RLG00000029767

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000213
Physical Location & Seq
Forward (+)
48798449 .. 48800837
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029767

Sequence Viewer

Length: 1509 bp
ATGTCCCCCAAAAAATGTCTTAAGTTAGCCGAAGCCAGCGATGCCGAAGAAAGAAGGCATCGTCTGGTTCGGCATTGCTGCCCTCTTCAGAAGCATAAGAAGCACAGGTGTGATGGATGCGTGATGAAGAAGGAGAAGAAGAAGAAAATAAGAGTATCAGAGAAGGAGAAGAAGACAACGAAGAAGTTGAAGCTGGAGGAGGAGGAGGCTAAGAAGTCACTCTACCTATGTTTCGTTGAACAACGCGAGGGTGGGAGCGTCGCTATTGTTGTTCGTACCATCAAATTATCCGACTTGTTATCCTCCGATGAAGAATTGCAATTGCGGCAAGTGGCTTATAAGGCCGGGGAAGATGTTCCCGATTTTGTTGGTTGTGCTGTTTTTGGCTCCCAAATCATTTTCGCCGGTGGCGTGTGCCCCAGCTTGGGTTCCGGTGACAGATTTCCGCCAATAAGTTCTGAACTCTGGAATAGAGATGTTCATGCCTTCGAGGTTCATGACAATGTTTTCAGGAAGATGGATGCGACTTTACAGAGAGGGAAATTTTCCCCTATGATGGTGGAGCTGGGCGGGAAAGTGTACGCTCTTTCCTATGAGCTGATCGCTGATCCTCCATCATTCGAGGTATTTGACCCTAAAATAGGCCTGTGGAAGGGTTTGCCCCAACCTCCATTTTTCCAACCCAGATCTCCATATGGCTCTCATACTTCCTTCTTTTATGCAATTGCGGGCACCAAGATGTTTGTGTCCCATGACAAATGTCCGGTGTTCTGCTTTGACGTGGCACACCCAGACAGAAAATGGAGACTAGTCCCTACTATGTGTGGCGGCGGCCCTTTTCCTTTTATGGGCAACGCTTTTGTCCTGGACCTGCCGGGGCACCATGATGACAAGAAGAAGATCATGTTTGCTTATATTCATGATACGTGGCGGCTGGGAGTTTATCTTTTTTCCTTGGAGGAAGGTCAGGAATCCATTGCACCGATCGGTTATTTGAAGCTGCCATGGTGGCCTTATGAATTGGGTTCGGCAGCAGGCTGTGATTTTGTCCACATAGGAGGTCAGAAAGCCTGCATTCTTATCACCGAATTCAACCTTCCTTATGGTGAAGGACCTGACTATAAGCCCGGGACTTATAAGAAGCGGGGGGTTGCGATACCATTTCAATTTCAAGTTGATATCACTAAGGTGGACAGGGACGAGAAGAATTGTTTCACTCTCCAATTCATGACTCCTCGCACCTTCGAATTCCAGACCAACCCATCCACTTTTCCTCTACCTTTTACGGTGGGAGATTCTGATATCAAGTTCACAGTGGAACCGCTCGAGTTGGCTTGGTTTACAGTGGGGTTGGCCAGGTTCCCTGGTGCCTTCTGGTGTAGTTCTCTTCTTACATCATGGTATACGTATGGAACTTTGTATACTGAGAAGTGGTGCATGGAAAATAAATTTGTTCACTCTCAAGCAGGTAAGATGGGTATTGATAGGGTTCAAGAGTTGAAGCTGTAA

Protein Analysis

503

Amino Acids

57.09

Weight (kDa)

8.53

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 177 - 287 7.4e-09 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 339, 1137
Acc36I ACCTGC 2 cut(s) 879, 1457
AccB1I GGYRCC 3 cut(s) 731, 879, 1367
AccBSI CCGCTC 1 cut(s) 1324
AccI GTMKAC 2 cut(s) 1403, 1421
AccII CGCG 1 cut(s) 246
AciI CCGC 9 cut(s) 325, 446, 570, 728, 828, 831, 931, 1144, 1322
AclWI GGATC 1 cut(s) 602
AcoI YGGCCR 1 cut(s) 1353
AcsI RAATTY 4 cut(s) 542, 1088, 1247, 1448
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 2 cut(s) 277, 581
