Rroxscaffold_2G00150990

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000213
Physical Location & Seq
Reverse (-)
88324722 .. 88326076
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150990.1

Sequence Viewer

Length: 1257 bp
ATGTCCCCCACAACCACTCTCAACCTAGCCAACAGATCCAGCGATGGCAAAGACGAACGGCGTCATCGGCTTCGACGCTGCCTTGAACCACCGCATCATAAGGTTGATAAGCACAGGAAGTCTAAGAAGAGAAGTGAGAAGTTGAAGTTGAAGTTGAACGAGGAGGAGGCTAACAAGTCTCTGTACATATGTCACATTGAGCACCACCCTGGAAGGTGGGTCGCTTATGTTGTCCGCGCCATCAACTTGTCCGATTTGTTGTTGTCATCAGAAGATGATGATAGTTTGCAATTACGGCAAGTGGGTTATAAGGCCGGGGATGAACTCCCGGGTTCTGTGGGTTGTGGTGTGTGGGGCTCCCGGATTGTTTTCGCCGCCGGCATGAAACCCTGCGGCCGTATGCCTTCATTTGATCGTCCCGACATAGTTTGGCATAGAGATGTTTACGCCTTTGAAACGGACCCCAACAAGCACAAGCAGCCTCGTGATAATAGTAGAATTACCAAGATGGGTGGCACATTAGTTGAAGCCAAGTTTCGTCCTCTGATGGAGGAGGTGGGGGGCAAACTGTATGCACTTTCATTTAGGCTGGTGGCTGATCCTCCCTCATTTGAGGTATTCGACCCGAAAGTGGGGAGTTGGGCGCCTCTGCCTCAGCCTCCATTCTTCAAACGTCATGGTCAGTATAACCGCGGTGGCTTCCTCTCTTATGCTGGCACCAAGATGTTTGTGTCTCAGGAGAGATGTCCTGTCTTCTGTTTCGATGTAGCTCACCCAGACAGAGAATGGAGATTAGTCTCTTCTATGTGCCAATGCGGCCCTTTTCCTTTTAAAAACAAAGCTTTGGTCCTGGACCTGCCCACGGGTGCTTACGACAAGAAGAAGATAATGTTTGCCTATAGTTTTGAAAATCAAGAATCTATCACACGAATTGGTGATTTGGAGCTGCCAAGTTTGCCTCAGGAATATGAATTTGCAAAAAGATGTTATTTTGTCCATATAGGAGGTCAGAAAGCCTGCATTGTTGCCCCCGAATTGGTTATGCCTTCTAAACAAGGACCTGATATTAACGAGGCTGGGACTCATAGGACACGGGGTGTTGCCATACCATTTCAATTTGAAGTTGATATCACCAAGGTCAACAAGGACGAGAAGAATTGTTTGACCCTCCAATTCATGCCTACTCGTATCTTCGAATTCTATACCAACCCATCCACTTTTCCTGATCCTGAAGCATATGGTTGCTTTGTGCTGTAA

Protein Analysis

418

Amino Acids

47.67

Weight (kDa)

