RNA binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1193 |
| AccB1I | GGYRCC | 2 cut(s) | 208, 1097 |
| AccBSI | CCGCTC | 1 cut(s) | 669 |
| AccII | CGCG | 2 cut(s) | 48, 574 |
| AclWI | GGATC | 2 cut(s) | 261, 1013 |
| AcoI | YGGCCR | 2 cut(s) | 258, 819 |
| AdeI | CACNNNGTG | 1 cut(s) | 1097 |
| AfaI | GTAC | 4 cut(s) | 504, 549, 556, 1107 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 47, 368, 422, 423, 550, 551, 755, 973 |
| AgsI | TTSAA | 5 cut(s) | 61, 113, 331, 515, 1115 |
| AjnI | CCWGG | 2 cut(s) | 274, 885 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 299, 331 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 816, 848 |
| AluBI | AGCT | 5 cut(s) | 9, 64, 108, 116, 764 |
| AluI | AGCT | 5 cut(s) | 9, 64, 108, 116, 764 |
| Alw21I | GWGCWC | 3 cut(s) | 936, 1093, 1245 |
| Alw26I | GTCTC | 1 cut(s) | 96 |
| AlwI | GGATC | 2 cut(s) | 261, 1013 |
| Ama87I | CYCGRG | 1 cut(s) | 440 |
| AoxI | GGCC | 6 cut(s) | 258, 370, 693, 739, 757, 819 |
| ApeKI | GCWGC | 1 cut(s) | 321 |
| AseI | ATTAAT | 1 cut(s) | 915 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1154 |
| AspLEI | GCGC | 1 cut(s) | 576 |
| AspS9I | GGNCC | 7 cut(s) | 303, 359, 371, 664, 694, 740, 1205 |
| AsuHPI | GGTGA | 5 cut(s) | 26, 241, 290, 889, 988 |
| AsuII | TTCGAA | 1 cut(s) | 1188 |
| AvaI | CYCGRG | 1 cut(s) | 440 |
| AvaII | GGWCC | 4 cut(s) | 303, 359, 664, 1205 |
| BanI | GGYRCC | 2 cut(s) | 208, 1097 |
| BbsI | GAAGAC | 1 cut(s) | 307 |
| Bbv12I | GWGCWC | 3 cut(s) | 936, 1093, 1245 |
| BbvI | GCAGC | 1 cut(s) | 333 |
| BccI | CCATC | 3 cut(s) | 61, 194, 975 |
| BceAI | ACGGC | 3 cut(s) | 199, 828, 1088 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 62, 96 |
| BciT130I | CCWGG | 2 cut(s) | 276, 887 |
| BclI | TGATCA | 1 cut(s) | 658 |
| BcoDI | GTCTC | 1 cut(s) | 96 |
| BfaI | CTAG | 3 cut(s) | 636, 767, 971 |
| BfmI | CTRYAG | 1 cut(s) | 319 |
| BfuAI | ACCTGC | 1 cut(s) | 1193 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 738 |
| BglII | AGATCT | 2 cut(s) | 268, 1042 |
| BisI | GCNGC | 6 cut(s) | 322, 325, 572, 693, 739, 1101 |
| BlsI | GCNGC | 6 cut(s) | 323, 326, 573, 694, 740, 1102 |
| Bme1390I | CCNGG | 2 cut(s) | 276, 887 |
| Bme18I | GGWCC | 4 cut(s) | 303, 359, 664, 1205 |
| BmeT110I | CYCGRG | 1 cut(s) | 440 |
| BmgT120I | GGNCC | 7 cut(s) | 303, 359, 371, 664, 694, 740, 1205 |
| BmiI | GGNNCC | 4 cut(s) | 210, 304, 619, 1099 |
| BmrFI | CCNGG | 2 cut(s) | 276, 887 |
| BmsI | GCATC | 2 cut(s) | 379, 426 |
| BpiI | GAAGAC | 1 cut(s) | 307 |
| Bpu14I | TTCGAA | 1 cut(s) | 1188 |