AfiI CCNNNNNNNGG 6 cut(s) 424, 425, 556, 641, 652, 848
AflII CTTAAG 1 cut(s) 20
AgsI TTSAA 8 cut(s) 190, 239, 997, 1093, 1166, 1172, 1493, 1501
AhlI ACTAGT 1 cut(s) 808
AjiI CACGTC 1 cut(s) 781
AjnI CCWGG 3 cut(s) 864, 1355, 1363
AleI CACNNNNGTG 2 cut(s) 108, 1187
AluBI AGCT 6 cut(s) 193, 423, 565, 598, 1000, 1504
AluI AGCT 6 cut(s) 193, 423, 565, 598, 1000, 1504
Alw26I GTCTC 1 cut(s) 799
AlwI GGATC 1 cut(s) 602
Ama87I CYCGRG 2 cut(s) 1127, 1325
AoxI GGCC 5 cut(s) 342, 643, 832, 1010, 1353
ApeKI GCWGC 3 cut(s) 78, 1000, 1031
ApoI RAATTY 4 cut(s) 542, 1088, 1247, 1448
Asp700I GAANNNNTTC 2 cut(s) 354, 1211
AspS9I GGNCC 3 cut(s) 833, 868, 1112
AsuC2I CCSGG 4 cut(s) 346, 876, 1128, 1129
AsuHPI GGTGA 3 cut(s) 446, 1075, 1118
AsuII TTCGAA 1 cut(s) 1245
AvaI CYCGRG 2 cut(s) 1127, 1325
AvaII GGWCC 2 cut(s) 868, 1112
BaeGI GKGCMC 3 cut(s) 419, 734, 882
BalI TGGCCA 1 cut(s) 1355
BanI GGYRCC 3 cut(s) 731, 879, 1367
BarI GAAGNNNNNNTAC 2 cut(s) 206, 238
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 3 cut(s) 65, 987, 1043
BccI CCATC 7 cut(s) 107, 287, 511, 550, 622, 1270, 1468
BciT130I CCWGG 3 cut(s) 866, 1357, 1365
BcnI CCSGG 4 cut(s) 346, 876, 1128, 1129
BcoDI GTCTC 1 cut(s) 799
BcuI ACTAGT 1 cut(s) 808
BfaI CTAG 1 cut(s) 809
BfrI CTTAAG 1 cut(s) 20
BfuAI ACCTGC 2 cut(s) 879, 1457
BglI GCCNNNNNGGC 1 cut(s) 1009
BglII AGATCT 1 cut(s) 686
BisI GCNGC 7 cut(s) 79, 326, 829, 832, 932, 1001, 1032
BlsI GCNGC 7 cut(s) 80, 327, 830, 833, 933, 1002, 1033
Bme1390I CCNGG 7 cut(s) 346, 866, 876, 1128, 1129, 1357, 1365
Bme18I GGWCC 2 cut(s) 868, 1112
BmeT110I CYCGRG 2 cut(s) 1127, 1325
BmgBI CACGTC 1 cut(s) 781
BmgT120I GGNCC 3 cut(s) 833, 868, 1112
BmiI GGNNCC 7 cut(s) 388, 430, 733, 881, 1320, 1361, 1369
BmrFI CCNGG 7 cut(s) 346, 866, 876, 1128, 1129, 1357, 1365
BmsI GCATC 4 cut(s) 31, 67, 107, 511
BoxI GACNNNNGTC 1 cut(s) 759
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 215
Bpu14I TTCGAA 1 cut(s) 1245
BpuEI CTTGAG 1 cut(s) 1446
BpuMI CCSGG 4 cut(s) 346, 876, 1128, 1129
BsaAI YACGTR 2 cut(s) 927, 1407
BsaJI CCNNGG 6 cut(s) 345, 875, 954, 1004, 1127, 1363
BsaWI WCCGGW 2 cut(s) 431, 763
Bsc4I CCNNNNNNNGG 6 cut(s) 424, 425, 556, 641, 652, 848
Bse118I RCCGGY 1 cut(s) 404
Bse3DI GCAATG 2 cut(s) 73, 975
BseBI CCWGG 3 cut(s) 866, 1357, 1365
BseDI CCNNGG 6 cut(s) 345, 875, 954, 1004, 1127, 1363
