FvH4_6g38540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000213
Physical Location & Seq
Reverse (-)
30491361 .. 30492592
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38540.t1

Sequence Viewer

Length: 1026 bp
ATGGAGGAGAATCAGATGATTCATGGCGGTGTAGGATTGAAAGAAGAATTTCTTGATAAGTCTCTGTACCTCGGTAGCGTTGAATCTATAACCTTCGGAGACACGCTAAAGCTTGCCTATGTTATTCGGTCCATCAATCTTCGCGAATTGCTGATGCCACCATCGTCGATGGTGGAAAAAATAGCACGGCAAGTGGCGTGTATGACCGGGGAAGATCTCCCAATCTGTGGGGGTTGCGGTACTTTAAAGGGAGGGAAAGAAAGACTGCTGATGGTTGAGTTTGCTGGCAAACTCTACGTTCTGAGCTGTACGCCTAGACGTTATAATTTCGAGGTATTTGACCCCGATCGGGCTACTTGGTTGGCTCTGCCGCCATACCCTAAACCTTTTCGTGGCAGCCCCTCCTCTTATGCACTTGCAGGCAGCAAGTTGTTTGTGTCCAACCTAGACAACTGTTCATGGTCCAGAAATAAGGAACGGCCGCCTCAAAATGTTTGGTGCTTTGACCTTGCAGCCCAAGACCCTCAGAAACAAAAATGGAAGAGAGTCCTCACTCCATTTCCATTATTTCGCAATGGTCTAGTGCTGGACCTCGAACAAAACCCTCACAGAAAGTTACTGTTTACTCTCAAGCGGGTGCCCCCCTCCGTGACTAATCTACTAGTTTATCTTATGTCCTTGGATGAAGACCAAGAAGATATCACTGAAATTTTGGAGATGAATCTGCCAGCTGAGTTCCCTTACCCAGACGAGTATCATTTCTTCCATCTAGGGGGAAACAATGTCTGCCTTGTCAACTCCTCTCCCAGAGACATAGATGATGACTACTTTGAAACATCTGAAGATGGGTCTCTTATCTTGCGTAGTGCTGCCATACTTTTTCAGTTTGAATTTGACATCTGCAAGGTGAACGAGGACATGAACAATTGTATCACTGTTGAATTCCAGCCTCCTTGCGGTTTCGAATACCATGGCGACCCAGGCCCTCACTCACCGCCTAGCATACTTGGTTGCTTTGTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

38.64

Weight (kDa)

4.94

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 637
AccB7I CCANNNNNTGG 1 cut(s) 227
AccII CGCG 1 cut(s) 144
AciI CCGC 7 cut(s) 27, 237, 371, 482, 634, 957, 995
AcoI YGGCCR 1 cut(s) 479
AcsI RAATTY 4 cut(s) 47, 708, 890, 941
AcuI CTGAAG 1 cut(s) 861
AfaI GTAC 3 cut(s) 68, 241, 310
AfiI CCNNNNNNNGG 5 cut(s) 227, 349, 392, 772, 956
AgsI TTSAA 5 cut(s) 40, 83, 833, 890, 941
AhlI ACTAGT 1 cut(s) 661
AjnI CCWGG 1 cut(s) 979
AluBI AGCT 3 cut(s) 112, 306, 731
AluI AGCT 3 cut(s) 112, 306, 731
Alw21I GWGCWC 1 cut(s) 1023
Alw26I GTCTC 4 cut(s) 66, 93, 804, 855
AoxI GGCC 2 cut(s) 479, 982
ApeKI GCWGC 4 cut(s) 396, 423, 512, 869
ApoI RAATTY 4 cut(s) 47, 708, 890, 941
Asp700I GAANNNNTTC 1 cut(s) 48
AspS9I GGNCC 4 cut(s) 129, 462, 589, 983
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 2 cut(s) 919, 984
AsuII TTCGAA 1 cut(s) 963
AvaII GGWCC 3 cut(s) 129, 462, 589
BaeGI GKGCMC 1 cut(s) 642
BaeI ACNNNNGTAYC 2 cut(s) 913, 946
BanI GGYRCC 1 cut(s) 637
BarI GAAGNNNNNNTAC 2 cut(s) 746, 778
BbsI GAAGAC 1 cut(s) 693
Bbv12I GWGCWC 1 cut(s) 1023
BbvI GCAGC 4 cut(s) 408, 435, 524, 856
BccI CCATC 6 cut(s) 140, 163, 169, 265, 774, 839
BceAI ACGGC 2 cut(s) 203, 494
BciT130I CCWGG 1 cut(s) 981
