FvH4_1g04850

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000213
Physical Location & Seq
Reverse (-)
2565095 .. 2565658
564 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04850.t1

Sequence Viewer

Length: 564 bp
ATGATCAGCAATGTCCGGTGTTCTGCTTCGATGTGGCTCACCCGGACAGAGAATGGAGAATGGAGAATGGTGTCTACTATGTGCGAGGGTGGCCCTTTTCCGTTTGACAACAGAGCTTTGGTCCTGGACCTGCCGGGGGACGATGACAAAAAACTCATGTTTGCCTACAGTCAGGAGCCTTGGCGTCTGTGGGTGTATGTTATGTCATTGTCGGAAAAGGAAGAAAGCATCACCAAAATCGGTGTTTTGAAGATGCCGCAGTTGCCTGAGGAATTGGGTTTCGCAAAAGCCTGTCAATTTTTGCACATTCGAGGTCACAAAGCCTGCCTTGTTGTCACCGAAATCAGCCTCCCCAGGGAAGGCGCTCCTGCTTACAATGAGCTCAGCACTCACAAGGCACTCGGTGCAGTCATACCATTTCATTTTGAAGTTGATATGATCAAGGTGGACAAGGACAAGAAGAATTGCTTAACAATCCAATTCATGCCTCTTCGCAGCTTCATATACCATACCAACCCACCCACTCTTCCCATCCCTGAAACAGTTGGTTGCTTTCTGCTGTGA

Protein Analysis

188

Amino Acids

21.28

Weight (kDa)