8.86

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 172 - 294 1.9e-09 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 864
AccB1I GGYRCC 2 cut(s) 643, 716
AccII CGCG 2 cut(s) 237, 693
AciI CCGC 7 cut(s) 92, 235, 375, 393, 691, 693, 816
AclWI GGATC 3 cut(s) 30, 593, 1220
AcoI YGGCCR 1 cut(s) 394
AcsI RAATTY 2 cut(s) 971, 1196
AcuI CTGAAG 1 cut(s) 1251
AcyI GRCGYC 2 cut(s) 61, 644
AdeI CACNNNGTG 1 cut(s) 1097
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 4 cut(s) 631, 632, 862, 1036
AjnI CCWGG 2 cut(s) 208, 849
AluBI AGCT 3 cut(s) 770, 842, 946
AluI AGCT 3 cut(s) 770, 842, 946
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 3 cut(s) 183, 738, 802
AlwI GGATC 3 cut(s) 30, 593, 1220
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 3 cut(s) 312, 394, 817
ApeKI GCWGC 3 cut(s) 78, 478, 946
ApoI RAATTY 2 cut(s) 971, 1196
ArsI GACNNNNNNTTYG 2 cut(s) 831, 863
AspLEI GCGC 2 cut(s) 239, 646
AspS9I GGNCC 5 cut(s) 460, 818, 847, 853, 1058
AsuC2I CCSGG 4 cut(s) 316, 329, 330, 361
AsuHPI GGTGA 3 cut(s) 764, 947, 1123
AsuII TTCGAA 1 cut(s) 1194
AvaI CYCGRG 1 cut(s) 328
AvaII GGWCC 4 cut(s) 460, 847, 853, 1058
AxyI CCTNAGG 1 cut(s) 960
BanI GGYRCC 2 cut(s) 643, 716
BanII GRGCYC 1 cut(s) 359
BauI CACGAG 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 745
Bbv12I GWGCWC 1 cut(s) 204
BbvCI CCTCAGC 1 cut(s) 654
BbvI GCAGC 3 cut(s) 65, 490, 933
BccI CCATC 5 cut(s) 38, 248, 502, 541, 1219
BceAI ACGGC 3 cut(s) 74, 311, 381
BciT130I CCWGG 2 cut(s) 210, 851
BcnI CCSGG 4 cut(s) 316, 329, 330, 361
BcoDI GTCTC 3 cut(s) 183, 738, 802
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 898
BfoI RGCGCY 1 cut(s) 647
BfuAI ACCTGC 1 cut(s) 864
BglI GCCNNNNNGGC 1 cut(s) 816
BisI GCNGC 6 cut(s) 79, 375, 394, 479, 817, 947
BlsI GCNGC 6 cut(s) 80, 376, 395, 480, 818, 948
Bme1390I CCNGG 6 cut(s) 210, 316, 329, 330, 361, 851
Bme18I GGWCC 4 cut(s) 460, 847, 853, 1058
BmeT110I CYCGRG 1 cut(s) 328
BmgT120I GGNCC 5 cut(s) 460, 818, 847, 853, 1058
BmiI GGNNCC 4 cut(s) 358, 462, 645, 718
BmrFI CCNGG 6 cut(s) 210, 316, 329, 330, 361, 851
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 745
Bpu10I CCTNAGC 1 cut(s) 654
Bpu14I TTCGAA 1 cut(s) 1194
BpuMI CCSGG 4 cut(s) 316, 329, 330, 361
BsaHI GRCGYC 2 cut(s) 61, 644
BsaJI CCNNGG 6 cut(s) 208, 315, 328, 691, 861, 1134
Bsc4I CCNNNNNNNGG 4 cut(s) 631, 632, 862, 1036
Bse118I RCCGGY 1 cut(s) 377
Bse21I CCTNAGG 1 cut(s) 960
BseBI CCWGG 2 cut(s) 210, 851
BseDI CCNNGG 6 cut(s) 208, 315, 328, 691, 861, 1134
BseGI GGATG 2 cut(s) 325, 1211
BseLI CCNNNNNNNGG 4 cut(s) 631, 632, 862, 1036
BseMII CTCAG 3 cut(s) 668, 749, 974
BseRI GAGGAG 3 cut(s) 176, 179, 566
BseX3I CGGCCG 1 cut(s) 394
BseXI GCAGC 3 cut(s) 65, 490, 933
BseYI CCCAGC 1 cut(s) 1076
Bsh1236I CGCG 2 cut(s) 237, 693
Bsh1285I CGRYCG 1 cut(s) 397