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 4 cut(s) 66, 93, 804, 855
BcuI ACTAGT 1 cut(s) 661
BfaI CTAG 6 cut(s) 315, 446, 581, 662, 770, 999
BglII AGATCT 1 cut(s) 214
BisI GCNGC 6 cut(s) 371, 397, 424, 482, 513, 870
BlsI GCNGC 6 cut(s) 372, 398, 425, 483, 514, 871
Bme1390I CCNGG 2 cut(s) 208, 981
Bme18I GGWCC 3 cut(s) 129, 462, 589
BmgT120I GGNCC 4 cut(s) 129, 462, 589, 983
BmiI GGNNCC 1 cut(s) 639
BmrFI CCNGG 2 cut(s) 208, 981
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 693
Bpu14I TTCGAA 1 cut(s) 963
BpuEI CTTGAG 1 cut(s) 614
BpuMI CCSGG 1 cut(s) 208
BsaI GGTCTC 1 cut(s) 855
BsaJI CCNNGG 5 cut(s) 70, 207, 678, 970, 979
Bsc4I CCNNNNNNNGG 5 cut(s) 227, 349, 392, 772, 956
Bse3DI GCAATG 1 cut(s) 580
BseBI CCWGG 1 cut(s) 981
BseDI CCNNGG 5 cut(s) 70, 207, 678, 970, 979
BseGI GGATG 1 cut(s) 688
BseLI CCNNNNNNNGG 5 cut(s) 227, 349, 392, 772, 956
BseMI GCAATG 1 cut(s) 580
BseMII CTCAG 3 cut(s) 293, 539, 723
BseRI GAGGAG 3 cut(s) 20, 394, 790
BseSI GKGCMC 1 cut(s) 642
BseX3I CGGCCG 1 cut(s) 479
BseXI GCAGC 4 cut(s) 408, 435, 524, 856
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 2 cut(s) 349, 482
BshFI GGCC 2 cut(s) 481, 984
BshNI GGYRCC 1 cut(s) 637
BsiEI CGRYCG 2 cut(s) 349, 482
BsiHKAI GWGCWC 1 cut(s) 1023
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 5 cut(s) 227, 349, 392, 772, 956
BsmAI GTCTC 4 cut(s) 66, 93, 804, 855
BsnI GGCC 2 cut(s) 481, 984
Bso31I GGTCTC 1 cut(s) 855
Bsp119I TTCGAA 1 cut(s) 963
Bsp1286I GDGCHC 2 cut(s) 642, 1023
Bsp143I GATC 2 cut(s) 214, 346
Bsp19I CCATGG 1 cut(s) 970
Bsp68I TCGCGA 1 cut(s) 144
BspACI CCGC 7 cut(s) 27, 237, 371, 482, 634, 957, 995
BspANI GGCC 2 cut(s) 481, 984
BspCNI CTCAG 3 cut(s) 294, 538, 724
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 639
BspT104I TTCGAA 1 cut(s) 963
BspT107I GGYRCC 1 cut(s) 637
BspTNI GGTCTC 1 cut(s) 855
BsrDI GCAATG 1 cut(s) 580
BssECI CCNNGG 5 cut(s) 70, 207, 678, 970, 979
BssMI GATC 2 cut(s) 214, 346
BssT1I CCWWGG 2 cut(s) 678, 970
Bst2UI CCWGG 1 cut(s) 981
Bst4CI ACNGT 3 cut(s) 455, 621, 937
Bst6I CTCTTC 1 cut(s) 536
BstBI TTCGAA 1 cut(s) 963
BstC8I GCNNGC 4 cut(s) 114, 286, 421, 729
BstDEI CTNAG 3 cut(s) 302, 525, 732
BstDSI CCRYGG 1 cut(s) 970
BstF5I GGATG 1 cut(s) 688
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 2 cut(s) 217, 349
BstMAI GTCTC 4 cut(s) 66, 93, 804, 855
BstMBI GATC 2 cut(s) 214, 346
BstMCI CGRYCG 2 cut(s) 349, 482
BstMWI GCNNNNNNNGC 1 cut(s) 981
BstNI CCWGG 1 cut(s) 981
BstSCI CCNGG 2 cut(s) 206, 979
BstSLI GKGCMC 1 cut(s) 642
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 408, 435, 524, 856
