Rw1G015600

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000213
Physical Location & Seq
Reverse (-)
34755944 .. 34757249
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G015600.1

Sequence Viewer

Length: 1155 bp
ATGTCCCCCAAAACCAGTCTCAACCTAGCCGACAGAGCCAGCGAAGGCGAAGACGAACGGCATTATCGGCTTCGACGCTGCCGTGAACCACCGCATCATAAGGCTGATAAGCACAGGAGGTCTAAGAAGAAGAGAAGTGAGAAGTTGAAGTTGAACGAGGAAGAGGCTAACAAGTCTCTGTACATATGTCACATTGAGCACCACCCTGGAAAGTGGGTCGCTTATGTTGTCCGCGCCATCAACTTGTCTGATTTGTTGTTATCATCAAAAGACGATGATGGTTTGCAATTACGGCAGGTGGGTTATAAGGCCGGGGATGAACTCCCCGGTTCTGTGGGTTGCGGGGTGTGGGGTCATAGAGATGTTTACGCCTTTGAAACTGATCCCAACAAGCACAAGCAGCCTCGTGATAATAGTAGAATTACCAAGATGGGTGGCATATTAGTTGAAGCCAAGGTCCTTCCTCTGATGGAGGTGGTGGGGGGCAAACTGTATGCATTTTCATATACGCTGTTGGCTAATCCTCCCTCATTTGAGTATAACCGCGGTAGCTTCCTATCTTATGCGGTTACTGGCACCAAGATGTTTGTGTCTCAGGAGAGATGTCCTGTCTTTTGTTTTGATGTAGCTCACCCAGACAGAGGATGGAGATTAGTCTCTTCTATGTGCCAACGCGACCCTTTTCCTTTTGAAAACAAAGCTTTGGTCTTGGACCTGCCAGCGGGGGCTGATGACAAGAAGAAGATAATGTTTGCCTATAGTTTTGTTCGTTTGTATCTACGAGTTTATCTTATGTCCTTGGAAGAAAATCAAGAATCTATCACACGAATTGGTGATTTTAAGCTGCCAAGGTTGCCTCAGGAATATGAATTTGCACAAAAATGTTATTTTGTCCATATAGGAGGTCAGAAAGCCTGCATTTTTGCCCCCGAATTGGTTAGGCCATATAAACAAGGACCTGATATTAACGAGGCTGGGACTCATAGGACACAGGGTGTTGCCATACCATTTCAATTTGAAGTTGATATCACCAAGGTCGACAAGGACGAGAAGAATTGTTTGACCCTCCAATTCATGCCTACTCGTATCTTCGAATTCTATACCAACCCGTCCACTTTTCCTGATCCTGAAGCGGAAGGTTGCTTTGTGCTATAA

Protein Analysis

384

Amino Acids

44.01

Weight (kDa)

