG | 5 cut(s) | 32, 142, 560, 1194, 1993 |
| HgaI | GACGC | 1 cut(s) | 1946 |
| HhaI | GCGC | 2 cut(s) | 1869, 2141 |
| Hin1I | GRCGYC | 2 cut(s) | 1867, 1957 |
| Hin1II | CATG | 7 cut(s) | 342, 487, 897, 933, 977, 1956, 1984 |
| Hin6I | GCGC | 2 cut(s) | 1867, 2139 |
| HinP1I | GCGC | 2 cut(s) | 1867, 2139 |
| HinfI | GANTC | 7 cut(s) | 74, 741, 982, 1062, 1311, 1325, 1444 |
| HpaII | CCGG | 5 cut(s) | 32, 142, 560, 1194, 1993 |
| HphI | GGTGA | 2 cut(s) | 554, 562 |
| Hpy166II | GTNNAC | 7 cut(s) | 119, 545, 944, 1160, 1448, 1578, 1700 |
| Hpy188III | TCNNGA | 9 cut(s) | 78, 296, 663, 1086, 1370, 1462, 1601, 2144, 2171 |
| Hpy8I | GTNNAC | 7 cut(s) | 119, 545, 944, 1160, 1448, 1578, 1700 |
| Hpy99I | CGWCG | 1 cut(s) | 1962 |
| HpyCH4III | ACNGT | 6 cut(s) | 11, 27, 948, 953, 1130, 1792 |
| HpyCH4IV | ACGT | 4 cut(s) | 20, 1187, 1414, 1639 |
| HpyF3I | CTNAG | 6 cut(s) | 294, 573, 1101, 1460, 2133, 2172 |
| HpySE526I | ACGT | 4 cut(s) | 20, 1187, 1414, 1639 |
| Hsp92I | GRCGYC | 2 cut(s) | 1867, 1957 |
| Hsp92II | CATG | 7 cut(s) | 342, 487, 897, 933, 977, 1956, 1984 |
| HspAI | GCGC | 2 cut(s) | 1867, 2139 |
| KasI | GGCGCC | 1 cut(s) | 1866 |
| Ksp22I | TGATCA | 1 cut(s) | 1390 |
| Kzo9I | GATC | 8 cut(s) | 218, 259, 361, 1236, 1390, 1456, 1609, 1750 |
| LguI | GCTCTTC | 1 cut(s) | 1830 |
| LmnI | GCTCC | 5 cut(s) | 154, 520, 1372, 1729, 1984 |
| Lsp1109I | GCAGC | 4 cut(s) | 667, 796, 1918, 2071 |
| LweI | GCATC | 6 cut(s) | 407, 454, 1329, 1534, 1614, 2185 |
| MaeI | CTAG | 4 cut(s) | 840, 1182, 1220, 2076 |
| MaeII | ACGT | 4 cut(s) | 20, 1187, 1414, 1639 |
| MaeIII | GTNAC | 4 cut(s) | 21, 1124, 1143, 1657 |
| MalI | GATC | 8 cut(s) | 220, 261, 363, 1238, 1392, 1458, 1611, 1752 |
| MboI | GATC | 8 cut(s) | 218, 259, 361, 1236, 1390, 1456, 1609, 1750 |
| MflI | RGATCY | 5 cut(s) | 259, 361, 1456, 1609, 1750 |
| MhlI | GDGCHC | 6 cut(s) | 151, 681, 1176, 1747, 2038, 2134 |
| MlsI | TGGCCA | 1 cut(s) | 1167 |
| MluCI | AATT | 7 cut(s) | 302, 403, 1021, 1089, 1432, 1844, 2156 |
| MluNI | TGGCCA | 1 cut(s) | 1167 |
| Mly113I | GGCGCC | 1 cut(s) | 1867 |
| MlyI | GAGTC | 4 cut(s) | 68, 750, 1320, 1453 |
| MmeI | TCCRAC | 1 cut(s) | 1386 |
| Mox20I | TGGCCA | 1 cut(s) | 1167 |
| Mph1103I | ATGCAT | 1 cut(s) | 400 |
| MroXI | GAANNNNTTC | 2 cut(s) | 190, 1093 |