| BsaJI | CCNNGG | 5 cut(s) | 158, 274, 441, 733, 873 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 47, 368, 422, 423, 550, 551, 755, 973 |
| Bse118I | RCCGGY | 2 cut(s) | 488, 922 |
| Bse1I | ACTGG | 1 cut(s) | 510 |
| BseBI | CCWGG | 2 cut(s) | 276, 887 |
| BseDI | CCNNGG | 5 cut(s) | 158, 274, 441, 733, 873 |
| BseGI | GGATG | 3 cut(s) | 135, 883, 955 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 47, 368, 422, 423, 550, 551, 755, 973 |
| BseMII | CTCAG | 1 cut(s) | 471 |
| BseNI | ACTGG | 1 cut(s) | 510 |
| BseRI | GAGGAG | 1 cut(s) | 727 |
| BseX3I | CGGCCG | 1 cut(s) | 819 |
| BseXI | GCAGC | 1 cut(s) | 333 |
| BseYI | CCCAGC | 2 cut(s) | 703, 722 |
| Bsh1236I | CGCG | 2 cut(s) | 48, 574 |
| Bsh1285I | CGRYCG | 1 cut(s) | 822 |
| BshFI | GGCC | 6 cut(s) | 260, 372, 695, 741, 759, 821 |
| BshNI | GGYRCC | 2 cut(s) | 208, 1097 |
| BsiEI | CGRYCG | 1 cut(s) | 822 |
| BsiHKAI | GWGCWC | 3 cut(s) | 936, 1093, 1245 |
| BsiHKCI | CYCGRG | 1 cut(s) | 440 |
| BsiSI | CCGG | 3 cut(s) | 489, 615, 923 |
| BslFI | GGGAC | 1 cut(s) | 704 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 47, 368, 422, 423, 550, 551, 755, 973 |
| BsmAI | GTCTC | 1 cut(s) | 96 |
| BsmFI | GGGAC | 1 cut(s) | 704 |
| BsnI | GGCC | 6 cut(s) | 260, 372, 695, 741, 759, 821 |
| BsoBI | CYCGRG | 1 cut(s) | 440 |
| Bsp119I | TTCGAA | 1 cut(s) | 1188 |
| Bsp1286I | GDGCHC | 3 cut(s) | 936, 1093, 1245 |
| Bsp143I | GATC | 5 cut(s) | 253, 268, 658, 1018, 1042 |
| BspANI | GGCC | 6 cut(s) | 260, 372, 695, 741, 759, 821 |
| BspCNI | CTCAG | 1 cut(s) | 472 |
| BspFNI | CGCG | 2 cut(s) | 48, 574 |
| BspLI | GGNNCC | 4 cut(s) | 210, 304, 619, 1099 |
| BspMAI | CTGCAG | 1 cut(s) | 323 |
| BspMI | ACCTGC | 1 cut(s) | 1193 |
| BspPI | GGATC | 2 cut(s) | 261, 1013 |
| BspT104I | TTCGAA | 1 cut(s) | 1188 |
| BspT107I | GGYRCC | 2 cut(s) | 208, 1097 |
| BsrBI | CCGCTC | 1 cut(s) | 669 |
| BsrFI | RCCGGY | 2 cut(s) | 488, 922 |
| BsrI | ACTGG | 1 cut(s) | 510 |
| BssAI | RCCGGY | 2 cut(s) | 488, 922 |
| BssECI | CCNNGG | 5 cut(s) | 158, 274, 441, 733, 873 |
| BssMI | GATC | 5 cut(s) | 253, 268, 658, 1018, 1042 |
| BssT1I | CCWWGG | 3 cut(s) | 158, 733, 873 |
| Bst2UI | CCWGG | 2 cut(s) | 276, 887 |
| Bst4CI | ACNGT | 4 cut(s) | 14, 797, 956, 1180 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 37, 1097 |
| BstBI | TTCGAA | 1 cut(s) | 1188 |
| BstC8I | GCNNGC | 3 cut(s) | 207, 490, 924 |
| BstDEI | CTNAG | 1 cut(s) | 480 |
| BstF5I | GGATG | 3 cut(s) | 135, 883, 955 |
| BstFNI | CGCG | 2 cut(s) | 48, 574 |
