RNA binding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cu_bind_like | PF02298 | 31 - 113 | 4e-13 | Plastocyanin-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 509 |
| Acc36I | ACCTGC | 1 cut(s) | 509 |
| AccB1I | GGYRCC | 1 cut(s) | 397 |
| AccIII | TCCGGA | 1 cut(s) | 412 |
| AciI | CCGC | 3 cut(s) | 312, 431, 467 |
| AcuI | CTGAAG | 1 cut(s) | 84 |
| AgsI | TTSAA | 2 cut(s) | 283, 343 |
| AjnI | CCWGG | 2 cut(s) | 204, 469 |
| AluBI | AGCT | 4 cut(s) | 234, 325, 410, 443 |
| AluI | AGCT | 4 cut(s) | 234, 325, 410, 443 |
| Alw21I | GWGCWC | 1 cut(s) | 370 |
| Alw26I | GTCTC | 1 cut(s) | 410 |
| Aor13HI | TCCGGA | 1 cut(s) | 412 |
| ApeKI | GCWGC | 2 cut(s) | 443, 461 |
| AseI | ATTAAT | 1 cut(s) | 476 |
| AsuHPI | GGTGA | 2 cut(s) | 136, 286 |
| BanI | GGYRCC | 1 cut(s) | 397 |
| BanII | GRGCYC | 1 cut(s) | 388 |
| Bbv12I | GWGCWC | 1 cut(s) | 370 |
| BbvI | GCAGC | 2 cut(s) | 430, 448 |
| BccI | CCATC | 2 cut(s) | 80, 526 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 166, 200 |
| BciT130I | CCWGG | 2 cut(s) | 206, 471 |
| BcoDI | GTCTC | 1 cut(s) | 410 |
| BfaI | CTAG | 1 cut(s) | 407 |
| BfuAI | ACCTGC | 1 cut(s) | 509 |
| BisI | GCNGC | 4 cut(s) | 313, 432, 444, 462 |
| BlsI | GCNGC | 4 cut(s) | 314, 433, 445, 463 |
| Bme1390I | CCNGG | 2 cut(s) | 206, 471 |
| BmiI | GGNNCC | 2 cut(s) | 387, 399 |
| BmrFI | CCNGG | 2 cut(s) | 206, 471 |
| BpmI | CTGGAG | 1 cut(s) | 183 |
| BsaJI | CCNNGG | 1 cut(s) | 184 |
| BsaWI | WCCGGW | 1 cut(s) | 412 |
| Bse118I | RCCGGY | 2 cut(s) | 149, 400 |
| Bse1I | ACTGG | 3 cut(s) | 26, 200, 456 |
| BseAI | TCCGGA | 1 cut(s) | 412 |
| BseBI | CCWGG | 2 cut(s) | 206, 471 |
| BseDI | CCNNGG | 1 cut(s) | 184 |
| BseGI | GGATG | 1 cut(s) | 537 |
| BseNI | ACTGG | 3 cut(s) | 26, 200, 456 |
| BseXI | GCAGC | 2 cut(s) | 430, 448 |
| BseYI | CCCAGC | 1 cut(s) | 290 |
| BsgI | GTGCAG | 2 cut(s) | 429, 447 |
| Bsh1285I | CGRYCG | 1 cut(s) | 84 |
| BshNI | GGYRCC | 1 cut(s) | 397 |
| BsiEI | CGRYCG | 1 cut(s) | 84 |
| BsiHKAI | GWGCWC | 1 cut(s) | 370 |
| BsiSI | CCGG | 4 cut(s) | 150, 395, 401, 413 |
| BsmAI | GTCTC | 1 cut(s) | 410 |
| BsmBI | CGTCTC | 1 cut(s) | 410 |
| Bsp1286I | GDGCHC | 2 cut(s) | 370, 388 |
| Bsp13I | TCCGGA | 1 cut(s) | 412 |
| Bsp143I | GATC | 1 cut(s) | 109 |
| BspACI | CCGC | 3 cut(s) | 312, 431, 467 |
| BspEI | TCCGGA | 1 cut(s) | 412 |
| BspLI | GGNNCC | 2 cut(s) | 387, 399 |
| BspMI | ACCTGC | 1 cut(s) | 509 |
| BspT107I | GGYRCC | 1 cut(s) | 397 |
