Rh4BG051100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000213
Physical Location & Seq
Forward (+)
9136405 .. 9139912
3508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG051100.1

Sequence Viewer

Length: 417 bp
ATGTCCTCCCAAAAACAGCTTGACCTACCCACCAGCGACGGCGAAGAGGAGAGGCAGCAACACCCGCTCCGGAAGACCAAAGAGAAGTTGATGTGGGAGTTGGAGCTGGAGGAGGGTGATAAGTCACTCTACATGTGTTGTCTAGAGCACAGGAGCGACTGGGTGGCTTATGTTGTCCACGCCATCAAACTGTCGGATTTGTTATCATATTCGGCGGTGGGGGACGAGCCACCGCGATTACGGCAAGTGGCTTATAAGGCCGGGTCGCATCTCCCCGGCTCTGTGGGTTGCGGTGTTTGGGGATCCCAAATTGTTTTCACCGGCGGCGTGACACCCAGCTCCCCTTTCGGCTTCAGGACAATAGGTCCTGACTCAGTTTGGCATACAAATAACTTAGAAGGAGCAATAAGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.33

Weight (kDa)

5.62

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 67
AccII CGCG 1 cut(s) 235
AccIII TCCGGA 1 cut(s) 69
AciI CCGC 5 cut(s) 65, 215, 233, 291, 324
AclWI GGATC 2 cut(s) 297, 310
AcuI CTGAAG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 132
AhdI GACNNNNNGTC 1 cut(s) 363
AluBI AGCT 3 cut(s) 19, 106, 339
AluI AGCT 3 cut(s) 19, 106, 339
Alw21I GWGCWC 1 cut(s) 150
AlwI GGATC 2 cut(s) 297, 310
Aor13HI TCCGGA 1 cut(s) 69
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 2 cut(s) 262, 276
AsuHPI GGTGA 2 cut(s) 128, 310
AvaII GGWCC 1 cut(s) 365
BamHI GGATCC 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 191
BceAI ACGGC 2 cut(s) 55, 257
BcnI CCSGG 2 cut(s) 262, 276
BfaI CTAG 1 cut(s) 143
BisI GCNGC 2 cut(s) 56, 325
BlsI GCNGC 2 cut(s) 57, 326
Bme1390I CCNGG 2 cut(s) 262, 276
Bme18I GGWCC 1 cut(s) 365
BmeRI GACNNNNNGTC 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 2 cut(s) 262, 276
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 277
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 128
BpuMI CCSGG 2 cut(s) 262, 276
BsaJI CCNNGG 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 164
BseAI TCCGGA 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 2 cut(s) 62, 125
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 4 cut(s) 70, 261, 276, 321
BslFI GGGAC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 150
Bsp13I TCCGGA 1 cut(s) 69
Bsp143I GATC 1 cut(s) 302
BspACI CCGC 5 cut(s) 65, 215, 233, 291, 324
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 1 cut(s) 386
BspEI TCCGGA 1 cut(s) 69
BspFNI CGCG 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 304
BspPI GGATC 2 cut(s) 297, 310
BsrBI CCGCTC 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 373, 394
BstFNI CGCG 1 cut(s) 235
BstKTI GATC 1 cut(s) 305
BstMBI GATC 1 cut(s) 302
BstMWI GCNNNNNNNGC 3 cut(s) 64, 241, 257
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 260, 274
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 365
CviAII CATG 1 cut(s) 133
CviJI RGCY 9 cut(s) 19, 106, 167, 229, 251, 260, 279, 339, 351
CviKI_1 RGCY 9 cut(s) 19, 106, 167, 229, 251, 260, 279, 339, 351
DdeI CTNAG 2 cut(s) 373, 394
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
DriI GACNNNNNGTC 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 39
Eam1105I GACNNNNNGTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 365
FaeI CATG 1 cut(s) 136
FaiI YATR 5 cut(s) 134, 171, 208, 255, 384
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 132
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 56, 325
Fsp4HI GCNGC 2 cut(s) 56, 325
FspBI CTAG 1 cut(s) 143
GluI GCNGC 2 cut(s) 56, 325
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 260
HapII CCGG 4 cut(s) 70, 261, 276, 321
Hin1II CATG 1 cut(s) 136
HinfI GANTC 1 cut(s) 371
HpaII CCGG 4 cut(s) 70, 261, 276, 321
HphI GGTGA 2 cut(s) 128, 310
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 4 cut(s) 70, 143, 355, 368
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 241, 257
HpyF3I CTNAG 2 cut(s) 373, 394
Hsp92II CATG 1 cut(s) 136
Kpn2I TCCGGA 1 cut(s) 69
Kzo9I GATC 1 cut(s) 302
LmnI GCTCC 5 cut(s) 72, 103, 153, 344, 401
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 143
MaeIII GTNAC 2 cut(s) 123, 328
MalI GATC 1 cut(s) 304
MbiI CCGCTC 1 cut(s) 67
MboI GATC 1 cut(s) 302
MboII GAAGA 2 cut(s) 56, 85
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 1 cut(s) 309
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 2 cut(s) 81, 174
MnlI CCTC 5 cut(s) 16, 40, 45, 103, 106
MroI TCCGGA 1 cut(s) 69
MseI TTAA 1 cut(s) 415
MspI CCGG 4 cut(s) 70, 261, 276, 321
MspR9I CCNGG 2 cut(s) 262, 276
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 3 cut(s) 64, 241, 257
NciI CCSGG 2 cut(s) 262, 276
NdeII GATC 1 cut(s) 302
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 2 cut(s) 123, 328
NspI RCATGY 1 cut(s) 136
PciI ACATGT 1 cut(s) 132
PkrI GCNGC 2 cut(s) 57, 326
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 365
PscI ACATGT 1 cut(s) 132
PsiI TTATAA 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 365
PspFI CCCAGC 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 365
PspPPI RGGWCCY 1 cut(s) 365
PsuI RGATCY 1 cut(s) 302
SaqAI TTAA 1 cut(s) 415
SatI GCNGC 2 cut(s) 56, 325
Sau3AI GATC 1 cut(s) 302
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 262, 276
SduI GDGCHC 1 cut(s) 150
SetI ASST 5 cut(s) 21, 27, 108, 341, 367
SfaNI GCATC 1 cut(s) 277
SgrAI CRCCGGYG 1 cut(s) 320
SinI GGWCC 1 cut(s) 365
Sse9I AATT 1 cut(s) 309
SsiI CCGC 5 cut(s) 65, 215, 233, 291, 324
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 260, 274
TaaI ACNGT 1 cut(s) 192
TasI AATT 1 cut(s) 309
TauI GCSGC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 415
Tru9I TTAA 1 cut(s) 415
TseFI GTSAC 2 cut(s) 123, 328
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 2 cut(s) 123, 328
VpaK11BI GGWCC 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 1 cut(s) 136
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.