BseGI GGATG 3 cut(s) 122, 526, 1262
BseLI CCNNNNNNNGG 6 cut(s) 424, 425, 556, 641, 652, 848
BseMI GCAATG 2 cut(s) 73, 975
BseMII CTCAG 1 cut(s) 1416
BseRI GAGGAG 4 cut(s) 212, 215, 218, 1224
BseSI GKGCMC 3 cut(s) 419, 734, 882
BseXI GCAGC 3 cut(s) 65, 987, 1043
BseYI CCCAGC 3 cut(s) 419, 565, 934
Bsh1236I CGCG 1 cut(s) 246
Bsh1285I CGRYCG 1 cut(s) 987
BshFI GGCC 5 cut(s) 344, 645, 834, 1012, 1355
BshNI GGYRCC 3 cut(s) 731, 879, 1367
BsiEI CGRYCG 1 cut(s) 987
BsiHKCI CYCGRG 2 cut(s) 1127, 1325
BsiSI CCGG 6 cut(s) 345, 405, 432, 764, 875, 1128
BslFI GGGAC 4 cut(s) 733, 797, 1144, 1211
BslI CCNNNNNNNGG 6 cut(s) 424, 425, 556, 641, 652, 848
BsmAI GTCTC 1 cut(s) 799
BsmFI GGGAC 4 cut(s) 733, 797, 1144, 1211
BsmI GAATGC 1 cut(s) 1074
BsnI GGCC 5 cut(s) 344, 645, 834, 1012, 1355
BsoBI CYCGRG 2 cut(s) 1127, 1325
Bsp119I TTCGAA 1 cut(s) 1245
Bsp1286I GDGCHC 3 cut(s) 419, 734, 882
Bsp143I GATC 5 cut(s) 600, 607, 686, 900, 984
Bsp19I CCATGG 1 cut(s) 1004
BspACI CCGC 9 cut(s) 325, 446, 570, 728, 828, 831, 931, 1144, 1322
BspANI GGCC 5 cut(s) 344, 645, 834, 1012, 1355
BspCNI CTCAG 1 cut(s) 1417
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 3 cut(s) 496, 919, 1227
BspLI GGNNCC 7 cut(s) 388, 430, 733, 881, 1320, 1361, 1369
BspMI ACCTGC 2 cut(s) 879, 1457
BspPI GGATC 1 cut(s) 602
BspT104I TTCGAA 1 cut(s) 1245
BspT107I GGYRCC 3 cut(s) 731, 879, 1367
BspTI CTTAAG 1 cut(s) 20
BsrBI CCGCTC 1 cut(s) 1324
BsrDI GCAATG 2 cut(s) 73, 975
BsrFI RCCGGY 1 cut(s) 404
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 6 cut(s) 345, 875, 954, 1004, 1127, 1363
BssMI GATC 5 cut(s) 600, 607, 686, 900, 984
BssNAI GTATAC 2 cut(s) 1404, 1422
BssT1I CCWWGG 2 cut(s) 954, 1004
Bst1107I GTATAC 2 cut(s) 1404, 1422
Bst2UI CCWGG 3 cut(s) 866, 1357, 1365
Bst4CI ACNGT 3 cut(s) 1288, 1315, 1345
Bst6I CTCTTC 2 cut(s) 90, 1392
BstAFI CTTAAG 1 cut(s) 20
BstBAI YACGTR 2 cut(s) 927, 1407
BstBI TTCGAA 1 cut(s) 1245
BstC8I GCNNGC 4 cut(s) 37, 730, 1036, 1072
BstDEI CTNAG 3 cut(s) 210, 1185, 1425
BstDSI CCRYGG 1 cut(s) 1004
BstENI CCTNNNNNAGG 2 cut(s) 639, 650
BstF5I GGATG 3 cut(s) 122, 526, 1262
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 5 cut(s) 603, 610, 689, 903, 987
BstMAI GTCTC 1 cut(s) 799
BstMBI GATC 5 cut(s) 600, 607, 686, 900, 984
BstMCI CGRYCG 1 cut(s) 987
