RNA binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 294 |
| Acc36I | ACCTGC | 1 cut(s) | 390 |
| AcoI | YGGCCR | 1 cut(s) | 115 |
| AcsI | RAATTY | 2 cut(s) | 548, 593 |
| AcyI | GRCGYC | 2 cut(s) | 291, 436 |
| AfaI | GTAC | 1 cut(s) | 92 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 152, 388 |
| AgsI | TTSAA | 3 cut(s) | 668, 674, 749 |
| AhlI | ACTAGT | 1 cut(s) | 319 |
| AjnI | CCWGG | 1 cut(s) | 375 |
| AleI | CACNNNNGTG | 1 cut(s) | 689 |
| AluBI | AGCT | 4 cut(s) | 28, 76, 499, 744 |
| AluI | AGCT | 4 cut(s) | 28, 76, 499, 744 |
| Alw26I | GTCTC | 3 cut(s) | 9, 310, 637 |
| AoxI | GGCC | 2 cut(s) | 115, 343 |
| ApeKI | GCWGC | 1 cut(s) | 741 |
| ApoI | RAATTY | 2 cut(s) | 548, 593 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 616 |
| AspS9I | GGNCC | 2 cut(s) | 344, 379 |
| AsuC2I | CCSGG | 2 cut(s) | 302, 338 |
| AsuHPI | GGTGA | 5 cut(s) | 229, 290, 506, 580, 676 |
| AvaII | GGWCC | 1 cut(s) | 379 |
| BbvI | GCAGC | 1 cut(s) | 753 |
| BccI | CCATC | 3 cut(s) | 61, 126, 772 |
| BciT130I | CCWGG | 1 cut(s) | 377 |
| BcnI | CCSGG | 2 cut(s) | 302, 338 |
| BcoDI | GTCTC | 3 cut(s) | 9, 310, 637 |
| BcuI | ACTAGT | 1 cut(s) | 319 |
| BfaI | CTAG | 1 cut(s) | 320 |
| BfmI | CTRYAG | 2 cut(s) | 103, 383 |
| BfuAI | ACCTGC | 1 cut(s) | 390 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 342 |
| BisI | GCNGC | 1 cut(s) | 742 |
| BlsI | GCNGC | 1 cut(s) | 743 |
| Bme1390I | CCNGG | 3 cut(s) | 302, 338, 377 |
| Bme18I | GGWCC | 1 cut(s) | 379 |
| BmgT120I | GGNCC | 2 cut(s) | 344, 379 |
| BmrFI | CCNGG | 3 cut(s) | 302, 338, 377 |
| BmsI | GCATC | 2 cut(s) | 22, 495 |
| BpuMI | CCSGG | 2 cut(s) | 302, 338 |
| BsaHI | GRCGYC | 2 cut(s) | 291, 436 |
| BsaJI | CCNNGG | 3 cut(s) | 337, 431, 687 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 152, 388 |
| Bse118I | RCCGGY | 2 cut(s) | 239, 508 |
| Bse1I | ACTGG | 1 cut(s) | 275 |
| BseBI | CCWGG | 1 cut(s) | 377 |
| BseDI | CCNNGG | 3 cut(s) | 337, 431, 687 |
| BseGI | GGATG | 2 cut(s) | 118, 764 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 152, 388 |
| BseNI | ACTGG | 1 cut(s) | 275 |
| BseXI | GCAGC | 1 cut(s) | 753 |
| BsgI | GTGCAG | 2 cut(s) | 672, 762 |
| BshFI | GGCC | 2 cut(s) | 117, 345 |
| BsiSI | CCGG | 4 cut(s) | 240, 302, 337, 509 |
| BslFI | GGGAC | 2 cut(s) | 308, 404 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 152, 388 |
| BsmAI | GTCTC | 3 cut(s) | 9, 310, 637 |
| BsmFI | GGGAC | 2 cut(s) | 308, 404 |
| BsnI | GGCC | 2 cut(s) | 117, 345 |
| BspANI | GGCC | 2 cut(s) | 117, 345 |
| BspMAI | CTGCAG | 1 cut(s) | 387 |
| BspMI | ACCTGC | 1 cut(s) | 390 |
| BspQI | GCTCTTC | 1 cut(s) | 205 |
| BsrFI | RCCGGY | 2 cut(s) | 239, 508 |
| BsrI | ACTGG | 1 cut(s) | 275 |
| BssAI | RCCGGY | 2 cut(s) | 239, 508 |
| BssECI | CCNNGG | 3 cut(s) | 337, 431, 687 |
| BssNI | GRCGYC | 2 cut(s) | 291, 436 |
| BssT1I | CCWWGG | 2 cut(s) | 431, 687 |