BshFI GGCC 3 cut(s) 314, 396, 819
BshNI GGYRCC 2 cut(s) 643, 716
BsiEI CGRYCG 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 4 cut(s) 315, 329, 361, 378
BslFI GGGAC 2 cut(s) 402, 1093
BslI CCNNNNNNNGG 4 cut(s) 631, 632, 862, 1036
BsmAI GTCTC 3 cut(s) 183, 738, 802
BsmFI GGGAC 2 cut(s) 402, 1093
BsnI GGCC 3 cut(s) 314, 396, 819
BsoBI CYCGRG 1 cut(s) 328
Bsp119I TTCGAA 1 cut(s) 1194
Bsp1286I GDGCHC 2 cut(s) 204, 359
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 4 cut(s) 35, 412, 598, 1225
BspACI CCGC 7 cut(s) 92, 235, 375, 393, 691, 693, 816
BspANI GGCC 3 cut(s) 314, 396, 819
BspCNI CTCAG 3 cut(s) 667, 748, 973
BspFNI CGCG 2 cut(s) 237, 693
BspLI GGNNCC 4 cut(s) 358, 462, 645, 718
BspMI ACCTGC 1 cut(s) 864
BspPI GGATC 3 cut(s) 30, 593, 1220
BspT104I TTCGAA 1 cut(s) 1194
BspT107I GGYRCC 2 cut(s) 643, 716
BsrFI RCCGGY 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 6 cut(s) 208, 315, 328, 691, 861, 1134
BssMI GATC 4 cut(s) 35, 412, 598, 1225
BssNI GRCGYC 2 cut(s) 61, 644
BssSI CACGAG 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 1134
Bst2BI CACGAG 1 cut(s) 483
Bst2UI CCWGG 2 cut(s) 210, 851
Bst4CI ACNGT 1 cut(s) 570
Bst6I CTCTTC 2 cut(s) 122, 805
BstACI GRCGYC 2 cut(s) 61, 644
BstAUI TGTACA 1 cut(s) 183
BstBI TTCGAA 1 cut(s) 1194
BstC8I GCNNGC 3 cut(s) 379, 715, 1018
BstDEI CTNAG 4 cut(s) 123, 654, 735, 960
BstDSI CCRYGG 2 cut(s) 691, 861
BstF5I GGATG 2 cut(s) 325, 1211
BstFNI CGCG 2 cut(s) 237, 693
BstH2I RGCGCY 1 cut(s) 647
BstHHI GCGC 2 cut(s) 239, 646
BstKTI GATC 4 cut(s) 38, 415, 601, 1228
BstMAI GTCTC 3 cut(s) 183, 738, 802
BstMBI GATC 4 cut(s) 35, 412, 598, 1225
BstMCI CGRYCG 1 cut(s) 397
BstMWI GCNNNNNNNGC 5 cut(s) 67, 295, 478, 816, 955
BstNI CCWGG 2 cut(s) 210, 851
BstSCI CCNGG 6 cut(s) 208, 314, 327, 328, 359, 849
BstSFI CTRYAG 1 cut(s) 898
BstUI CGCG 2 cut(s) 237, 693
BstV1I GCAGC 3 cut(s) 65, 490, 933
BstV2I GAAGAC 1 cut(s) 745
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BstZI CGGCCG 1 cut(s) 394
Bsu36I CCTNAGG 1 cut(s) 960
BsuRI GGCC 3 cut(s) 314, 396, 819
BtgI CCRYGG 2 cut(s) 691, 861
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 325, 1211
BveI ACCTGC 1 cut(s) 864
Cac8I GCNNGC 3 cut(s) 379, 715, 1018
CfoI GCGC 2 cut(s) 239, 646
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 5 cut(s) 460, 818, 847, 853, 1058
Cfr42I CCGCGG 1 cut(s) 694
Cfr9I CCCGGG 1 cut(s) 328
CseI GACGC 2 cut(s) 50, 84
Csp6I GTAC 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 493, 528
CviAII CATG 3 cut(s) 382, 677, 1177
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 4 cut(s) 123, 654, 735, 960
DinI GGCGCC 1 cut(s) 645
DpnI GATC 4 cut(s) 37, 414, 600, 1227
DpnII GATC 4 cut(s) 35, 412, 598, 1225
DraI TTTAAA 1 cut(s) 832
DraIII CACNNNGTG 1 cut(s) 1097
EaeI YGGCCR 1 cut(s) 394