BstMWI GCNNNNNNNGC 5 cut(s) 41, 100, 325, 341, 1009
BstNI CCWGG 3 cut(s) 866, 1357, 1365
BstPAI GACNNNNGTC 1 cut(s) 759
BstSCI CCNGG 7 cut(s) 344, 864, 874, 1126, 1127, 1355, 1363
BstSLI GKGCMC 3 cut(s) 419, 734, 882
BstSNI TACGTA 1 cut(s) 1407
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 65, 987, 1043
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 686
BstYI RGATCY 1 cut(s) 686
BstZ17I GTATAC 2 cut(s) 1404, 1422
BsuRI GGCC 5 cut(s) 344, 645, 834, 1012, 1355
BtgI CCRYGG 1 cut(s) 1004
BtgZI GCGATG 1 cut(s) 54
BtrI CACGTC 1 cut(s) 781
BtsCI GGATG 3 cut(s) 122, 526, 1262
BtsIMutI CAGTG 2 cut(s) 1320, 1350
BveI ACCTGC 2 cut(s) 879, 1457
Cac8I GCNNGC 4 cut(s) 37, 730, 1036, 1072
CciI TCATGA 3 cut(s) 496, 919, 1227
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 3 cut(s) 833, 868, 1112
Cfr9I CCCGGG 1 cut(s) 1127
CseI GACGC 1 cut(s) 247
Csp6I GTAC 2 cut(s) 276, 580
CviQI GTAC 2 cut(s) 276, 580
DdeI CTNAG 3 cut(s) 210, 1185, 1425
DpnI GATC 5 cut(s) 602, 609, 688, 902, 986
DpnII GATC 5 cut(s) 600, 607, 686, 900, 984
EaeI YGGCCR 1 cut(s) 1353
Eam1104I CTCTTC 2 cut(s) 90, 1392
EarI CTCTTC 2 cut(s) 90, 1392
EciI GGCGGA 1 cut(s) 435
Eco105I TACGTA 1 cut(s) 1407
Eco130I CCWWGG 2 cut(s) 954, 1004
Eco147I AGGCCT 1 cut(s) 645
Eco32I GATATC 2 cut(s) 1180, 1303
Eco47I GGWCC 2 cut(s) 868, 1112
Eco57I CTGAAG 1 cut(s) 71
Eco88I CYCGRG 2 cut(s) 1127, 1325
EcoNI CCTNNNNNAGG 2 cut(s) 639, 650
EcoO109I RGGNCCY 1 cut(s) 1112
EcoRI GAATTC 2 cut(s) 1088, 1247
EcoRII CCWGG 3 cut(s) 864, 1355, 1363
EcoRV GATATC 2 cut(s) 1180, 1303
EcoT14I CCWWGG 2 cut(s) 954, 1004
ErhI CCWWGG 2 cut(s) 954, 1004
FaqI GGGAC 4 cut(s) 733, 797, 1144, 1211
FauI CCCGC 3 cut(s) 563, 721, 1137
FauNDI CATATG 1 cut(s) 694
FblI GTMKAC 2 cut(s) 1403, 1421
Fnu4HI GCNGC 7 cut(s) 79, 326, 829, 832, 932, 1001, 1032
FokI GGATG 3 cut(s) 129, 533, 1249
Fsp4HI GCNGC 7 cut(s) 79, 326, 829, 832, 932, 1001, 1032
FspBI CTAG 1 cut(s) 809
GluI GCNGC 7 cut(s) 79, 326, 829, 832, 932, 1001, 1032
GsaI CCCAGC 3 cut(s) 423, 569, 938
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 5 cut(s) 344, 645, 834, 1012, 1355
HapII CCGG 6 cut(s) 345, 405, 432, 764, 875, 1128
HgaI GACGC 1 cut(s) 247
HinfI GANTC 3 cut(s) 971, 1231, 1295
HpaII CCGG 6 cut(s) 345, 405, 432, 764, 875, 1128
HphI GGTGA 3 cut(s) 446, 1075, 1118