| BsrFI | RCCGGY | 2 cut(s) | 149, 400 |
| BsrI | ACTGG | 3 cut(s) | 26, 200, 456 |
| BssAI | RCCGGY | 2 cut(s) | 149, 400 |
| BssECI | CCNNGG | 1 cut(s) | 184 |
| BssMI | GATC | 1 cut(s) | 109 |
| Bst2UI | CCWGG | 2 cut(s) | 206, 471 |
| Bst4CI | ACNGT | 3 cut(s) | 82, 97, 352 |
| Bst6I | CTCTTC | 1 cut(s) | 47 |
| BstC8I | GCNNGC | 1 cut(s) | 441 |
| BstF5I | GGATG | 1 cut(s) | 537 |
| BstKTI | GATC | 1 cut(s) | 112 |
| BstMAI | GTCTC | 1 cut(s) | 410 |
| BstMBI | GATC | 1 cut(s) | 109 |
| BstMCI | CGRYCG | 1 cut(s) | 84 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 440 |
| BstNI | CCWGG | 2 cut(s) | 206, 471 |
| BstSCI | CCNGG | 2 cut(s) | 204, 469 |
| BstV1I | GCAGC | 2 cut(s) | 430, 448 |
| BtgZI | GCGATG | 1 cut(s) | 168 |
| BtsCI | GGATG | 1 cut(s) | 537 |
| BtsIMutI | CAGTG | 1 cut(s) | 463 |
| BveI | ACCTGC | 1 cut(s) | 509 |
| Cac8I | GCNNGC | 1 cut(s) | 441 |
| Cfr10I | RCCGGY | 2 cut(s) | 149, 400 |
| CviAII | CATG | 1 cut(s) | 362 |
| DpnI | GATC | 1 cut(s) | 111 |
| DpnII | GATC | 1 cut(s) | 109 |
| Eam1104I | CTCTTC | 1 cut(s) | 47 |
| EarI | CTCTTC | 1 cut(s) | 47 |
| Eco24I | GRGCYC | 1 cut(s) | 388 |
| Eco57I | CTGAAG | 1 cut(s) | 84 |
| EcoRII | CCWGG | 2 cut(s) | 204, 469 |
| EcoT38I | GRGCYC | 1 cut(s) | 388 |
| Esp3I | CGTCTC | 1 cut(s) | 410 |
| FaeI | CATG | 1 cut(s) | 365 |
| FaiI | YATR | 8 cut(s) | 38, 164, 166, 228, 363, 381, 428, 494 |
| FatI | CATG | 1 cut(s) | 361 |
| FauNDI | CATATG | 1 cut(s) | 164 |
| Fnu4HI | GCNGC | 4 cut(s) | 313, 432, 444, 462 |
| FokI | GGATG | 1 cut(s) | 544 |
| FriOI | GRGCYC | 1 cut(s) | 388 |
| Fsp4HI | GCNGC | 4 cut(s) | 313, 432, 444, 462 |
| FspBI | CTAG | 1 cut(s) | 407 |
| GluI | GCNGC | 4 cut(s) | 313, 432, 444, 462 |
| GsaI | CCCAGC | 1 cut(s) | 294 |
| GsuI | CTGGAG | 1 cut(s) | 183 |
| HapII | CCGG | 4 cut(s) | 150, 395, 401, 413 |
| Hin1II | CATG | 1 cut(s) | 365 |
| HinfI | GANTC | 1 cut(s) | 127 |
| HpaII | CCGG | 4 cut(s) | 150, 395, 401, 413 |
| HphI | GGTGA | 2 cut(s) | 136, 286 |
| Hpy166II | GTNNAC | 2 cut(s) | 126, 374 |
| Hpy188I | TCNGA | 3 cut(s) | 64, 109, 540 |
| Hpy188III | TCNNGA | 1 cut(s) | 413 |
| Hpy8I | GTNNAC | 2 cut(s) | 126, 374 |
| HpyAV | CCTTC | 2 cut(s) | 32, 349 |
| HpyCH4III | ACNGT | 3 cut(s) | 82, 97, 352 |
| HpyCH4V | TGCA | 2 cut(s) | 446, 464 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 440 |
| Hsp92II | CATG | 1 cut(s) | 365 |
| Kpn2I | TCCGGA | 1 cut(s) | 412 |
