Rmu_sc0002735.1_g000001

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002735.1
OG0000213
Physical Location & Seq
Forward (+)
1 .. 3026
3026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002735.1_g000001.1.cds

Sequence Viewer

Length: 888 bp
gaaactgagacagaaaacccgaaagagactcactcgtctatgtcccacaaaaaatgtcttaaattagccgaagccagcgatggcgaagaaagaaggcatcgtctggttcggcattgctgccctcttcagaagcacaggtgtgatggatgcgtgatgaagaaggagaagaagaagaaaataagagtatcagagaaggtgaagaagacaacgaagaagttgaagctggaggaggaggaggcaaagaagtcactctacatatgtttcgttgaacaacgcgagggtgggagcgtcgctattgttgttcgtaccatcaaattatccgacttgttatcctccgatgaagaattgcaattgcggcaagtggcttataaggccggggaagatgttcccgattttgttggttgtgctgttttcggctcccaaatcattttcgccggtggcgtgagccccagcttgggttccggtgacagatttccgccgataagttctgaactctggaatacagatgttcatgccttcgaggttcatgacaatgttttcaggaagatggatgcgactttacagagagggaaattttcccctatgatggtggagctgggcgggaaagtgttcgctctttcttgtgagctgatccctgatcctccatcattcgaggtatttgaccctaaaataggcctgtggaagggtttgccccaacctccatttttccaacccggatctcgatatgactctcctgcttccttcttttatgcaattgccggcaccaagatgtttgtgtcccatgacaaatgtccggtgttctgctttgatgtggcacacccagacagagaatggagactacatgtgtatctaagaagtgaaggcatctccattgggaaggttctctaa

Protein Analysis

295

Amino Acids

33.27

Weight (kDa)

