Rroxscaffold_5G00339640

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000213
Physical Location & Seq
Forward (+)
8083806 .. 8086880
3075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00339640.1

Sequence Viewer

Length: 1425 bp
ATGCCGGAAGAGGTGGTGGAGATGGGTCTCCAAGAACATGATGTGGTGGTAGTCACCTCCTTCTCCTTGCTCCAAGCTCTTGATATTGTCCAGCTGTCAATTGATGAATCCCATTCCGAACCGCAGTGGGATTTAGTCCAGTCCAGCTGTCAAATGAGGAGTTGGTGTGTATATAAAGGGGGCCGAGGACTAGTTCCCATTTCATATCTCCATTCTCTCAGACAGTCAAATCCAAAAGAAAGGAAACAGAGTAAGCAACAAAAGCAAAGAAACAAACGTTTGTCTATGTCCTCCCAAAAACCGCTTGACCTACCCACCAGCGACGGCGAAGAGAAGTTGATGTGGGAGTTGGACCTGGAGGAGGGTGACAAGTCATTCTACATGTGTTGTCTAGAGCACAGGAGCGACTGGGTGGCTTATGTTGTCCACACCATCAAACTGTCGGATTTGTTATCATATTCGGCGGTGGGGGACGAGCCACCGCGATTACGGCAAGTGGCTTATGAGGCCGGGTCGCATCTCCCCGGCTCTGTGGGTTGCGGTGTTTGGGGATCCCAAATTGTTTTCACCGGCGGCGTGACACCCAGCTCCCCTTTCGGCTTCAGGACAATGGGTCCTGACTCAGTTTGGCATACAAGTGTTTATGCCTTTGAAACTCACACAAATGAGATCACAAAGCTTGATGCCAATTTACAAGAAAGGGAAAATGGAACCTTTGATGGTGGAGCGGGAGGGCAAACTGTGTTTGACCCTAAAATAGGCAAGTGGGAAGGTTTACCCCAACCTCCATTCTTCCAAGCTGACTCTCCATATTATGATCATGGAAACTTCTCTTATGCAATCGCCGGCACAAAGATGTTTGCCTCCCATGAAAAATGTCCAGTGTTCTGCTTTGACGTCGCCCACCCGGATAGAGAATGGAGACTAGTCCCTACTATGTGCCGGGGTGGCCCTTTTCCCTTCAATAACAAGGCTTTAGTCCTGGACCTGCAGGAGGACGACAACAAGAAAATAATGTTTGGCCACAGTTATGAGCCTTGGCGTCTAAGTGTATATCTTATGTCATTGTCTGAAAACCAAGAAATTATCACAAAAATCGGTCATCTGAGGTTGCCAGTGTTGCCTGGTGAATTGGGTTTCCCCCAACGCTATGAATTTTTGCACATAGGAGGTCAGAAAGCCTGCCTTGTTGTCACCGAATTCGACTTCCGTGGTGGAGTCGACGCTCCTGCTTATAATGAGCTCAATACTCATAAGAGACACGGTGCAGTCATACCATTTCAATTTGAAGTTGATATCACCAAGGTGGACAAGGACAGGAAAAATTGTTTAACACTCCAATTCATGCCTCTTCGCAGCTTCGAATACCATACCAACCCATCCAGTTTTCCTGAACCTGAAACGGTTGGCTGCTTTCTGCTGTGA

Protein Analysis

474

Amino Acids

53.64

Weight (kDa)

5.53

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1236
AatII GACGTC 1 cut(s) 900
Acc36I ACCTGC 1 cut(s) 996
AccBSI CCGCTC 1 cut(s) 728
AccI GTMKAC 1 cut(s) 1221
AccII CGCG 1 cut(s) 484
AciI CCGC 7 cut(s) 122, 302, 464, 482, 540, 573, 728
AclI AACGTT 1 cut(s) 277
AclWI GGATC 2 cut(s) 546, 559
AcoI YGGCCR 1 cut(s) 1021
AcsI RAATTY 2 cut(s) 1154, 1199
AcuI CTGAAG 1 cut(s) 586
AcyI GRCGYC 2 cut(s) 897, 1042
AfiI CCNNNNNNNGG 3 cut(s) 361, 758, 994