| Bst2UI | CCWGG | 1 cut(s) | 377 |
| Bst4CI | ACNGT | 3 cut(s) | 90, 626, 790 |
| Bst6I | CTCTTC | 2 cut(s) | 205, 741 |
| BstACI | GRCGYC | 2 cut(s) | 291, 436 |
| BstC8I | GCNNGC | 3 cut(s) | 78, 82, 577 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 150 |
| BstF5I | GGATG | 2 cut(s) | 118, 764 |
| BstMAI | GTCTC | 3 cut(s) | 9, 310, 637 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 342, 505, 514 |
| BstNI | CCWGG | 1 cut(s) | 377 |
| BstSCI | CCNGG | 3 cut(s) | 300, 336, 375 |
| BstSFI | CTRYAG | 2 cut(s) | 103, 383 |
| BstV1I | GCAGC | 1 cut(s) | 753 |
| BsuRI | GGCC | 2 cut(s) | 117, 345 |
| BtsCI | GGATG | 2 cut(s) | 118, 764 |
| BtsIMutI | CAGTG | 1 cut(s) | 282 |
| BveI | ACCTGC | 1 cut(s) | 390 |
| Cac8I | GCNNGC | 3 cut(s) | 78, 82, 577 |
| Cfr10I | RCCGGY | 2 cut(s) | 239, 508 |
| Cfr13I | GGNCC | 2 cut(s) | 344, 379 |
| CseI | GACGC | 1 cut(s) | 425 |
| Csp6I | GTAC | 1 cut(s) | 91 |
| CviAII | CATG | 4 cut(s) | 215, 263, 454, 730 |
| CviQI | GTAC | 1 cut(s) | 91 |
| EaeI | YGGCCR | 1 cut(s) | 115 |
| Eam1104I | CTCTTC | 2 cut(s) | 205, 741 |
| EarI | CTCTTC | 2 cut(s) | 205, 741 |
| Eco130I | CCWWGG | 2 cut(s) | 431, 687 |
| Eco32I | GATATC | 1 cut(s) | 682 |
| Eco47I | GGWCC | 1 cut(s) | 379 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 150 |
| EcoRI | GAATTC | 1 cut(s) | 593 |
| EcoRII | CCWGG | 1 cut(s) | 375 |
| EcoRV | GATATC | 1 cut(s) | 682 |
| EcoT14I | CCWWGG | 2 cut(s) | 431, 687 |
| ErhI | CCWWGG | 2 cut(s) | 431, 687 |
| FaeI | CATG | 4 cut(s) | 218, 266, 457, 733 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 564, 596 |
| FaqI | GGGAC | 2 cut(s) | 308, 404 |
| FatI | CATG | 4 cut(s) | 214, 262, 453, 729 |
| Fnu4HI | GCNGC | 1 cut(s) | 742 |
| FokI | GGATG | 2 cut(s) | 105, 751 |
| Fsp4HI | GCNGC | 1 cut(s) | 742 |
| FspBI | CTAG | 1 cut(s) | 320 |
| GluI | GCNGC | 1 cut(s) | 742 |
| HaeIII | GGCC | 2 cut(s) | 117, 345 |
| HapII | CCGG | 4 cut(s) | 240, 302, 337, 509 |
| HgaI | GACGC | 1 cut(s) | 425 |
| Hin1I | GRCGYC | 2 cut(s) | 291, 436 |
| Hin1II | CATG | 4 cut(s) | 218, 266, 457, 733 |
| HincII | GTYRAC | 1 cut(s) | 481 |
| HindII | GTYRAC | 1 cut(s) | 481 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| HpaI | GTTAAC | 1 cut(s) | 481 |
| HpaII | CCGG | 4 cut(s) | 240, 302, 337, 509 |
| HphI | GGTGA | 5 cut(s) | 229, 290, 506, 580, 676 |
| Hpy166II | GTNNAC | 3 cut(s) | 170, 481, 694 |
| Hpy188I | TCNGA | 2 cut(s) | 466, 622 |
| Hpy8I | GTNNAC | 3 cut(s) | 170, 481, 694 |
| Hpy99I | CGWCG | 1 cut(s) | 296 |
| HpyAV | CCTTC | 2 cut(s) | 158, 364 |
| HpyCH4III | ACNGT | 3 cut(s) | 90, 626, 790 |
| HpyCH4IV | ACGT | 1 cut(s) | 291 |
| HpyCH4V | TGCA | 5 cut(s) | 58, 385, 556, 653, 779 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 342, 505, 514 |
| HpySE526I | ACGT | 1 cut(s) | 291 |
| Hsp92I | GRCGYC | 2 cut(s) | 291, 436 |
| Hsp92II | CATG | 4 cut(s) | 218, 266, 457, 733 |