| MscI | TGGCCA | 1 cut(s) | 1167 |
| MseI | TTAA | 6 cut(s) | 123, 171, 204, 264, 1154, 1736 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1915 |
| Msp20I | TGGCCA | 1 cut(s) | 1167 |
| MspA1I | CMGCKG | 2 cut(s) | 658, 776 |
| MspCI | CTTAAG | 2 cut(s) | 203, 1153 |
| MspI | CCGG | 5 cut(s) | 32, 142, 560, 1194, 1993 |
| MspR9I | CCNGG | 4 cut(s) | 33, 142, 560, 1194 |
| Mva1269I | GAATGC | 1 cut(s) | 2125 |
| NarI | GGCGCC | 1 cut(s) | 1867 |
| NciI | CCSGG | 4 cut(s) | 33, 142, 560, 1194 |
| NdeII | GATC | 8 cut(s) | 218, 259, 361, 1236, 1390, 1456, 1609, 1750 |
| NlaIII | CATG | 7 cut(s) | 342, 487, 897, 933, 977, 1956, 1984 |
| NlaIV | GGNNCC | 7 cut(s) | 363, 1481, 1509, 1752, 1868, 2035, 2059 |
| NmuCI | GTSAC | 1 cut(s) | 21 |
| NsiI | ATGCAT | 1 cut(s) | 400 |
| NspI | RCATGY | 1 cut(s) | 897 |
| OliI | CACNNNNGTG | 1 cut(s) | 1915 |
| PaeR7I | CTCGAG | 1 cut(s) | 2142 |
| PaqCI | CACCTGC | 2 cut(s) | 794, 2021 |
| PciSI | GCTCTTC | 1 cut(s) | 1830 |
| PctI | GAATGC | 1 cut(s) | 2125 |
| PdmI | GAANNNNTTC | 2 cut(s) | 190, 1093 |
| PfeI | GAWTC | 3 cut(s) | 982, 1062, 1325 |
| PflFI | GACNNNGTC | 1 cut(s) | 991 |
| PfoI | TCCNGGA | 2 cut(s) | 31, 1192 |
| PkrI | GCNGC | 6 cut(s) | 657, 811, 1479, 1933, 1951, 2086 |
| PleI | GAGTC | 4 cut(s) | 68, 749, 1319, 1452 |
| PluTI | GGCGCC | 1 cut(s) | 1870 |
| PmaCI | CACGTG | 1 cut(s) | 1415 |
| PmlI | CACGTG | 1 cut(s) | 1415 |
| PpsI | GAGTC | 4 cut(s) | 68, 749, 1319, 1452 |
| Ppu21I | YACGTR | 3 cut(s) | 1188, 1415, 1640 |
| PshAI | GACNNNNGTC | 1 cut(s) | 205 |
| PspCI | CACGTG | 1 cut(s) | 1415 |
| PspN4I | GGNNCC | 7 cut(s) | 363, 1481, 1509, 1752, 1868, 2035, 2059 |
| PspPI | GGNCC | 1 cut(s) | 993 |
| PstI | CTGCAG | 1 cut(s) | 657 |
| PstNI | CAGNNNCTG | 1 cut(s) | 809 |
| PsuI | RGATCY | 5 cut(s) | 259, 361, 1456, 1609, 1750 |
| PsyI | GACNNNGTC | 1 cut(s) | 991 |
| PvuII | CAGCTG | 1 cut(s) | 776 |
| RsaI | GTAC | 6 cut(s) | 722, 913, 950, 1159, 1588, 1924 |
| RsaNI | GTAC | 6 cut(s) | 721, 912, 949, 1158, 1587, 1923 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1915 |
| SapI | GCTCTTC | 1 cut(s) | 1830 |
| SaqAI | TTAA | 6 cut(s) | 123, 171, 204, 264, 1154, 1736 |
| SatI | GCNGC | 6 cut(s) | 656, 810, 1478, 1932, 1950, 2085 |
| Sau3AI | GATC | 8 cut(s) | 218, 259, 361, 1236, 1390, 1456, 1609, 1750 |