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 4 cut(s) 653, 964, 1283, 1289
AhdI GACNNNNNGTC 1 cut(s) 612
AhlI ACTAGT 2 cut(s) 190, 925
AjnI CCWGG 3 cut(s) 354, 981, 1123
AleI CACNNNNGTG 1 cut(s) 1304
AluBI AGCT 8 cut(s) 77, 94, 147, 588, 679, 800, 1243, 1359
AluI AGCT 8 cut(s) 77, 94, 147, 588, 679, 800, 1243, 1359
Alw21I GWGCWC 2 cut(s) 399, 1245
Alw26I GTCTC 3 cut(s) 32, 916, 1252
AlwI GGATC 2 cut(s) 546, 559
AoxI GGCC 4 cut(s) 181, 507, 949, 1021
ApeKI GCWGC 2 cut(s) 1356, 1410
ApoI RAATTY 2 cut(s) 1154, 1199
AspS9I GGNCC 5 cut(s) 181, 352, 614, 950, 985
AsuC2I CCSGG 4 cut(s) 511, 525, 908, 944
AsuHPI GGTGA 6 cut(s) 46, 377, 559, 1139, 1186, 1291
AsuII TTCGAA 1 cut(s) 1362
AvaII GGWCC 3 cut(s) 352, 614, 985
BalI TGGCCA 1 cut(s) 1023
BamHI GGATCC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 1245
Bbv12I GWGCWC 2 cut(s) 399, 1245
BbvI GCAGC 2 cut(s) 1368, 1397
BccI CCATC 4 cut(s) 16, 440, 713, 1387
BceAI ACGGC 2 cut(s) 340, 506
BcgI CGANNNNNNTGC 2 cut(s) 1211, 1245
BciT130I CCWGG 3 cut(s) 356, 983, 1125
BclI TGATCA 1 cut(s) 817
BcnI CCSGG 4 cut(s) 511, 525, 908, 944
BcoDI GTCTC 3 cut(s) 32, 916, 1252
BcuI ACTAGT 2 cut(s) 190, 925
BfaI CTAG 3 cut(s) 191, 392, 926
BfmI CTRYAG 1 cut(s) 989
BfuAI ACCTGC 1 cut(s) 996
BglI GCCNNNNNGGC 1 cut(s) 948
BisI GCNGC 3 cut(s) 574, 1357, 1411
BlsI GCNGC 3 cut(s) 575, 1358, 1412
Bme1390I CCNGG 7 cut(s) 356, 511, 525, 908, 944, 983, 1125
Bme18I GGWCC 3 cut(s) 352, 614, 985
BmeRI GACNNNNNGTC 1 cut(s) 612
BmgT120I GGNCC 5 cut(s) 181, 352, 614, 950, 985
BmiI GGNNCC 4 cut(s) 182, 553, 615, 712
BmrFI CCNGG 7 cut(s) 356, 511, 525, 908, 944, 983, 1125
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 2 cut(s) 526, 673
BmuI ACTGGG 1 cut(s) 418
BpmI CTGGAG 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 1362
BpuMI CCSGG 4 cut(s) 511, 525, 908, 944
BsaHI GRCGYC 2 cut(s) 897, 1042
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 6 cut(s) 184, 523, 943, 1037, 1210, 1302
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 3 cut(s) 361, 758, 994
Bse118I RCCGGY 2 cut(s) 569, 845
Bse1I ACTGG 5 cut(s) 139, 413, 881, 1115, 1383
BseBI CCWGG 3 cut(s) 356, 983, 1125
BseDI CCNNGG 6 cut(s) 184, 523, 943, 1037, 1210, 1302