8.46

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AasI GACNNNNNNGTC 1 cut(s) 34
AccB1I GGYRCC 1 cut(s) 761
AccII CGCG 1 cut(s) 276
AciI CCGC 3 cut(s) 355, 476, 600
AclWI GGATC 3 cut(s) 625, 632, 724
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 5 cut(s) 454, 455, 586, 671, 682
AflIII ACRYGT 1 cut(s) 841
AgsI TTSAA 2 cut(s) 220, 269
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 4 cut(s) 223, 453, 595, 628
AluI AGCT 4 cut(s) 223, 453, 595, 628
Alw26I GTCTC 3 cut(s) 2, 20, 829
AlwI GGATC 3 cut(s) 625, 632, 724
AoxI GGCC 2 cut(s) 372, 673
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 572
Asp700I GAANNNNTTC 2 cut(s) 384, 608
AsuC2I CCSGG 2 cut(s) 376, 714
AsuHPI GGTGA 2 cut(s) 208, 476
BaeI ACNNNNGTAYC 2 cut(s) 830, 863
BanI GGYRCC 1 cut(s) 761
BanII GRGCYC 1 cut(s) 449
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 104
BccI CCATC 6 cut(s) 74, 137, 317, 541, 580, 652
BcnI CCSGG 2 cut(s) 376, 714
BcoDI GTCTC 3 cut(s) 2, 20, 829
BisI GCNGC 2 cut(s) 118, 356
BlsI GCNGC 2 cut(s) 119, 357
Bme1390I CCNGG 2 cut(s) 376, 714
BmiI GGNNCC 3 cut(s) 418, 460, 763
BmrFI CCNGG 2 cut(s) 376, 714
BmsI GCATC 4 cut(s) 106, 137, 541, 873
BoxI GACNNNNGTC 1 cut(s) 789
BpiI GAAGAC 1 cut(s) 209
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpmI CTGGAG 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 376, 714
BsaJI CCNNGG 1 cut(s) 375
BsaWI WCCGGW 2 cut(s) 461, 793
Bsc4I CCNNNNNNNGG 5 cut(s) 454, 455, 586, 671, 682
Bse118I RCCGGY 2 cut(s) 434, 758
Bse3DI GCAATG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 2 cut(s) 152, 556
BseLI CCNNNNNNNGG 5 cut(s) 454, 455, 586, 671, 682
BseMI GCAATG 1 cut(s) 112
BseRI GAGGAG 3 cut(s) 242, 245, 248
BseXI GCAGC 1 cut(s) 104
BseYI CCCAGC 2 cut(s) 449, 595
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 374, 675
BshNI GGYRCC 1 cut(s) 761
BsiSI CCGG 6 cut(s) 375, 435, 462, 714, 759, 794
BslFI GGGAC 2 cut(s) 28, 763
BslI CCNNNNNNNGG 5 cut(s) 454, 455, 586, 671, 682
BsmAI GTCTC 3 cut(s) 2, 20, 829
BsmFI GGGAC 2 cut(s) 28, 763
BsnI GGCC 2 cut(s) 374, 675
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 3 cut(s) 630, 637, 716
BspACI CCGC 3 cut(s) 355, 476, 600
BspANI GGCC 2 cut(s) 374, 675
BspFNI CGCG 1 cut(s) 276
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 3 cut(s) 418, 460, 763
BspPI GGATC 3 cut(s) 625, 632, 724
BspT107I GGYRCC 1 cut(s) 761
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 2 cut(s) 434, 758
BssAI RCCGGY 2 cut(s) 434, 758
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 3 cut(s) 630, 637, 716
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 76, 760
BstDEI CTNAG 2 cut(s) 6, 851
BstENI CCTNNNNNAGG 2 cut(s) 669, 680
BstF5I GGATG 2 cut(s) 152, 556
BstFNI CGCG 1 cut(s) 276
BstKTI GATC 3 cut(s) 633, 640, 719
BstMAI GTCTC 3 cut(s) 2, 20, 829
BstMBI GATC 3 cut(s) 630, 637, 716
BstMWI GCNNNNNNNGC 2 cut(s) 355, 371
BstNSI RCATGY 1 cut(s) 845
BstPAI GACNNNNGTC 1 cut(s) 789
BstSCI CCNGG 2 cut(s) 374, 712
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 716
BstYI RGATCY 1 cut(s) 716
BsuRI GGCC 2 cut(s) 374, 675
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 152, 556
Cac8I GCNNGC 2 cut(s) 76, 760
CciI TCATGA 1 cut(s) 526
Cfr10I RCCGGY 2 cut(s) 434, 758
CseI GACGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 306
CviAII CATG 4 cut(s) 512, 527, 782, 842
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 2 cut(s) 6, 851
DpnI GATC 3 cut(s) 632, 639, 718
DpnII GATC 3 cut(s) 630, 637, 716
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 110
EcoNI CCTNNNNNAGG 2 cut(s) 669, 680
EcoT38I GRGCYC 1 cut(s) 449