| BstHHI | GCGC | 1 cut(s) | 576 |
| BstKTI | GATC | 5 cut(s) | 256, 271, 661, 1021, 1045 |
| BstMAI | GTCTC | 1 cut(s) | 96 |
| BstMBI | GATC | 5 cut(s) | 253, 268, 658, 1018, 1042 |
| BstMCI | CGRYCG | 1 cut(s) | 822 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 37, 211, 485, 738, 1097 |
| BstNI | CCWGG | 2 cut(s) | 276, 887 |
| BstNSI | RCATGY | 1 cut(s) | 730 |
| BstSCI | CCNGG | 2 cut(s) | 274, 885 |
| BstSFI | CTRYAG | 1 cut(s) | 319 |
| BstUI | CGCG | 2 cut(s) | 48, 574 |
| BstV1I | GCAGC | 1 cut(s) | 333 |
| BstV2I | GAAGAC | 1 cut(s) | 307 |
| BstX2I | RGATCY | 4 cut(s) | 253, 268, 1018, 1042 |
| BstYI | RGATCY | 4 cut(s) | 253, 268, 1018, 1042 |
| BstZI | CGGCCG | 1 cut(s) | 819 |
| BsuRI | GGCC | 6 cut(s) | 260, 372, 695, 741, 759, 821 |
| BtgZI | GCGATG | 1 cut(s) | 161 |
| BtsCI | GGATG | 3 cut(s) | 135, 883, 955 |
| BtsIMutI | CAGTG | 1 cut(s) | 1165 |
| BveI | ACCTGC | 1 cut(s) | 1193 |
| Cac8I | GCNNGC | 3 cut(s) | 207, 490, 924 |
| CfoI | GCGC | 1 cut(s) | 576 |
| Cfr10I | RCCGGY | 2 cut(s) | 488, 922 |
| Cfr13I | GGNCC | 7 cut(s) | 303, 359, 371, 664, 694, 740, 1205 |
| Csp6I | GTAC | 4 cut(s) | 503, 548, 555, 1106 |
| CviAII | CATG | 7 cut(s) | 340, 410, 603, 708, 727, 838, 1199 |
| CviQI | GTAC | 4 cut(s) | 503, 548, 555, 1106 |
| DdeI | CTNAG | 1 cut(s) | 480 |
| DpnI | GATC | 5 cut(s) | 255, 270, 660, 1020, 1044 |
| DpnII | GATC | 5 cut(s) | 253, 268, 658, 1018, 1042 |
| DraI | TTTAAA | 1 cut(s) | 754 |
| DraIII | CACNNNGTG | 1 cut(s) | 1097 |
| EaeI | YGGCCR | 2 cut(s) | 258, 819 |
| EagI | CGGCCG | 1 cut(s) | 819 |
| EclXI | CGGCCG | 1 cut(s) | 819 |
| Eco130I | CCWWGG | 3 cut(s) | 158, 733, 873 |
| Eco32I | GATATC | 1 cut(s) | 895 |
| Eco47I | GGWCC | 4 cut(s) | 303, 359, 664, 1205 |
| Eco52I | CGGCCG | 1 cut(s) | 819 |
| Eco88I | CYCGRG | 1 cut(s) | 440 |
| EcoRII | CCWGG | 2 cut(s) | 274, 885 |
| EcoRV | GATATC | 1 cut(s) | 895 |
| EcoT14I | CCWWGG | 3 cut(s) | 158, 733, 873 |
| ErhI | CCWWGG | 3 cut(s) | 158, 733, 873 |
| FaeI | CATG | 7 cut(s) | 343, 413, 606, 711, 730, 841, 1202 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 299, 331, 797, 829 |
| FaqI | GGGAC | 1 cut(s) | 704 |
| FatI | CATG | 7 cut(s) | 339, 409, 602, 707, 726, 837, 1198 |
| FauI | CCCGC | 1 cut(s) | 47 |
| FbaI | TGATCA | 1 cut(s) | 658 |
| Fnu4HI | GCNGC | 6 cut(s) | 322, 325, 572, 693, 739, 1101 |
| FokI | GGATG | 3 cut(s) | 122, 890, 962 |
| Fsp4HI | GCNGC | 6 cut(s) | 322, 325, 572, 693, 739, 1101 |
| FspBI | CTAG | 3 cut(s) | 636, 767, 971 |
| GlaI | GCGC | 1 cut(s) | 575 |