BstV2I GAAGAC 1 cut(s) 693
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BstZI CGGCCG 1 cut(s) 479
BsuRI GGCC 2 cut(s) 481, 984
BtgI CCRYGG 1 cut(s) 970
BtsCI GGATG 1 cut(s) 688
BtsIMutI CAGTG 2 cut(s) 702, 933
BtuMI TCGCGA 1 cut(s) 144
Cac8I GCNNGC 4 cut(s) 114, 286, 421, 729
Cfr13I GGNCC 4 cut(s) 129, 462, 589, 983
Csp6I GTAC 3 cut(s) 67, 240, 309
CviAII CATG 4 cut(s) 23, 459, 919, 971
CviQI GTAC 3 cut(s) 67, 240, 309
DdeI CTNAG 3 cut(s) 302, 525, 732
DpnI GATC 2 cut(s) 216, 348
DpnII GATC 2 cut(s) 214, 346
DraI TTTAAA 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 479
EagI CGGCCG 1 cut(s) 479
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
EclXI CGGCCG 1 cut(s) 479
Eco130I CCWWGG 2 cut(s) 678, 970
Eco31I GGTCTC 1 cut(s) 855
Eco32I GATATC 1 cut(s) 700
Eco47I GGWCC 3 cut(s) 129, 462, 589
Eco52I CGGCCG 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 861
EcoO109I RGGNCCY 1 cut(s) 983
EcoRI GAATTC 1 cut(s) 941
EcoRII CCWGG 1 cut(s) 979
EcoRV GATATC 1 cut(s) 700
EcoT14I CCWWGG 2 cut(s) 678, 970
ErhI CCWWGG 2 cut(s) 678, 970
FaeI CATG 4 cut(s) 26, 462, 922, 974
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 4 cut(s) 22, 458, 918, 970
FauI CCCGC 1 cut(s) 627
Fnu4HI GCNGC 6 cut(s) 371, 397, 424, 482, 513, 870
FokI GGATG 1 cut(s) 695
Fsp4HI GCNGC 6 cut(s) 371, 397, 424, 482, 513, 870
FspBI CTAG 6 cut(s) 315, 446, 581, 662, 770, 999
GluI GCNGC 6 cut(s) 371, 397, 424, 482, 513, 870
HaeIII GGCC 2 cut(s) 481, 984
HapII CCGG 1 cut(s) 207
Hin1II CATG 4 cut(s) 26, 462, 922, 974
HincII GTYRAC 1 cut(s) 796
HindII GTYRAC 1 cut(s) 796
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 5 cut(s) 10, 19, 83, 546, 721
HpaII CCGG 1 cut(s) 207
HphI GGTGA 2 cut(s) 919, 984
Hpy166II GTNNAC 3 cut(s) 624, 796, 910
Hpy188I TCNGA 5 cut(s) 15, 98, 303, 528, 841
Hpy188III TCNNGA 3 cut(s) 53, 143, 465
Hpy8I GTNNAC 3 cut(s) 624, 796, 910
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 3 cut(s) 455, 621, 937
HpyCH4IV ACGT 2 cut(s) 297, 319
HpyCH4V TGCA 4 cut(s) 413, 419, 512, 903
HpyF10VI GCNNNNNNNGC 1 cut(s) 981
HpyF3I CTNAG 3 cut(s) 302, 525, 732
HpySE526I ACGT 2 cut(s) 297, 319
Hsp92II CATG 4 cut(s) 26, 462, 922, 974
Kzo9I GATC 2 cut(s) 214, 346
Lsp1109I GCAGC 4 cut(s) 408, 435, 524, 856
LweI GCATC 1 cut(s) 144
MaeI CTAG 6 cut(s) 315, 446, 581, 662, 770, 999
MaeII ACGT 2 cut(s) 297, 319
MaeIII GTNAC 2 cut(s) 615, 649
MalI GATC 2 cut(s) 216, 348
MboI GATC 2 cut(s) 214, 346
MboII GAAGA 8 cut(s) 56, 131, 224, 553, 698, 707, 754, 854
MfeI CAATTG 1 cut(s) 925