BseGI GGATG 1 cut(s) 1379
BseLI CCNNNNNNNGG 3 cut(s) 361, 758, 994
BseMII CTCAG 3 cut(s) 232, 636, 1097
BseNI ACTGG 5 cut(s) 139, 413, 881, 1115, 1383
BseRI GAGGAG 2 cut(s) 172, 374
BseXI GCAGC 2 cut(s) 1368, 1397
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 1287
Bsh1236I CGCG 1 cut(s) 484
BshFI GGCC 4 cut(s) 183, 509, 951, 1023
BsiHKAI GWGCWC 2 cut(s) 399, 1245
BsiSI CCGG 7 cut(s) 5, 510, 525, 570, 846, 908, 943
BslFI GGGAC 2 cut(s) 485, 914
BslI CCNNNNNNNGG 3 cut(s) 361, 758, 994
BsmAI GTCTC 3 cut(s) 32, 916, 1252
BsmFI GGGAC 2 cut(s) 485, 914
BsnI GGCC 4 cut(s) 183, 509, 951, 1023
Bso31I GGTCTC 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 1362
Bsp1286I GDGCHC 2 cut(s) 399, 1245
Bsp143I GATC 3 cut(s) 551, 669, 817
BspACI CCGC 7 cut(s) 122, 302, 464, 482, 540, 573, 728
BspANI GGCC 4 cut(s) 183, 509, 951, 1023
BspCNI CTCAG 3 cut(s) 231, 635, 1098
BspFNI CGCG 1 cut(s) 484
BspLI GGNNCC 4 cut(s) 182, 553, 615, 712
BspMAI CTGCAG 1 cut(s) 993
BspMI ACCTGC 1 cut(s) 996
BspPI GGATC 2 cut(s) 546, 559
BspT104I TTCGAA 1 cut(s) 1362
BspTNI GGTCTC 1 cut(s) 32
BsrBI CCGCTC 1 cut(s) 728
BsrFI RCCGGY 2 cut(s) 569, 845
BsrI ACTGG 5 cut(s) 139, 413, 881, 1115, 1383
BssAI RCCGGY 2 cut(s) 569, 845
BssECI CCNNGG 6 cut(s) 184, 523, 943, 1037, 1210, 1302
BssMI GATC 3 cut(s) 551, 669, 817
BssNI GRCGYC 2 cut(s) 897, 1042
BssT1I CCWWGG 2 cut(s) 1037, 1302
Bst2UI CCWGG 3 cut(s) 356, 983, 1125
Bst4CI ACNGT 6 cut(s) 225, 441, 742, 1028, 1265, 1405
Bst6I CTCTTC 3 cut(s) 3, 324, 1356
BstACI GRCGYC 2 cut(s) 897, 1042
BstBI TTCGAA 1 cut(s) 1362
BstC8I GCNNGC 2 cut(s) 847, 1183
BstDEI CTNAG 4 cut(s) 218, 622, 1046, 1106
BstDSI CCRYGG 1 cut(s) 1210
BstENI CCTNNNNNAGG 3 cut(s) 359, 756, 992
BstF5I GGATG 1 cut(s) 1379
BstFNI CGCG 1 cut(s) 484
BstKTI GATC 3 cut(s) 554, 672, 820
BstMAI GTCTC 3 cut(s) 32, 916, 1252
BstMBI GATC 3 cut(s) 551, 669, 817
BstMWI GCNNNNNNNGC 5 cut(s) 262, 490, 506, 948, 1120
BstNI CCWGG 3 cut(s) 356, 983, 1125
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 7 cut(s) 354, 509, 523, 906, 942, 981, 1123
BstSFI CTRYAG 1 cut(s) 989
BstUI CGCG 1 cut(s) 484
BstV1I GCAGC 2 cut(s) 1368, 1397
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BsuRI GGCC 4 cut(s) 183, 509, 951, 1023