| GluI | GCNGC | 6 cut(s) | 322, 325, 572, 693, 739, 1101 |
| GsaI | CCCAGC | 2 cut(s) | 707, 726 |
| HaeIII | GGCC | 6 cut(s) | 260, 372, 695, 741, 759, 821 |
| HapII | CCGG | 3 cut(s) | 489, 615, 923 |
| HhaI | GCGC | 1 cut(s) | 576 |
| Hin1II | CATG | 7 cut(s) | 343, 413, 606, 711, 730, 841, 1202 |
| Hin6I | GCGC | 1 cut(s) | 574 |
| HinP1I | GCGC | 1 cut(s) | 574 |
| HindIII | AAGCTT | 1 cut(s) | 114 |
| HinfI | GANTC | 3 cut(s) | 343, 717, 1211 |
| HpaII | CCGG | 3 cut(s) | 489, 615, 923 |
| HphI | GGTGA | 5 cut(s) | 26, 241, 290, 889, 988 |
| Hpy166II | GTNNAC | 2 cut(s) | 775, 1135 |
| Hpy188I | TCNGA | 2 cut(s) | 199, 1036 |
| Hpy188III | TCNNGA | 3 cut(s) | 433, 662, 1208 |
| Hpy8I | GTNNAC | 2 cut(s) | 775, 1135 |
| Hpy99I | CGWCG | 3 cut(s) | 77, 226, 229 |
| HpyAV | CCTTC | 3 cut(s) | 17, 607, 1144 |
| HpyCH4III | ACNGT | 4 cut(s) | 14, 797, 956, 1180 |
| HpyCH4V | TGCA | 3 cut(s) | 321, 608, 1202 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 37, 211, 485, 738, 1097 |
| HpyF3I | CTNAG | 1 cut(s) | 480 |
| Hsp92II | CATG | 7 cut(s) | 343, 413, 606, 711, 730, 841, 1202 |
| HspAI | GCGC | 1 cut(s) | 574 |
| KroI | GCCGGC | 2 cut(s) | 488, 922 |
| KroNI | GCCGGC | 2 cut(s) | 490, 924 |
| Ksp22I | TGATCA | 1 cut(s) | 658 |
| Kzo9I | GATC | 5 cut(s) | 253, 268, 658, 1018, 1042 |
| LmnI | GCTCC | 2 cut(s) | 674, 939 |
| Lsp1109I | GCAGC | 1 cut(s) | 333 |
| LweI | GCATC | 2 cut(s) | 379, 426 |
| MaeI | CTAG | 3 cut(s) | 636, 767, 971 |
| MaeIII | GTNAC | 4 cut(s) | 698, 797, 994, 1218 |
| MalI | GATC | 5 cut(s) | 255, 270, 660, 1020, 1044 |
| MbiI | CCGCTC | 1 cut(s) | 669 |
| MboI | GATC | 5 cut(s) | 253, 268, 658, 1018, 1042 |
| MboII | GAAGA | 5 cut(s) | 29, 32, 307, 527, 902 |
| MflI | RGATCY | 4 cut(s) | 253, 268, 1018, 1042 |
| MhlI | GDGCHC | 3 cut(s) | 936, 1093, 1245 |
| MluCI | AATT | 4 cut(s) | 236, 623, 1115, 1183 |
| MlyI | GAGTC | 2 cut(s) | 726, 1205 |
| MnlI | CCTC | 8 cut(s) | 51, 384, 436, 449, 526, 705, 753, 845 |
| MroNI | GCCGGC | 2 cut(s) | 488, 922 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1154 |
| MseI | TTAA | 3 cut(s) | 239, 753, 915 |
| MspA1I | CMGCKG | 1 cut(s) | 324 |
| MspI | CCGG | 3 cut(s) | 489, 615, 923 |
| MspR9I | CCNGG | 2 cut(s) | 276, 887 |
| MvaI | CCWGG | 2 cut(s) | 276, 887 |
| MvnI | CGCG | 2 cut(s) | 48, 574 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 37, 211, 485, 738, 1097 |
| NaeI | GCCGGC | 2 cut(s) | 490, 924 |
| NdeII | GATC | 5 cut(s) | 253, 268, 658, 1018, 1042 |
| NgoMIV | GCCGGC | 2 cut(s) | 488, 922 |
| NlaIII | CATG | 7 cut(s) | 343, 413, 606, 711, 730, 841, 1202 |