6.21

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 138
AccI GTMKAC 1 cut(s) 74
AciI CCGC 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 184
AdeI CACNNNGTG 1 cut(s) 404
AfiI CCNNNNNNNGG 3 cut(s) 136, 355, 359
AgsI TTSAA 2 cut(s) 250, 428
AjnI CCWGG 2 cut(s) 123, 353
AluBI AGCT 3 cut(s) 116, 382, 498
AluI AGCT 3 cut(s) 116, 382, 498
Alw21I GWGCWC 1 cut(s) 384
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 495
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 3 cut(s) 92, 121, 127
AsuC2I CCSGG 2 cut(s) 43, 135
AsuHPI GGTGA 3 cut(s) 31, 223, 328
AvaII GGWCC 2 cut(s) 121, 127
AxyI CCTNAGG 1 cut(s) 267
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 507
BccI CCATC 1 cut(s) 539
BciT130I CCWGG 2 cut(s) 125, 355
BclI TGATCA 2 cut(s) 3, 438
BcnI CCSGG 2 cut(s) 43, 135
BfmI CTRYAG 1 cut(s) 166
BfoI RGCGCY 1 cut(s) 366
BfuAI ACCTGC 1 cut(s) 138
BisI GCNGC 2 cut(s) 257, 496
BlpI GCTNAGC 1 cut(s) 383
BlsI GCNGC 2 cut(s) 258, 497
Bme1390I CCNGG 4 cut(s) 43, 125, 135, 355
Bme18I GGWCC 2 cut(s) 121, 127
BmgT120I GGNCC 3 cut(s) 92, 121, 127
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 4 cut(s) 43, 125, 135, 355
BmsI GCATC 2 cut(s) 237, 243
Bpu1102I GCTNAGC 1 cut(s) 383
BpuMI CCSGG 2 cut(s) 43, 135
BsaHI GRCGYC 1 cut(s) 184
BsaJI CCNNGG 4 cut(s) 134, 179, 353, 354
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 355, 359
Bse21I CCTNAGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 2 cut(s) 125, 355
BseDI CCNNGG 4 cut(s) 134, 179, 353, 354
BseGI GGATG 1 cut(s) 531
BseLI CCNNNNNNNGG 3 cut(s) 136, 355, 359
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 2 cut(s) 258, 397
BseXI GCAGC 1 cut(s) 507
BsgI GTGCAG 1 cut(s) 426
BshFI GGCC 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 384
BsiSI CCGG 3 cut(s) 16, 43, 134
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 3 cut(s) 136, 355, 359
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 2 cut(s) 3, 438
Bsp1720I GCTNAGC 1 cut(s) 383
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 2 cut(s) 259, 396
BspLI GGNNCC 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 16
BssECI CCNNGG 4 cut(s) 134, 179, 353, 354
BssMI GATC 2 cut(s) 3, 438
BssNI GRCGYC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 2 cut(s) 125, 355
Bst4CI ACNGT 2 cut(s) 170, 544
Bst6I CTCTTC 2 cut(s) 495, 531
BstACI GRCGYC 1 cut(s) 184
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 267, 383
BstF5I GGATG 1 cut(s) 531
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 2 cut(s) 6, 441
BstMBI GATC 2 cut(s) 3, 438
BstMWI GCNNNNNNNGC 3 cut(s) 90, 262, 404
BstNI CCWGG 2 cut(s) 125, 355
BstSCI CCNGG 4 cut(s) 41, 123, 133, 353
BstSFI CTRYAG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 507
Bsu36I CCTNAGG 1 cut(s) 267
BsuRI GGCC 1 cut(s) 93
BtsCI GGATG 1 cut(s) 531
BveI ACCTGC 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 325
CfoI GCGC 1 cut(s) 365
Cfr13I GGNCC 3 cut(s) 92, 121, 127
CseI GACGC 1 cut(s) 173
CviAII CATG 2 cut(s) 157, 484
CviJI RGCY 9 cut(s) 37, 93, 116, 178, 290, 323, 348, 382, 498
CviKI_1 RGCY 9 cut(s) 37, 93, 116, 178, 290, 323, 348, 382, 498
DdeI CTNAG 2 cut(s) 267, 383
DpnI GATC 2 cut(s) 5, 440
DpnII GATC 2 cut(s) 3, 438
DraIII CACNNNGTG 1 cut(s) 404
Eam1104I CTCTTC 2 cut(s) 495, 531
EarI CTCTTC 2 cut(s) 495, 531
Ecl136II GAGCTC 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 179
Eco24I GRGCYC 1 cut(s) 384
Eco47I GGWCC 2 cut(s) 121, 127
Eco53kI GAGCTC 1 cut(s) 382
Eco81I CCTNAGG 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 123, 353
EcoT14I CCWWGG 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 160, 487
FalI AAGNNNNNCTT 4 cut(s) 312, 344, 452, 484
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 156, 483
FbaI TGATCA 2 cut(s) 3, 438
FblI GTMKAC 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 257, 496
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 2 cut(s) 257, 496
GlaI GCGC 1 cut(s) 364
GluI GCNGC 2 cut(s) 257, 496
HaeII RGCGCY 1 cut(s) 366
HaeIII GGCC 1 cut(s) 93
HapII CCGG 3 cut(s) 16, 43, 134
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 365
Hin1I GRCGYC 1 cut(s) 184
Hin1II CATG 2 cut(s) 160, 487
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HpaII CCGG 3 cut(s) 16, 43, 134
HphI GGTGA 3 cut(s) 31, 223, 328
Hpy166II GTNNAC 2 cut(s) 75, 448
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 2 cut(s) 75, 448
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 2 cut(s) 170, 544
HpyCH4V TGCA 2 cut(s) 304, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 262, 404
HpyF3I CTNAG 2 cut(s) 267, 383
Hsp92I GRCGYC 1 cut(s) 184
Hsp92II CATG 2 cut(s) 160, 487
HspAI GCGC 1 cut(s) 363
Ksp22I TGATCA 2 cut(s) 3, 438
Kzo9I GATC 2 cut(s) 3, 438
LmnI GCTCC 2 cut(s) 175, 370
Lsp1109I GCAGC 1 cut(s) 507
LweI GCATC 2 cut(s) 237, 243
MaeIII GTNAC 2 cut(s) 314, 334
MalI GATC 2 cut(s) 5, 440
MboI GATC 2 cut(s) 3, 438
MboII GAAGA 5 cut(s) 233, 262, 472, 482, 518
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 4 cut(s) 272, 296, 463, 479
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 5 cut(s) 79, 262, 305, 359, 498
MseI TTAA 1 cut(s) 470
MspI CCGG 3 cut(s) 16, 43, 134
MspR9I CCNGG 4 cut(s) 43, 125, 135, 355
MvaI CCWGG 2 cut(s) 125, 355
MwoI GCNNNNNNNGC 3 cut(s) 90, 262, 404
NciI CCSGG 2 cut(s) 43, 135
NdeII GATC 2 cut(s) 3, 438
NlaIII CATG 2 cut(s) 160, 487
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 314, 334
PasI CCCWGGG 1 cut(s) 354
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 2 cut(s) 258, 497
Psp124BI GAGCTC 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 123, 353
PspGI CCWGG 2 cut(s) 123, 353
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 3 cut(s) 92, 121, 127
SacI GAGCTC 1 cut(s) 384
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 2 cut(s) 257, 496
Sau3AI GATC 2 cut(s) 3, 438
Sau96I GGNCC 3 cut(s) 92, 121, 127
ScrFI CCNGG 4 cut(s) 43, 125, 135, 355
SduI GDGCHC 1 cut(s) 384
SetI ASST 6 cut(s) 118, 132, 316, 384, 447, 500
SfaNI GCATC 2 cut(s) 237, 243
SfcI CTRYAG 1 cut(s) 166
SinI GGWCC 2 cut(s) 121, 127
Sse9I AATT 4 cut(s) 272, 296, 463, 479
SsiI CCGC 1 cut(s) 257
SstI GAGCTC 1 cut(s) 384
StyD4I CCNGG 4 cut(s) 41, 123, 133, 353
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 2 cut(s) 170, 544
TaqI TCGA 2 cut(s) 29, 310
TasI AATT 4 cut(s) 272, 296, 463, 479
TauI GCSGC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TseFI GTSAC 2 cut(s) 314, 334
TseI GCWGC 1 cut(s) 495
Tsp45I GTSAC 2 cut(s) 314, 334
TspDTI ATGAA 3 cut(s) 410, 472, 490
TspGWI ACGGA 1 cut(s) 90
VpaK11BI GGWCC 2 cut(s) 121, 127
XmiI GTMKAC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.