BtgI CCRYGG 1 cut(s) 1210
BtsCI GGATG 1 cut(s) 1379
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 3 cut(s) 131, 888, 1122
BveI ACCTGC 1 cut(s) 996
Cac8I GCNNGC 2 cut(s) 847, 1183
Cfr10I RCCGGY 2 cut(s) 569, 845
Cfr13I GGNCC 5 cut(s) 181, 352, 614, 950, 985
CseI GACGC 2 cut(s) 1031, 1232
CviAII CATG 5 cut(s) 38, 382, 821, 869, 1345
DdeI CTNAG 4 cut(s) 218, 622, 1046, 1106
DpnI GATC 3 cut(s) 553, 671, 819
DpnII GATC 3 cut(s) 551, 669, 817
DriI GACNNNNNGTC 1 cut(s) 612
EaeI YGGCCR 1 cut(s) 1021
Eam1104I CTCTTC 3 cut(s) 3, 324, 1356
Eam1105I GACNNNNNGTC 1 cut(s) 612
EarI CTCTTC 3 cut(s) 3, 324, 1356
Ecl136II GAGCTC 1 cut(s) 1243
Eco130I CCWWGG 2 cut(s) 1037, 1302
Eco24I GRGCYC 1 cut(s) 1245
Eco31I GGTCTC 1 cut(s) 32
Eco32I GATATC 1 cut(s) 1297
Eco47I GGWCC 3 cut(s) 352, 614, 985
Eco53kI GAGCTC 1 cut(s) 1243
Eco57I CTGAAG 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 1243
EcoNI CCTNNNNNAGG 3 cut(s) 359, 756, 992
EcoO109I RGGNCCY 1 cut(s) 614
EcoRI GAATTC 1 cut(s) 1199
EcoRII CCWGG 3 cut(s) 354, 981, 1123
EcoRV GATATC 1 cut(s) 1297
EcoT14I CCWWGG 2 cut(s) 1037, 1302
EcoT38I GRGCYC 1 cut(s) 1245
ErhI CCWWGG 2 cut(s) 1037, 1302
FaeI CATG 5 cut(s) 41, 385, 824, 872, 1348
FalI AAGNNNNNCTT 2 cut(s) 1170, 1202
FaqI GGGAC 2 cut(s) 485, 914
FatI CATG 5 cut(s) 37, 381, 820, 868, 1344
FauI CCCGC 1 cut(s) 721
FbaI TGATCA 1 cut(s) 817
FblI GTMKAC 1 cut(s) 1221
Fnu4HI GCNGC 3 cut(s) 574, 1357, 1411
FokI GGATG 1 cut(s) 1366
FriOI GRGCYC 1 cut(s) 1245
Fsp4HI GCNGC 3 cut(s) 574, 1357, 1411
FspBI CTAG 3 cut(s) 191, 392, 926
GluI GCNGC 3 cut(s) 574, 1357, 1411
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 4 cut(s) 183, 509, 951, 1023
HapII CCGG 7 cut(s) 5, 510, 525, 570, 846, 908, 943
HgaI GACGC 2 cut(s) 1031, 1232
Hin1I GRCGYC 2 cut(s) 897, 1042
Hin1II CATG 5 cut(s) 41, 385, 824, 872, 1348
HincII GTYRAC 1 cut(s) 1222
HindII GTYRAC 1 cut(s) 1222
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 4 cut(s) 107, 620, 803, 1218
HpaII CCGG 7 cut(s) 5, 510, 525, 570, 846, 908, 943
HphI GGTGA 6 cut(s) 46, 377, 559, 1139, 1186, 1291
Hpy166II GTNNAC 4 cut(s) 427, 776, 1222, 1309
Hpy188I TCNGA 6 cut(s) 118, 221, 445, 1072, 1107, 1176
