Rw1G008030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000213
Physical Location & Seq
Forward (+)
17182945 .. 17184216
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008030.1

Sequence Viewer

Length: 696 bp
ATGACCCAAAAATCGTTAGAAAGCTATGGTGAAGAAGAAGAAGGGCGGCATCTGCACAAGCATCGAAAGATCAGGGACAGTGAAGAAGATATGGATTTTCGGGTGAAGATTCAGAGGACAGGCATAAGCATGACCAAAATATCGATTGAGAAGACTAGTGAAGAAGAAGAAGGTAGTAAGTCCAAGTCCAAGTCCCTTTACATCTGTAGCTTTGAACGTAACCAGTCGATTGATAAGAGTAAAGCTCTCGTGCTCGACACCAAGCACCATAACAAGAAGATAATGTTTACAGCAGAGAACTATGATGACTATGGTTACCGGAGTAGGGTACTGGTTTATCTTCTGTCCCTCAATGAAAGCCAAGAAACAATCACTCCAATCCATGAATTGAAGCTGCCGGAGCTGCCCCCTGGTAAACCAAGCCAGTATCACTTTCTCCATCTAGGAGATCACAAGGTCTGCCTTGTCATTCCCAAGTTTAACATCCCATATGATGATCTACCTGAAGACTATTATGTCACCCTTGGGACTCATTTGCTGCAGGTTGCTCTCATACCTTTTAAATTTGAATTTGACATCTCCAAGGGTATCACAAATTGTTTCACTGTCCAATTCCAGACTCATCACATCTTGGAATATCGTAGCAACCCATCCACTCTTCCTTTCACTCGCACACTCGGTTGCTTTGTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

26.93

Weight (kDa)