| Sau96I | GGNCC | 1 cut(s) | 993 |
| SchI | GAGTC | 4 cut(s) | 68, 750, 1320, 1453 |
| ScrFI | CCNGG | 4 cut(s) | 33, 142, 560, 1194 |
| SduI | GDGCHC | 6 cut(s) | 151, 681, 1176, 1747, 2038, 2134 |
| SfaNI | GCATC | 6 cut(s) | 407, 454, 1329, 1534, 1614, 2185 |
| SfcI | CTRYAG | 2 cut(s) | 653, 876 |
| SfoI | GGCGCC | 1 cut(s) | 1868 |
| Sfr274I | CTCGAG | 1 cut(s) | 2142 |
| SinI | GGWCC | 1 cut(s) | 993 |
| SlaI | CTCGAG | 1 cut(s) | 2142 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1915 |
| SmlI | CTYRAG | 5 cut(s) | 203, 1153, 1298, 1649, 2142 |
| SmoI | CTYRAG | 5 cut(s) | 203, 1153, 1298, 1649, 2142 |
| Sse9I | AATT | 7 cut(s) | 302, 403, 1021, 1089, 1432, 1844, 2156 |
| SsiI | CCGC | 8 cut(s) | 350, 658, 956, 1477, 1693, 1832, 1949, 2038 |
| SspDI | GGCGCC | 1 cut(s) | 1866 |
| SspI | AATATT | 3 cut(s) | 127, 1049, 1121 |
| SspMI | CTAG | 4 cut(s) | 840, 1182, 1220, 2076 |
| StyD4I | CCNGG | 4 cut(s) | 31, 140, 558, 1192 |
| StyI | CCWWGG | 1 cut(s) | 1168 |
| TaaI | ACNGT | 6 cut(s) | 11, 27, 948, 953, 1130, 1792 |
| TaiI | ACGT | 4 cut(s) | 23, 1190, 1417, 1642 |
| TaqI | TCGA | 8 cut(s) | 79, 217, 739, 1294, 1600, 1812, 2110, 2143 |
| TaqII | GACCGA | 1 cut(s) | 435 |
| TasI | AATT | 7 cut(s) | 302, 403, 1021, 1089, 1432, 1844, 2156 |
| TatI | WGTACW | 4 cut(s) | 720, 911, 948, 1157 |
| TauI | GCSGC | 2 cut(s) | 1480, 1952 |
| TfiI | GAWTC | 3 cut(s) | 982, 1062, 1325 |
| Tru1I | TTAA | 6 cut(s) | 123, 171, 204, 264, 1154, 1736 |
| Tru9I | TTAA | 6 cut(s) | 123, 171, 204, 264, 1154, 1736 |
| TscAI | CASTG | 5 cut(s) | 621, 1340, 1752, 1922, 2031 |
| TseFI | GTSAC | 1 cut(s) | 21 |
| TseI | GCWGC | 4 cut(s) | 655, 809, 1931, 2084 |
| Tsp45I | GTSAC | 1 cut(s) | 21 |
| TspDTI | ATGAA | 7 cut(s) | 586, 1086, 1099, 1767, 1862, 1930, 2096 |
| TspRI | CASTG | 5 cut(s) | 621, 1340, 1752, 1922, 2031 |
| Tth111I | GACNNNGTC | 1 cut(s) | 991 |
| Vha464I | CTTAAG | 2 cut(s) | 203, 1153 |
| VpaK11BI | GGWCC | 1 cut(s) | 993 |
| XapI | RAATTY | 3 cut(s) | 302, 1432, 1844 |
| XceI | RCATGY | 1 cut(s) | 897 |
| XhoI | CTCGAG | 1 cut(s) | 2142 |
| XmiI | GTMKAC | 2 cut(s) | 1447, 1699 |
| XmnI | GAANNNNTTC | 2 cut(s) | 190, 1093 |
| XspI | CTAG | 4 cut(s) | 840, 1182, 1220, 2076 |
| Zsp2I | ATGCAT | 1 cut(s) | 400 |