| NlaIV | GGNNCC | 4 cut(s) | 210, 304, 619, 1099 |
| NmuCI | GTSAC | 2 cut(s) | 698, 994 |
| NspI | RCATGY | 1 cut(s) | 730 |
| NspV | TTCGAA | 1 cut(s) | 1188 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1101 |
| PdiI | GCCGGC | 2 cut(s) | 490, 924 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1154 |
| PfeI | GAWTC | 1 cut(s) | 343 |
| PkrI | GCNGC | 6 cut(s) | 323, 326, 573, 694, 740, 1102 |
| PleI | GAGTC | 2 cut(s) | 725, 1205 |
| PpsI | GAGTC | 2 cut(s) | 725, 1205 |
| PshBI | ATTAAT | 1 cut(s) | 915 |
| Psp6I | CCWGG | 2 cut(s) | 274, 885 |
| PspFI | CCCAGC | 2 cut(s) | 703, 722 |
| PspGI | CCWGG | 2 cut(s) | 274, 885 |
| PspN4I | GGNNCC | 4 cut(s) | 210, 304, 619, 1099 |
| PspPI | GGNCC | 7 cut(s) | 303, 359, 371, 664, 694, 740, 1205 |
| PstI | CTGCAG | 1 cut(s) | 323 |
| PsuI | RGATCY | 4 cut(s) | 253, 268, 1018, 1042 |
| RsaI | GTAC | 4 cut(s) | 504, 549, 556, 1107 |
| RsaNI | GTAC | 4 cut(s) | 503, 548, 555, 1106 |
| SaqAI | TTAA | 3 cut(s) | 239, 753, 915 |
| SatI | GCNGC | 6 cut(s) | 322, 325, 572, 693, 739, 1101 |
| Sau3AI | GATC | 5 cut(s) | 253, 268, 658, 1018, 1042 |
| Sau96I | GGNCC | 7 cut(s) | 303, 359, 371, 664, 694, 740, 1205 |
| SchI | GAGTC | 2 cut(s) | 726, 1205 |
| ScrFI | CCNGG | 2 cut(s) | 276, 887 |
| SduI | GDGCHC | 3 cut(s) | 936, 1093, 1245 |
| SfaNI | GCATC | 2 cut(s) | 379, 426 |
| SfcI | CTRYAG | 1 cut(s) | 319 |
| SfuI | TTCGAA | 1 cut(s) | 1188 |
| SinI | GGWCC | 4 cut(s) | 303, 359, 664, 1205 |
| Sse9I | AATT | 4 cut(s) | 236, 623, 1115, 1183 |
| SspMI | CTAG | 3 cut(s) | 636, 767, 971 |
| StyD4I | CCNGG | 2 cut(s) | 274, 885 |
| StyI | CCWWGG | 3 cut(s) | 158, 733, 873 |
| TaaI | ACNGT | 4 cut(s) | 14, 797, 956, 1180 |
| TaqI | TCGA | 3 cut(s) | 1119, 1125, 1188 |
| TasI | AATT | 4 cut(s) | 236, 623, 1115, 1183 |
| TatI | WGTACW | 1 cut(s) | 502 |
| TauI | GCSGC | 5 cut(s) | 327, 574, 695, 741, 1103 |
| TfiI | GAWTC | 1 cut(s) | 343 |
| Tru1I | TTAA | 3 cut(s) | 239, 753, 915 |
| Tru9I | TTAA | 3 cut(s) | 239, 753, 915 |
| TscAI | CASTG | 1 cut(s) | 1165 |
| TseFI | GTSAC | 2 cut(s) | 698, 994 |
| TseI | GCWGC | 1 cut(s) | 321 |
| Tsp45I | GTSAC | 2 cut(s) | 698, 994 |
| TspDTI | ATGAA | 6 cut(s) | 356, 464, 516, 851, 894, 1163 |
| TspGWI | ACGGA | 2 cut(s) | 336, 468 |
| TspRI | CASTG | 1 cut(s) | 1165 |
| VpaK11BI | GGWCC | 4 cut(s) | 303, 359, 664, 1205 |
| VspI | ATTAAT | 1 cut(s) | 915 |
| XceI | RCATGY | 1 cut(s) | 730 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1154 |
| XspI | CTAG | 3 cut(s) | 636, 767, 971 |