EagI CGGCCG 1 cut(s) 394
Eam1104I CTCTTC 2 cut(s) 122, 805
EarI CTCTTC 2 cut(s) 122, 805
EclXI CGGCCG 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 1134
Eco24I GRGCYC 1 cut(s) 359
Eco32I GATATC 1 cut(s) 1129
Eco47I GGWCC 4 cut(s) 460, 847, 853, 1058
Eco52I CGGCCG 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 1251
Eco81I CCTNAGG 1 cut(s) 960
Eco88I CYCGRG 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 1058
EcoRI GAATTC 1 cut(s) 1196
EcoRII CCWGG 2 cut(s) 208, 849
EcoRV GATATC 1 cut(s) 1129
EcoT14I CCWWGG 1 cut(s) 1134
EcoT38I GRGCYC 1 cut(s) 359
EgeI GGCGCC 1 cut(s) 645
EheI GGCGCC 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 1134
FaeI CATG 3 cut(s) 385, 680, 1180
FaqI GGGAC 2 cut(s) 402, 1093
FatI CATG 3 cut(s) 381, 676, 1176
FauNDI CATATG 2 cut(s) 188, 1237
Fnu4HI GCNGC 6 cut(s) 79, 375, 394, 479, 817, 947
FokI GGATG 2 cut(s) 332, 1198
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 6 cut(s) 79, 375, 394, 479, 817, 947
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 238, 645
GluI GCNGC 6 cut(s) 79, 375, 394, 479, 817, 947
GsaI CCCAGC 1 cut(s) 1080
HaeII RGCGCY 1 cut(s) 647
HaeIII GGCC 3 cut(s) 314, 396, 819
HapII CCGG 4 cut(s) 315, 329, 361, 378
HgaI GACGC 2 cut(s) 50, 84
HhaI GCGC 2 cut(s) 239, 646
Hin1I GRCGYC 2 cut(s) 61, 644
Hin1II CATG 3 cut(s) 385, 680, 1180
Hin6I GCGC 2 cut(s) 237, 644
HinP1I GCGC 2 cut(s) 237, 644
HincII GTYRAC 1 cut(s) 1141
HindII GTYRAC 1 cut(s) 1141
HindIII AAGCTT 1 cut(s) 840
HinfI GANTC 2 cut(s) 917, 1081
HpaII CCGG 4 cut(s) 315, 329, 361, 378
HphI GGTGA 3 cut(s) 764, 947, 1123
Hpy166II GTNNAC 2 cut(s) 445, 1141
Hpy188I TCNGA 4 cut(s) 253, 271, 546, 1011
Hpy188III TCNNGA 7 cut(s) 419, 485, 737, 914, 962, 1223, 1229
Hpy8I GTNNAC 2 cut(s) 445, 1141
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 3 cut(s) 207, 414, 1056
HpyCH4III ACNGT 1 cut(s) 570
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 4 cut(s) 289, 575, 977, 1020
HpyF10VI GCNNNNNNNGC 5 cut(s) 67, 295, 478, 816, 955
HpyF3I CTNAG 4 cut(s) 123, 654, 735, 960
HpySE526I ACGT 1 cut(s) 673
Hsp92I GRCGYC 2 cut(s) 61, 644
Hsp92II CATG 3 cut(s) 385, 680, 1180
HspAI GCGC 2 cut(s) 237, 644
KasI GGCGCC 1 cut(s) 643
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
KspI CCGCGG 1 cut(s) 694
Kzo9I GATC 4 cut(s) 35, 412, 598, 1225
LmnI GCTCC 2 cut(s) 362, 943
Lsp1109I GCAGC 3 cut(s) 65, 490, 933
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 1 cut(s) 191
MalI GATC 4 cut(s) 37, 414, 600, 1227
MboI GATC 4 cut(s) 35, 412, 598, 1225
MboII GAAGA 9 cut(s) 139, 284, 658, 745, 792, 892, 895, 1165, 1183
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 204, 359
MluCI AATT 9 cut(s) 290, 498, 930, 971, 1034, 1115, 1156, 1172, 1196
Mly113I GGCGCC 1 cut(s) 644
MlyI GAGTC 1 cut(s) 1075