| KspAI | GTTAAC | 1 cut(s) | 481 |
| LguI | GCTCTTC | 1 cut(s) | 205 |
| LmnI | GCTCC | 1 cut(s) | 73 |
| Lsp1109I | GCAGC | 1 cut(s) | 753 |
| LweI | GCATC | 2 cut(s) | 22, 495 |
| MaeI | CTAG | 1 cut(s) | 320 |
| MaeII | ACGT | 1 cut(s) | 291 |
| MaeIII | GTNAC | 3 cut(s) | 218, 566, 586 |
| MboII | GAAGA | 2 cut(s) | 192, 728 |
| MluCI | AATT | 8 cut(s) | 8, 37, 524, 548, 593, 668, 709, 725 |
| MnlI | CCTC | 8 cut(s) | 41, 127, 132, 136, 189, 268, 557, 744 |
| MroXI | GAANNNNTTC | 1 cut(s) | 616 |
| MseI | TTAA | 3 cut(s) | 12, 480, 716 |
| MslI | CAYNNNNRTG | 2 cut(s) | 248, 689 |
| MspI | CCGG | 4 cut(s) | 240, 302, 337, 509 |
| MspR9I | CCNGG | 3 cut(s) | 302, 338, 377 |
| MvaI | CCWGG | 1 cut(s) | 377 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 342, 505, 514 |
| NciI | CCSGG | 2 cut(s) | 302, 338 |
| NlaIII | CATG | 4 cut(s) | 218, 266, 457, 733 |
| NmuCI | GTSAC | 2 cut(s) | 566, 586 |
| OliI | CACNNNNGTG | 1 cut(s) | 689 |
| PciSI | GCTCTTC | 1 cut(s) | 205 |
| PdmI | GAANNNNTTC | 1 cut(s) | 616 |
| PfoI | TCCNGGA | 1 cut(s) | 375 |
| PkrI | GCNGC | 1 cut(s) | 743 |
| Psp6I | CCWGG | 1 cut(s) | 375 |
| PspGI | CCWGG | 1 cut(s) | 375 |
| PspPI | GGNCC | 2 cut(s) | 344, 379 |
| PstI | CTGCAG | 1 cut(s) | 387 |
| RsaI | GTAC | 1 cut(s) | 92 |
| RsaNI | GTAC | 1 cut(s) | 91 |
| RseI | CAYNNNNRTG | 2 cut(s) | 248, 689 |
| SapI | GCTCTTC | 1 cut(s) | 205 |
| SaqAI | TTAA | 3 cut(s) | 12, 480, 716 |
| SatI | GCNGC | 1 cut(s) | 742 |
| Sau96I | GGNCC | 2 cut(s) | 344, 379 |
| SbfI | CCTGCAGG | 1 cut(s) | 387 |
| ScrFI | CCNGG | 3 cut(s) | 302, 338, 377 |
| SdaI | CCTGCAGG | 1 cut(s) | 387 |
| SfaNI | GCATC | 2 cut(s) | 22, 495 |
| SfcI | CTRYAG | 2 cut(s) | 103, 383 |
| SinI | GGWCC | 1 cut(s) | 379 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 248, 689 |
| SpeI | ACTAGT | 1 cut(s) | 319 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 387 |
| Sse9I | AATT | 8 cut(s) | 8, 37, 524, 548, 593, 668, 709, 725 |
| SspMI | CTAG | 1 cut(s) | 320 |
| StyD4I | CCNGG | 3 cut(s) | 300, 336, 375 |
| StyI | CCWWGG | 2 cut(s) | 431, 687 |
| TaaI | ACNGT | 3 cut(s) | 90, 626, 790 |
| TaiI | ACGT | 1 cut(s) | 294 |
| TaqI | TCGA | 2 cut(s) | 357, 597 |
| TasI | AATT | 8 cut(s) | 8, 37, 524, 548, 593, 668, 709, 725 |
| Tru1I | TTAA | 3 cut(s) | 12, 480, 716 |
| Tru9I | TTAA | 3 cut(s) | 12, 480, 716 |
| TscAI | CASTG | 1 cut(s) | 282 |
| TseFI | GTSAC | 2 cut(s) | 566, 586 |
| TseI | GCWGC | 1 cut(s) | 741 |
| Tsp45I | GTSAC | 2 cut(s) | 566, 586 |
| TspDTI | ATGAA | 6 cut(s) | 192, 225, 246, 279, 537, 718 |
| TspGWI | ACGGA | 1 cut(s) | 593 |
| TspRI | CASTG | 1 cut(s) | 282 |
| VpaK11BI | GGWCC | 1 cut(s) | 379 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 150 |
| XapI | RAATTY | 2 cut(s) | 548, 593 |
| XmnI | GAANNNNTTC | 1 cut(s) | 616 |
| XspI | CTAG | 1 cut(s) | 320 |
| ZraI | GACGTC | 1 cut(s) | 292 |