Hpy166II GTNNAC 8 cut(s) 580, 1051, 1192, 1311, 1341, 1404, 1422, 1456
Hpy188I TCNGA 7 cut(s) 90, 160, 292, 307, 460, 1065, 1300
Hpy188III TCNNGA 9 cut(s) 359, 466, 497, 511, 920, 968, 1228, 1252, 1493
Hpy8I GTNNAC 8 cut(s) 580, 1051, 1192, 1311, 1341, 1404, 1422, 1456
Hpy99I CGWCG 1 cut(s) 263
HpyCH4III ACNGT 3 cut(s) 1288, 1315, 1345
HpyCH4IV ACGT 3 cut(s) 780, 926, 1406
HpyCH4V TGCA 5 cut(s) 319, 722, 980, 1074, 1437
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 100, 325, 341, 1009
HpyF3I CTNAG 3 cut(s) 210, 1185, 1425
HpySE526I ACGT 3 cut(s) 780, 926, 1406
Kzo9I GATC 5 cut(s) 600, 607, 686, 900, 984
LmnI GCTCC 3 cut(s) 255, 392, 562
Lsp1109I GCAGC 3 cut(s) 65, 987, 1043
LweI GCATC 4 cut(s) 31, 67, 107, 511
MaeI CTAG 1 cut(s) 809
MaeII ACGT 3 cut(s) 780, 926, 1406
MaeIII GTNAC 2 cut(s) 216, 434
MalI GATC 5 cut(s) 602, 609, 688, 902, 986
MbiI CCGCTC 1 cut(s) 1324
MboI GATC 5 cut(s) 600, 607, 686, 900, 984
MfeI CAATTG 2 cut(s) 320, 723
MflI RGATCY 1 cut(s) 686
MhlI GDGCHC 3 cut(s) 419, 734, 882
MlsI TGGCCA 1 cut(s) 1355
MluNI TGGCCA 1 cut(s) 1355
MlyI GAGTC 1 cut(s) 1225
MmeI TCCRAC 2 cut(s) 315, 703
Mox20I TGGCCA 1 cut(s) 1355
MroXI GAANNNNTTC 2 cut(s) 354, 1211
MscI TGGCCA 1 cut(s) 1355
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 5 cut(s) 108, 501, 737, 885, 1187
Msp20I TGGCCA 1 cut(s) 1355
MspCI CTTAAG 1 cut(s) 20
MspI CCGG 6 cut(s) 345, 405, 432, 764, 875, 1128
MspR9I CCNGG 7 cut(s) 346, 866, 876, 1128, 1129, 1357, 1365
MunI CAATTG 2 cut(s) 320, 723
Mva1269I GAATGC 1 cut(s) 1074
MvaI CCWGG 3 cut(s) 866, 1357, 1365
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 5 cut(s) 41, 100, 325, 341, 1009
NciI CCSGG 4 cut(s) 346, 876, 1128, 1129
NcoI CCATGG 1 cut(s) 1004
NdeI CATATG 1 cut(s) 694
NdeII GATC 5 cut(s) 600, 607, 686, 900, 984
NlaIV GGNNCC 7 cut(s) 388, 430, 733, 881, 1320, 1361, 1369
NmuCI GTSAC 2 cut(s) 216, 434
NspV TTCGAA 1 cut(s) 1245
OliI CACNNNNGTG 2 cut(s) 108, 1187
PaeR7I CTCGAG 1 cut(s) 1325
PagI TCATGA 3 cut(s) 496, 919, 1227
PceI AGGCCT 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PctI GAATGC 1 cut(s) 1074
PdmI GAANNNNTTC 2 cut(s) 354, 1211
PfeI GAWTC 2 cut(s) 971, 1295
PfoI TCCNGGA 1 cut(s) 864
PkrI GCNGC 7 cut(s) 80, 327, 830, 833, 933, 1002, 1033
Ple19I CGATCG 1 cut(s) 987
PleI GAGTC 1 cut(s) 1225
PpsI GAGTC 1 cut(s) 1225
Ppu21I YACGTR 2 cut(s) 927, 1407