Hpy188III TCNNGA 5 cut(s) 80, 392, 604, 617, 1391
Hpy8I GTNNAC 4 cut(s) 427, 776, 1222, 1309
Hpy99I CGWCG 3 cut(s) 326, 902, 1226
HpyAV CCTTC 3 cut(s) 70, 764, 970
HpyCH4III ACNGT 6 cut(s) 225, 441, 742, 1028, 1265, 1405
HpyCH4IV ACGT 2 cut(s) 277, 897
HpyCH4V TGCA 4 cut(s) 839, 991, 1162, 1268
HpyF10VI GCNNNNNNNGC 5 cut(s) 262, 490, 506, 948, 1120
HpyF3I CTNAG 4 cut(s) 218, 622, 1046, 1106
HpySE526I ACGT 2 cut(s) 277, 897
Hsp92I GRCGYC 2 cut(s) 897, 1042
Hsp92II CATG 5 cut(s) 41, 385, 824, 872, 1348
KroI GCCGGC 1 cut(s) 845
KroNI GCCGGC 1 cut(s) 847
Ksp22I TGATCA 1 cut(s) 817
Kzo9I GATC 3 cut(s) 551, 669, 817
LmnI GCTCC 5 cut(s) 75, 402, 593, 725, 1231
Lsp1109I GCAGC 2 cut(s) 1368, 1397
LweI GCATC 2 cut(s) 526, 673
MaeI CTAG 3 cut(s) 191, 392, 926
MaeII ACGT 2 cut(s) 277, 897
MaeIII GTNAC 4 cut(s) 52, 365, 577, 1192
MalI GATC 3 cut(s) 553, 671, 819
MbiI CCGCTC 1 cut(s) 728
MboI GATC 3 cut(s) 551, 669, 817
MboII GAAGA 4 cut(s) 20, 341, 784, 1343
MfeI CAATTG 1 cut(s) 99
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 2 cut(s) 399, 1245
MlsI TGGCCA 1 cut(s) 1023
MluNI TGGCCA 1 cut(s) 1023
MlyI GAGTC 3 cut(s) 614, 797, 1227
MmeI TCCRAC 2 cut(s) 330, 423
Mox20I TGGCCA 1 cut(s) 1023
MroNI GCCGGC 1 cut(s) 845
MscI TGGCCA 1 cut(s) 1023
MseI TTAA 1 cut(s) 1331
MslI CAYNNNNRTG 5 cut(s) 636, 663, 854, 1029, 1304
Msp20I TGGCCA 1 cut(s) 1023
MspA1I CMGCKG 2 cut(s) 94, 147
MspI CCGG 7 cut(s) 5, 510, 525, 570, 846, 908, 943
MspR9I CCNGG 7 cut(s) 356, 511, 525, 908, 944, 983, 1125
MunI CAATTG 1 cut(s) 99
MvaI CCWGG 3 cut(s) 356, 983, 1125
MvnI CGCG 1 cut(s) 484
MwoI GCNNNNNNNGC 5 cut(s) 262, 490, 506, 948, 1120
NaeI GCCGGC 1 cut(s) 847
NciI CCSGG 4 cut(s) 511, 525, 908, 944
NdeII GATC 3 cut(s) 551, 669, 817
NgoMIV GCCGGC 1 cut(s) 845
NlaIII CATG 5 cut(s) 41, 385, 824, 872, 1348
NlaIV GGNNCC 4 cut(s) 182, 553, 615, 712
NmeAIII GCCGAG 1 cut(s) 209
NmuCI GTSAC 4 cut(s) 52, 365, 577, 1192
NspI RCATGY 1 cut(s) 385
NspV TTCGAA 1 cut(s) 1362
OliI CACNNNNGTG 1 cut(s) 1304
PciI ACATGT 1 cut(s) 381
PdiI GCCGGC 1 cut(s) 847
PfeI GAWTC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 981
PkrI GCNGC 3 cut(s) 575, 1358, 1412
PleI GAGTC 3 cut(s) 614, 797, 1226
PpsI GAGTC 3 cut(s) 614, 797, 1226