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 2 cut(s) 642, 1023
MluCI AATT 7 cut(s) 47, 146, 325, 708, 890, 925, 941
MlyI GAGTC 1 cut(s) 555
MmeI TCCRAC 1 cut(s) 465
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 2 cut(s) 208, 981
MunI CAATTG 1 cut(s) 925
MvaI CCWGG 1 cut(s) 981
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 981
NciI CCSGG 1 cut(s) 208
NcoI CCATGG 1 cut(s) 970
NdeII GATC 2 cut(s) 214, 346
NlaIII CATG 4 cut(s) 26, 462, 922, 974
NlaIV GGNNCC 1 cut(s) 639
NmuCI GTSAC 1 cut(s) 649
NruI TCGCGA 1 cut(s) 144
NspV TTCGAA 1 cut(s) 963
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 4 cut(s) 10, 19, 83, 721
PflMI CCANNNNNTGG 1 cut(s) 227
PkrI GCNGC 6 cut(s) 372, 398, 425, 483, 514, 871
Ple19I CGATCG 1 cut(s) 349
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PsiI TTATAA 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 979
PspGI CCWGG 1 cut(s) 979
PspN4I GGNNCC 1 cut(s) 639
PspPI GGNCC 4 cut(s) 129, 462, 589, 983
PsuI RGATCY 1 cut(s) 214
PvuI CGATCG 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 731
RruI TCGCGA 1 cut(s) 144
RsaI GTAC 3 cut(s) 68, 241, 310
RsaNI GTAC 3 cut(s) 67, 240, 309
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 6 cut(s) 371, 397, 424, 482, 513, 870
Sau3AI GATC 2 cut(s) 214, 346
Sau96I GGNCC 4 cut(s) 129, 462, 589, 983
SchI GAGTC 1 cut(s) 555
ScrFI CCNGG 2 cut(s) 208, 981
SduI GDGCHC 2 cut(s) 642, 1023
SfaNI GCATC 1 cut(s) 144
SfuI TTCGAA 1 cut(s) 963
SinI GGWCC 3 cut(s) 129, 462, 589
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
SpeI ACTAGT 1 cut(s) 661
Sse9I AATT 7 cut(s) 47, 146, 325, 708, 890, 925, 941
SsiI CCGC 7 cut(s) 27, 237, 371, 482, 634, 957, 995
SspMI CTAG 6 cut(s) 315, 446, 581, 662, 770, 999
StyD4I CCNGG 2 cut(s) 206, 979
StyI CCWWGG 2 cut(s) 678, 970
TaaI ACNGT 3 cut(s) 455, 621, 937
TaiI ACGT 2 cut(s) 300, 322
TaqI TCGA 4 cut(s) 167, 330, 594, 963
TaqII GACCGA 1 cut(s) 117
TasI AATT 7 cut(s) 47, 146, 325, 708, 890, 925, 941
TauI GCSGC 2 cut(s) 373, 484
TfiI GAWTC 4 cut(s) 10, 19, 83, 721
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 2 cut(s) 709, 940
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 4 cut(s) 396, 423, 512, 869
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 5 cut(s) 11, 447, 699, 734, 935
TspGWI ACGGA 1 cut(s) 637
TspRI CASTG 2 cut(s) 709, 940
Van91I CCANNNNNTGG 1 cut(s) 227
VpaK11BI GGWCC 3 cut(s) 129, 462, 589
XapI RAATTY 4 cut(s) 47, 708, 890, 941
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 6 cut(s) 315, 446, 581, 662, 770, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.