PpuMI RGGWCCY 1 cut(s) 1112
PshAI GACNNNNGTC 1 cut(s) 759
PsiI TTATAA 2 cut(s) 339, 1137
Psp5II RGGWCCY 1 cut(s) 1112
Psp6I CCWGG 3 cut(s) 864, 1355, 1363
PspFI CCCAGC 3 cut(s) 419, 565, 934
PspGI CCWGG 3 cut(s) 864, 1355, 1363
PspN4I GGNNCC 7 cut(s) 388, 430, 733, 881, 1320, 1361, 1369
PspPI GGNCC 3 cut(s) 833, 868, 1112
PspPPI RGGWCCY 1 cut(s) 1112
PspXI VCTCGAGB 1 cut(s) 1325
PsrI GAACNNNNNNTAC 2 cut(s) 1405, 1437
PsuI RGATCY 1 cut(s) 686
PvuI CGATCG 1 cut(s) 987
RsaI GTAC 2 cut(s) 277, 581
RsaNI GTAC 2 cut(s) 276, 580
RseI CAYNNNNRTG 5 cut(s) 108, 501, 737, 885, 1187
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 7 cut(s) 79, 326, 829, 832, 932, 1001, 1032
Sau3AI GATC 5 cut(s) 600, 607, 686, 900, 984
Sau96I GGNCC 3 cut(s) 833, 868, 1112
SchI GAGTC 1 cut(s) 1225
ScrFI CCNGG 7 cut(s) 346, 866, 876, 1128, 1129, 1357, 1365
SduI GDGCHC 3 cut(s) 419, 734, 882
SfaNI GCATC 4 cut(s) 31, 67, 107, 511
Sfr274I CTCGAG 1 cut(s) 1325
SfuI TTCGAA 1 cut(s) 1245
SgrAI CRCCGGYG 1 cut(s) 404
SinI GGWCC 2 cut(s) 868, 1112
SlaI CTCGAG 1 cut(s) 1325
SmaI CCCGGG 1 cut(s) 1129
SmiMI CAYNNNNRTG 5 cut(s) 108, 501, 737, 885, 1187
SmlI CTYRAG 3 cut(s) 20, 1325, 1461
SmoI CTYRAG 3 cut(s) 20, 1325, 1461
SnaBI TACGTA 1 cut(s) 1407
SpeI ACTAGT 1 cut(s) 808
SseBI AGGCCT 1 cut(s) 645
SsiI CCGC 9 cut(s) 325, 446, 570, 728, 828, 831, 931, 1144, 1322
SspMI CTAG 1 cut(s) 809
StuI AGGCCT 1 cut(s) 645
StyD4I CCNGG 7 cut(s) 344, 864, 874, 1126, 1127, 1355, 1363
StyI CCWWGG 2 cut(s) 954, 1004
TaaI ACNGT 3 cut(s) 1288, 1315, 1345
TaiI ACGT 3 cut(s) 783, 929, 1409
TaqI TCGA 4 cut(s) 489, 621, 1245, 1326
TauI GCSGC 4 cut(s) 328, 831, 834, 934
TfiI GAWTC 2 cut(s) 971, 1295
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 2 cut(s) 1320, 1350
TseFI GTSAC 2 cut(s) 216, 434
TseI GCWGC 3 cut(s) 78, 1000, 1031
Tsp45I GTSAC 2 cut(s) 216, 434
TspDTI ATGAA 7 cut(s) 140, 324, 470, 485, 908, 1032, 1216
TspMI CCCGGG 1 cut(s) 1127
TspRI CASTG 2 cut(s) 1320, 1350
Vha464I CTTAAG 1 cut(s) 20
VpaK11BI GGWCC 2 cut(s) 868, 1112
XagI CCTNNNNNAGG 2 cut(s) 639, 650
XapI RAATTY 4 cut(s) 542, 1088, 1247, 1448
XcmI CCANNNNNNNNNTGG 1 cut(s) 798
XhoI CTCGAG 1 cut(s) 1325
XmaI CCCGGG 1 cut(s) 1127
XmiI GTMKAC 2 cut(s) 1403, 1421
XmnI GAANNNNTTC 2 cut(s) 354, 1211
XspI CTAG 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.