PpuMI RGGWCCY 1 cut(s) 614
PscI ACATGT 1 cut(s) 381
PsiI TTATAA 1 cut(s) 1236
Psp124BI GAGCTC 1 cut(s) 1245
Psp1406I AACGTT 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 614
Psp6I CCWGG 3 cut(s) 354, 981, 1123
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 3 cut(s) 354, 981, 1123
PspN4I GGNNCC 4 cut(s) 182, 553, 615, 712
PspPI GGNCC 5 cut(s) 181, 352, 614, 950, 985
PspPPI RGGWCCY 1 cut(s) 614
PstI CTGCAG 1 cut(s) 993
PsuI RGATCY 1 cut(s) 551
PvuII CAGCTG 2 cut(s) 94, 147
RseI CAYNNNNRTG 5 cut(s) 636, 663, 854, 1029, 1304
SacI GAGCTC 1 cut(s) 1245
SalI GTCGAC 1 cut(s) 1220
SaqAI TTAA 1 cut(s) 1331
SatI GCNGC 3 cut(s) 574, 1357, 1411
Sau3AI GATC 3 cut(s) 551, 669, 817
Sau96I GGNCC 5 cut(s) 181, 352, 614, 950, 985
SbfI CCTGCAGG 1 cut(s) 993
SchI GAGTC 3 cut(s) 614, 797, 1227
ScrFI CCNGG 7 cut(s) 356, 511, 525, 908, 944, 983, 1125
SdaI CCTGCAGG 1 cut(s) 993
SduI GDGCHC 2 cut(s) 399, 1245
SfaNI GCATC 2 cut(s) 526, 673
SfcI CTRYAG 1 cut(s) 989
SfuI TTCGAA 1 cut(s) 1362
SgrAI CRCCGGYG 1 cut(s) 569
SinI GGWCC 3 cut(s) 352, 614, 985
SmiMI CAYNNNNRTG 5 cut(s) 636, 663, 854, 1029, 1304
SpeI ACTAGT 2 cut(s) 190, 925
Sse8387I CCTGCAGG 1 cut(s) 993
SsiI CCGC 7 cut(s) 122, 302, 464, 482, 540, 573, 728
SspMI CTAG 3 cut(s) 191, 392, 926
SstI GAGCTC 1 cut(s) 1245
StyD4I CCNGG 7 cut(s) 354, 509, 523, 906, 942, 981, 1123
StyI CCWWGG 2 cut(s) 1037, 1302
TaaI ACNGT 6 cut(s) 225, 441, 742, 1028, 1265, 1405
TaiI ACGT 2 cut(s) 280, 900
TaqI TCGA 3 cut(s) 1203, 1221, 1362
TaqII GACCGA 1 cut(s) 1088
TauI GCSGC 1 cut(s) 576
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 1331
Tru9I TTAA 1 cut(s) 1331
TscAI CASTG 3 cut(s) 131, 888, 1122
TseFI GTSAC 4 cut(s) 52, 365, 577, 1192
TseI GCWGC 2 cut(s) 1356, 1410
Tsp45I GTSAC 4 cut(s) 52, 365, 577, 1192
TspDTI ATGAA 5 cut(s) 120, 192, 885, 1167, 1333
TspGWI ACGGA 1 cut(s) 1199
TspRI CASTG 3 cut(s) 131, 888, 1122
VpaK11BI GGWCC 3 cut(s) 352, 614, 985
XagI CCTNNNNNAGG 3 cut(s) 359, 756, 992
XapI RAATTY 2 cut(s) 1154, 1199
XbaI TCTAGA 1 cut(s) 391
XceI RCATGY 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 1221
XspI CTAG 3 cut(s) 191, 392, 926
ZraI GACGTC 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.