FaeI CATG 4 cut(s) 515, 530, 785, 845
FaqI GGGAC 2 cut(s) 28, 763
FatI CATG 4 cut(s) 511, 526, 781, 841
FauI CCCGC 1 cut(s) 593
FauNDI CATATG 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 118, 356
FokI GGATG 2 cut(s) 159, 563
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 118, 356
GluI GCNGC 2 cut(s) 118, 356
GsaI CCCAGC 2 cut(s) 453, 599
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 2 cut(s) 374, 675
HapII CCGG 6 cut(s) 375, 435, 462, 714, 759, 794
HgaI GACGC 1 cut(s) 277
Hin1II CATG 4 cut(s) 515, 530, 785, 845
HinfI GANTC 2 cut(s) 28, 728
HpaII CCGG 6 cut(s) 375, 435, 462, 714, 759, 794
HphI GGTGA 2 cut(s) 208, 476
Hpy188I TCNGA 5 cut(s) 129, 190, 322, 337, 490
Hpy188III TCNNGA 5 cut(s) 389, 496, 527, 541, 720
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 8 cut(s) 87, 154, 187, 526, 676, 751, 854, 871
HpyCH4V TGCA 2 cut(s) 349, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 355, 371
HpyF3I CTNAG 2 cut(s) 6, 851
Hsp92II CATG 4 cut(s) 515, 530, 785, 845
KroI GCCGGC 1 cut(s) 758
KroNI GCCGGC 1 cut(s) 760
Kzo9I GATC 3 cut(s) 630, 637, 716
LmnI GCTCC 3 cut(s) 285, 422, 592
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 4 cut(s) 106, 137, 541, 873
MaeIII GTNAC 2 cut(s) 246, 464
MalI GATC 3 cut(s) 632, 639, 718
MboI GATC 3 cut(s) 630, 637, 716
MfeI CAATTG 2 cut(s) 350, 753
MflI RGATCY 1 cut(s) 716
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 6 cut(s) 62, 314, 344, 350, 572, 753
MlyI GAGTC 2 cut(s) 22, 722
MmeI TCCRAC 2 cut(s) 345, 733
MroNI GCCGGC 1 cut(s) 758
MroXI GAANNNNTTC 2 cut(s) 384, 608
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 3 cut(s) 138, 531, 767
MspI CCGG 6 cut(s) 375, 435, 462, 714, 759, 794
MspR9I CCNGG 2 cut(s) 376, 714
MunI CAATTG 2 cut(s) 350, 753
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 355, 371
NaeI GCCGGC 1 cut(s) 760
NciI CCSGG 2 cut(s) 376, 714
NdeI CATATG 1 cut(s) 257
NdeII GATC 3 cut(s) 630, 637, 716
NgoMIV GCCGGC 1 cut(s) 758
NlaIII CATG 4 cut(s) 515, 530, 785, 845
NlaIV GGNNCC 3 cut(s) 418, 460, 763
NmuCI GTSAC 2 cut(s) 246, 464
NspI RCATGY 1 cut(s) 845
OliI CACNNNNGTG 1 cut(s) 138
PagI TCATGA 1 cut(s) 526
PceI AGGCCT 1 cut(s) 675
PciI ACATGT 1 cut(s) 841
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PdiI GCCGGC 1 cut(s) 760
PdmI GAANNNNTTC 2 cut(s) 384, 608
PkrI GCNGC 2 cut(s) 119, 357
PleI GAGTC 2 cut(s) 22, 722
PpsI GAGTC 2 cut(s) 22, 722
PscI ACATGT 1 cut(s) 841
PshAI GACNNNNGTC 1 cut(s) 789
PsiI TTATAA 1 cut(s) 369
PspFI CCCAGC 2 cut(s) 449, 595
PspN4I GGNNCC 3 cut(s) 418, 460, 763
PsuI RGATCY 1 cut(s) 716
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 3 cut(s) 138, 531, 767
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 2 cut(s) 118, 356
Sau3AI GATC 3 cut(s) 630, 637, 716
SchI GAGTC 2 cut(s) 22, 722
ScrFI CCNGG 2 cut(s) 376, 714
SduI GDGCHC 1 cut(s) 449
SfaNI GCATC 4 cut(s) 106, 137, 541, 873
SgrAI CRCCGGYG 1 cut(s) 434
SmiMI CAYNNNNRTG 3 cut(s) 138, 531, 767
Sse9I AATT 6 cut(s) 62, 314, 344, 350, 572, 753
SseBI AGGCCT 1 cut(s) 675
SsiI CCGC 3 cut(s) 355, 476, 600
StuI AGGCCT 1 cut(s) 675
StyD4I CCNGG 2 cut(s) 374, 712
TaqI TCGA 3 cut(s) 519, 651, 721
TasI AATT 6 cut(s) 62, 314, 344, 350, 572, 753
TauI GCSGC 1 cut(s) 358
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseFI GTSAC 2 cut(s) 246, 464
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 2 cut(s) 246, 464
TspDTI ATGAA 4 cut(s) 170, 354, 500, 515
XagI CCTNNNNNAGG 2 cut(s) 669, 680
XapI RAATTY 1 cut(s) 572
XceI RCATGY 1 cut(s) 845
XcmI CCANNNNNNNNNTGG 1 cut(s) 828
XmnI GAANNNNTTC 2 cut(s) 384, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.