MroNI GCCGGC 1 cut(s) 377
MseI TTAA 2 cut(s) 831, 1068
MslI CAYNNNNRTG 2 cut(s) 438, 722
MspA1I CMGCKG 1 cut(s) 693
MspI CCGG 4 cut(s) 315, 329, 361, 378
MspR9I CCNGG 6 cut(s) 210, 316, 329, 330, 361, 851
MvaI CCWGG 2 cut(s) 210, 851
MvnI CGCG 2 cut(s) 237, 693
MwoI GCNNNNNNNGC 5 cut(s) 67, 295, 478, 816, 955
NaeI GCCGGC 1 cut(s) 379
NarI GGCGCC 1 cut(s) 644
NciI CCSGG 4 cut(s) 316, 329, 330, 361
NdeI CATATG 2 cut(s) 188, 1237
NdeII GATC 4 cut(s) 35, 412, 598, 1225
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 3 cut(s) 385, 680, 1180
NlaIV GGNNCC 4 cut(s) 358, 462, 645, 718
NmuCI GTSAC 1 cut(s) 191
NspV TTCGAA 1 cut(s) 1194
PdiI GCCGGC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 917
PfoI TCCNGGA 2 cut(s) 359, 849
PkrI GCNGC 6 cut(s) 80, 376, 395, 480, 818, 948
PleI GAGTC 1 cut(s) 1075
PluTI GGCGCC 1 cut(s) 647
PpsI GAGTC 1 cut(s) 1075
PpuMI RGGWCCY 1 cut(s) 1058
PsiI TTATAA 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 1058
Psp6I CCWGG 2 cut(s) 208, 849
PspFI CCCAGC 1 cut(s) 1076
PspGI CCWGG 2 cut(s) 208, 849
PspN4I GGNNCC 4 cut(s) 358, 462, 645, 718
PspPI GGNCC 5 cut(s) 460, 818, 847, 853, 1058
PspPPI RGGWCCY 1 cut(s) 1058
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 2 cut(s) 438, 722
SacII CCGCGG 1 cut(s) 694
SaqAI TTAA 2 cut(s) 831, 1068
SatI GCNGC 6 cut(s) 79, 375, 394, 479, 817, 947
Sau3AI GATC 4 cut(s) 35, 412, 598, 1225
Sau96I GGNCC 5 cut(s) 460, 818, 847, 853, 1058
SchI GAGTC 1 cut(s) 1075
ScrFI CCNGG 6 cut(s) 210, 316, 329, 330, 361, 851
SduI GDGCHC 2 cut(s) 204, 359
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 898
SfoI GGCGCC 1 cut(s) 645
Sfr303I CCGCGG 1 cut(s) 694
SfuI TTCGAA 1 cut(s) 1194
SgrBI CCGCGG 1 cut(s) 694
SinI GGWCC 4 cut(s) 460, 847, 853, 1058
SmaI CCCGGG 1 cut(s) 330
SmiMI CAYNNNNRTG 2 cut(s) 438, 722
Sse9I AATT 9 cut(s) 290, 498, 930, 971, 1034, 1115, 1156, 1172, 1196
SsiI CCGC 7 cut(s) 92, 235, 375, 393, 691, 693, 816
SspDI GGCGCC 1 cut(s) 643
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 6 cut(s) 208, 314, 327, 328, 359, 849
StyI CCWWGG 1 cut(s) 1134
TaaI ACNGT 1 cut(s) 570
TaiI ACGT 1 cut(s) 676
TaqI TCGA 4 cut(s) 73, 621, 762, 1194
TasI AATT 9 cut(s) 290, 498, 930, 971, 1034, 1115, 1156, 1172, 1196
TatI WGTACW 1 cut(s) 183
TauI GCSGC 3 cut(s) 377, 396, 819
TfiI GAWTC 1 cut(s) 917
Tru1I TTAA 2 cut(s) 831, 1068
Tru9I TTAA 2 cut(s) 831, 1068
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 3 cut(s) 78, 478, 946
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 6 cut(s) 336, 396, 398, 570, 984, 1165
TspGWI ACGGA 1 cut(s) 473
TspMI CCCGGG 1 cut(s) 328
VpaK11BI GGWCC 4 cut(s) 460, 847, 853, 1058
XapI RAATTY 2 cut(s) 971, 1196
XcmI CCANNNNNNNNNTGG 1 cut(s) 783
XmaI CCCGGG 1 cut(s) 328
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.