6.46

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 515
Acc36I ACCTGC 1 cut(s) 532
AciI CCGC 1 cut(s) 46
AcsI RAATTY 2 cut(s) 563, 569
AcuI CTGAAG 1 cut(s) 525
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 3 cut(s) 215, 391, 569
AhlI ACTAGT 1 cut(s) 155
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 5 cut(s) 24, 210, 245, 394, 403
AluI AGCT 5 cut(s) 24, 210, 245, 394, 403
Alw21I GWGCWC 1 cut(s) 255
ApeKI GCWGC 3 cut(s) 394, 403, 538
ApoI RAATTY 2 cut(s) 563, 569
AsuHPI GGTGA 3 cut(s) 41, 115, 511
BauI CACGAG 1 cut(s) 248
BbsI GAAGAC 2 cut(s) 158, 513
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 3 cut(s) 381, 390, 525
BccI CCATC 2 cut(s) 447, 658
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 1 cut(s) 411
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 2 cut(s) 156, 443
BfmI CTRYAG 2 cut(s) 205, 539
BfuAI ACCTGC 1 cut(s) 532
BisI GCNGC 4 cut(s) 47, 395, 404, 539
BlsI GCNGC 4 cut(s) 48, 396, 405, 540
Bme1390I CCNGG 1 cut(s) 411
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 2 cut(s) 58, 70
BpiI GAAGAC 2 cut(s) 158, 513
BplI GAGNNNNNCTC 2 cut(s) 229, 261
Bsa29I ATCGAT 1 cut(s) 143
BsaJI CCNNGG 3 cut(s) 409, 523, 582
BsaWI WCCGGW 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 3 cut(s) 223, 336, 424
BseBI CCWGG 1 cut(s) 411
BseCI ATCGAT 1 cut(s) 143
BseDI CCNNGG 3 cut(s) 409, 523, 582
BseGI GGATG 2 cut(s) 483, 650
BseLI CCNNNNNNNGG 1 cut(s) 325
BseNI ACTGG 3 cut(s) 223, 336, 424
BseXI GCAGC 3 cut(s) 381, 390, 525
BsgI GTGCAG 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 2 cut(s) 319, 398
BslFI GGGAC 4 cut(s) 89, 178, 331, 541
BslI CCNNNNNNNGG 1 cut(s) 325
BsmFI GGGAC 4 cut(s) 89, 178, 331, 541
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 3 cut(s) 69, 448, 496
BspACI CCGC 1 cut(s) 46
BspDI ATCGAT 1 cut(s) 143
BspMAI CTGCAG 1 cut(s) 543
BspMI ACCTGC 1 cut(s) 532
BsrI ACTGG 3 cut(s) 223, 336, 424
BssECI CCNNGG 3 cut(s) 409, 523, 582
BssMI GATC 3 cut(s) 69, 448, 496
BssSI CACGAG 1 cut(s) 248
BssT1I CCWWGG 2 cut(s) 523, 582
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 2 cut(s) 80, 607
Bst6I CTCTTC 1 cut(s) 663
BstEII GGTNACC 1 cut(s) 314
BstF5I GGATG 2 cut(s) 483, 650
BstKTI GATC 3 cut(s) 72, 451, 499
BstMBI GATC 3 cut(s) 69, 448, 496
BstMWI GCNNNNNNNGC 3 cut(s) 52, 400, 403
BstNI CCWGG 1 cut(s) 411
BstPI GGTNACC 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 2 cut(s) 205, 539
BstV1I GCAGC 3 cut(s) 381, 390, 525
BstV2I GAAGAC 2 cut(s) 158, 513
Bsu15I ATCGAT 1 cut(s) 143
BsuTUI ATCGAT 1 cut(s) 143
BtsCI GGATG 2 cut(s) 483, 650
BtsIMutI CAGTG 2 cut(s) 85, 603
BveI ACCTGC 1 cut(s) 532
ClaI ATCGAT 1 cut(s) 143
Csp6I GTAC 1 cut(s) 329
CviAII CATG 2 cut(s) 130, 383
CviJI RGCY 7 cut(s) 24, 210, 245, 360, 394, 403, 423
CviKI_1 RGCY 7 cut(s) 24, 210, 245, 360, 394, 403, 423
CviQI GTAC 1 cut(s) 329
DpnI GATC 3 cut(s) 71, 450, 498
DpnII GATC 3 cut(s) 69, 448, 496
DraI TTTAAA 1 cut(s) 562
DrdI GACNNNNNNGTC 1 cut(s) 515
DseDI GACNNNNNNGTC 1 cut(s) 515
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Eco130I CCWWGG 2 cut(s) 523, 582
Eco57I CTGAAG 1 cut(s) 525
Eco91I GGTNACC 1 cut(s) 314
EcoO65I GGTNACC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 2 cut(s) 523, 582
ErhI CCWWGG 2 cut(s) 523, 582
FaeI CATG 2 cut(s) 133, 386
FaqI GGGAC 4 cut(s) 89, 178, 331, 541
FatI CATG 2 cut(s) 129, 382
FauNDI CATATG 1 cut(s) 490
Fnu4HI GCNGC 4 cut(s) 47, 395, 404, 539
FokI GGATG 2 cut(s) 470, 637
Fsp4HI GCNGC 4 cut(s) 47, 395, 404, 539
FspBI CTAG 2 cut(s) 156, 443
GluI GCNGC 4 cut(s) 47, 395, 404, 539
HapII CCGG 2 cut(s) 319, 398
Hin1II CATG 2 cut(s) 133, 386
HinfI GANTC 3 cut(s) 109, 529, 619
HpaII CCGG 2 cut(s) 319, 398
HphI GGTGA 3 cut(s) 41, 115, 511
Hpy166II GTNNAC 2 cut(s) 288, 416
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 616
Hpy8I GTNNAC 2 cut(s) 288, 416
HpyAV CCTTC 2 cut(s) 35, 164
HpyCH4III ACNGT 2 cut(s) 80, 607
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 55, 541
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 400, 403
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 2 cut(s) 133, 386
Kzo9I GATC 3 cut(s) 69, 448, 496
LmnI GCTCC 1 cut(s) 400
Lsp1109I GCAGC 3 cut(s) 381, 390, 525
LweI GCATC 2 cut(s) 58, 70
MaeI CTAG 2 cut(s) 156, 443
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 3 cut(s) 218, 314, 517
MalI GATC 3 cut(s) 71, 450, 498
MboI GATC 3 cut(s) 69, 448, 496
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 5 cut(s) 386, 563, 569, 595, 611
MlyI GAGTC 2 cut(s) 523, 613
MnlI CCTC 2 cut(s) 108, 359
MseI TTAA 3 cut(s) 480, 561, 694
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 2 cut(s) 319, 398
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 3 cut(s) 52, 400, 403
NdeI CATATG 1 cut(s) 490
NdeII GATC 3 cut(s) 69, 448, 496
NlaIII CATG 2 cut(s) 133, 386
NmuCI GTSAC 1 cut(s) 517
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 4 cut(s) 48, 396, 405, 540
PleI GAGTC 2 cut(s) 523, 613
PpsI GAGTC 2 cut(s) 523, 613
Psp6I CCWGG 1 cut(s) 409
PspEI GGTNACC 1 cut(s) 314
PspGI CCWGG 1 cut(s) 409
PstI CTGCAG 1 cut(s) 543
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 3 cut(s) 480, 561, 694
SatI GCNGC 4 cut(s) 47, 395, 404, 539
Sau3AI GATC 3 cut(s) 69, 448, 496
SchI GAGTC 2 cut(s) 523, 613
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 2 cut(s) 58, 70
SfcI CTRYAG 2 cut(s) 205, 539
SmiMI CAYNNNNRTG 1 cut(s) 128
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 5 cut(s) 386, 563, 569, 595, 611
SsiI CCGC 1 cut(s) 46
SspMI CTAG 2 cut(s) 156, 443
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 2 cut(s) 523, 582
TaaI ACNGT 2 cut(s) 80, 607
TaiI ACGT 1 cut(s) 220
TaqI TCGA 4 cut(s) 64, 143, 227, 255
TasI AATT 5 cut(s) 386, 563, 569, 595, 611
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 3 cut(s) 480, 561, 694
Tru9I TTAA 3 cut(s) 480, 561, 694
TscAI CASTG 2 cut(s) 85, 610
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 3 cut(s) 394, 403, 538
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 2 cut(s) 369, 399
TspRI CASTG 2 cut(s) 85, 610
XapI RAATTY 2 cut(s) 563, 569
XspI CTAG 2 cut(s) 156, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.