| Kzo9I | GATC | 1 cut(s) | 109 |
| LmnI | GCTCC | 3 cut(s) | 322, 391, 415 |
| Lsp1109I | GCAGC | 2 cut(s) | 430, 448 |
| MaeI | CTAG | 1 cut(s) | 407 |
| MaeIII | GTNAC | 5 cut(s) | 76, 211, 265, 274, 329 |
| MalI | GATC | 1 cut(s) | 111 |
| MboI | GATC | 1 cut(s) | 109 |
| MboII | GAAGA | 2 cut(s) | 34, 355 |
| MhlI | GDGCHC | 2 cut(s) | 370, 388 |
| MlyI | GAGTC | 1 cut(s) | 121 |
| MmeI | TCCRAC | 2 cut(s) | 33, 71 |
| MnlI | CCTC | 4 cut(s) | 194, 207, 214, 265 |
| MroI | TCCGGA | 1 cut(s) | 412 |
| MseI | TTAA | 2 cut(s) | 318, 476 |
| MspA1I | CMGCKG | 1 cut(s) | 443 |
| MspI | CCGG | 4 cut(s) | 150, 395, 401, 413 |
| MspR9I | CCNGG | 2 cut(s) | 206, 471 |
| MvaI | CCWGG | 2 cut(s) | 206, 471 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 440 |
| NdeI | CATATG | 1 cut(s) | 164 |
| NdeII | GATC | 1 cut(s) | 109 |
| NlaIII | CATG | 1 cut(s) | 365 |
| NlaIV | GGNNCC | 2 cut(s) | 387, 399 |
| NmuCI | GTSAC | 5 cut(s) | 76, 211, 265, 274, 329 |
| PaqCI | CACCTGC | 1 cut(s) | 509 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 105 |
| PfoI | TCCNGGA | 1 cut(s) | 204 |
| PkrI | GCNGC | 4 cut(s) | 314, 433, 445, 463 |
| PleI | GAGTC | 1 cut(s) | 121 |
| PpsI | GAGTC | 1 cut(s) | 121 |
| PshBI | ATTAAT | 1 cut(s) | 476 |
| Psp6I | CCWGG | 2 cut(s) | 204, 469 |
| PspFI | CCCAGC | 1 cut(s) | 290 |
| PspGI | CCWGG | 2 cut(s) | 204, 469 |
| PspN4I | GGNNCC | 2 cut(s) | 387, 399 |
| PvuII | CAGCTG | 1 cut(s) | 443 |
| SaqAI | TTAA | 2 cut(s) | 318, 476 |
| SatI | GCNGC | 4 cut(s) | 313, 432, 444, 462 |
| Sau3AI | GATC | 1 cut(s) | 109 |
| SchI | GAGTC | 1 cut(s) | 121 |
| ScrFI | CCNGG | 2 cut(s) | 206, 471 |
| SduI | GDGCHC | 2 cut(s) | 370, 388 |
| SetI | ASST | 7 cut(s) | 236, 276, 327, 360, 412, 445, 523 |
| SgrAI | CRCCGGYG | 1 cut(s) | 149 |
| SsiI | CCGC | 3 cut(s) | 312, 431, 467 |
| SspMI | CTAG | 1 cut(s) | 407 |
| StyD4I | CCNGG | 2 cut(s) | 204, 469 |
| TaaI | ACNGT | 3 cut(s) | 82, 97, 352 |
| TaqI | TCGA | 3 cut(s) | 84, 99, 192 |
| TauI | GCSGC | 2 cut(s) | 315, 434 |
| Tru1I | TTAA | 2 cut(s) | 318, 476 |
| Tru9I | TTAA | 2 cut(s) | 318, 476 |
| TscAI | CASTG | 1 cut(s) | 463 |
| TseFI | GTSAC | 5 cut(s) | 76, 211, 265, 274, 329 |
| TseI | GCWGC | 2 cut(s) | 443, 461 |
| Tsp45I | GTSAC | 5 cut(s) | 76, 211, 265, 274, 329 |
| TspDTI | ATGAA | 1 cut(s) | 350 |
| TspGWI | ACGGA | 1 cut(s) | 284 |
| TspRI | CASTG | 1 cut(s) | 463 |
| VspI | ATTAAT | 1 cut(s) | 476 |
| XspI | CTAG | 1 cut(s) | 407 |