8.4

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
AarI CACCTGC 1 cut(s) 286
Acc36I ACCTGC 2 cut(s) 286, 723
AccB1I GGYRCC 1 cut(s) 575
AccI GTMKAC 1 cut(s) 1038
AccII CGCG 3 cut(s) 234, 546, 675
AciI CCGC 8 cut(s) 92, 232, 342, 544, 546, 566, 722, 1133
AclWI GGATC 2 cut(s) 377, 1118
AcsI RAATTY 2 cut(s) 869, 1094
AcuI CTGAAG 1 cut(s) 1149
AdeI CACNNNGTG 1 cut(s) 995
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 3 cut(s) 641, 721, 934
AgsI TTSAA 7 cut(s) 148, 154, 377, 449, 692, 1013, 1019
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 4 cut(s) 552, 629, 701, 844
AluI AGCT 4 cut(s) 552, 629, 701, 844
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 4 cut(s) 23, 180, 597, 661
AlwI GGATC 2 cut(s) 377, 1118
AoxI GGCC 2 cut(s) 309, 941
ApeKI GCWGC 3 cut(s) 78, 400, 844
ApoI RAATTY 2 cut(s) 869, 1094
ArsI GACNNNNNNTTYG 2 cut(s) 690, 722
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 3 cut(s) 457, 712, 956
AsuC2I CCSGG 2 cut(s) 313, 327
AsuHPI GGTGA 3 cut(s) 623, 845, 1021
AsuII TTCGAA 1 cut(s) 1092
AvaII GGWCC 3 cut(s) 457, 712, 956
AxyI CCTNAGG 1 cut(s) 858
BanI GGYRCC 1 cut(s) 575
BauI CACGAG 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 3 cut(s) 65, 412, 831
BccI CCATC 5 cut(s) 245, 272, 424, 463, 639
BceAI ACGGC 3 cut(s) 66, 74, 308
BciT130I CCWGG 1 cut(s) 207
BcnI CCSGG 2 cut(s) 313, 327
BcoDI GTCTC 4 cut(s) 23, 180, 597, 661
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 757
BfuAI ACCTGC 2 cut(s) 286, 723
BisI GCNGC 3 cut(s) 79, 401, 845
BlsI GCNGC 3 cut(s) 80, 402, 846
Bme1390I CCNGG 3 cut(s) 207, 313, 327
Bme18I GGWCC 3 cut(s) 457, 712, 956
BmgT120I GGNCC 3 cut(s) 457, 712, 956
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 3 cut(s) 207, 313, 327
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 1092
BpuMI CCSGG 2 cut(s) 313, 327
BsaJI CCNNGG 8 cut(s) 205, 312, 325, 453, 544, 798, 848, 1032
Bsc4I CCNNNNNNNGG 3 cut(s) 641, 721, 934
Bse1I ACTGG 2 cut(s) 15, 577
Bse21I CCTNAGG 1 cut(s) 858
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 8 cut(s) 205, 312, 325, 453, 544, 798, 848, 1032
BseGI GGATG 2 cut(s) 322, 650
BseLI CCNNNNNNNGG 3 cut(s) 641, 721, 934
BseMII CTCAG 2 cut(s) 608, 872
BseNI ACTGG 2 cut(s) 15, 577
BseXI GCAGC 3 cut(s) 65, 412, 831
BseYI CCCAGC 1 cut(s) 974
Bsh1236I CGCG 3 cut(s) 234, 546, 675
BshFI GGCC 2 cut(s) 311, 943
BshNI GGYRCC 1 cut(s) 575
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 2 cut(s) 312, 327
BslFI GGGAC 1 cut(s) 991
BslI CCNNNNNNNGG 3 cut(s) 641, 721, 934
BsmAI GTCTC 4 cut(s) 23, 180, 597, 661
BsmFI GGGAC 1 cut(s) 991
BsnI GGCC 2 cut(s) 311, 943
Bsp119I TTCGAA 1 cut(s) 1092
Bsp1286I GDGCHC 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 2 cut(s) 382, 1123
BspACI CCGC 8 cut(s) 92, 232, 342, 544, 546, 566, 722, 1133
BspANI GGCC 2 cut(s) 311, 943
BspCNI CTCAG 2 cut(s) 607, 871
BspFNI CGCG 3 cut(s) 234, 546, 675
BspLI GGNNCC 1 cut(s) 577
BspMI ACCTGC 2 cut(s) 286, 723
BspPI GGATC 2 cut(s) 377, 1118
BspT104I TTCGAA 1 cut(s) 1092
BspT107I GGYRCC 1 cut(s) 575
BsrGI TGTACA 1 cut(s) 180
BsrI ACTGG 2 cut(s) 15, 577
BssECI CCNNGG 8 cut(s) 205, 312, 325, 453, 544, 798, 848, 1032
BssMI GATC 2 cut(s) 382, 1123
BssSI CACGAG 1 cut(s) 405
BssT1I CCWWGG 4 cut(s) 453, 798, 848, 1032
Bst2BI CACGAG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 492
Bst6I CTCTTC 3 cut(s) 125, 156, 664
BstAUI TGTACA 1 cut(s) 180
BstBI TTCGAA 1 cut(s) 1092
BstC8I GCNNGC 3 cut(s) 40, 720, 916
BstDEI CTNAG 3 cut(s) 123, 594, 858
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 2 cut(s) 322, 650
BstFNI CGCG 3 cut(s) 234, 546, 675
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 2 cut(s) 385, 1126
BstMAI GTCTC 4 cut(s) 23, 180, 597, 661
BstMBI GATC 2 cut(s) 382, 1123
BstMWI GCNNNNNNNGC 5 cut(s) 35, 67, 292, 400, 853
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 3 cut(s) 205, 311, 325
BstSFI CTRYAG 1 cut(s) 757
BstUI CGCG 3 cut(s) 234, 546, 675
BstV1I GCAGC 3 cut(s) 65, 412, 831
BstV2I GAAGAC 1 cut(s) 57
Bsu36I CCTNAGG 1 cut(s) 858
BsuRI GGCC 2 cut(s) 311, 943
BtgI CCRYGG 1 cut(s) 544
BtsCI GGATG 2 cut(s) 322, 650
BveI ACCTGC 2 cut(s) 286, 723
Cac8I GCNNGC 3 cut(s) 40, 720, 916
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 3 cut(s) 457, 712, 956
Cfr42I CCGCGG 1 cut(s) 547
CseI GACGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 181
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CviAII CATG 1 cut(s) 1075
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 3 cut(s) 123, 594, 858
DpnI GATC 2 cut(s) 384, 1125
DpnII GATC 2 cut(s) 382, 1123
DraIII CACNNNGTG 1 cut(s) 995
Eam1104I CTCTTC 3 cut(s) 125, 156, 664
EarI CTCTTC 3 cut(s) 125, 156, 664
Eco130I CCWWGG 4 cut(s) 453, 798, 848, 1032
Eco32I GATATC 1 cut(s) 1027
Eco47I GGWCC 3 cut(s) 457, 712, 956
Eco57I CTGAAG 1 cut(s) 1149
Eco81I CCTNAGG 1 cut(s) 858
EcoO109I RGGNCCY 2 cut(s) 457, 956
EcoRI GAATTC 1 cut(s) 1094
EcoRII CCWGG 1 cut(s) 205
EcoRV GATATC 1 cut(s) 1027
EcoT14I CCWWGG 4 cut(s) 453, 798, 848, 1032
EcoT22I ATGCAT 1 cut(s) 499
ErhI CCWWGG 4 cut(s) 453, 798, 848, 1032
FaeI CATG 1 cut(s) 1078
FaqI GGGAC 1 cut(s) 991
FatI CATG 1 cut(s) 1074
FauI CCCGC 2 cut(s) 335, 715
FauNDI CATATG 1 cut(s) 185
FblI GTMKAC 1 cut(s) 1038
Fnu4HI GCNGC 3 cut(s) 79, 401, 845
FokI GGATG 2 cut(s) 329, 657
Fsp4HI GCNGC 3 cut(s) 79, 401, 845
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 235
GluI GCNGC 3 cut(s) 79, 401, 845
GsaI CCCAGC 1 cut(s) 978
HaeIII GGCC 2 cut(s) 311, 943
HapII CCGG 2 cut(s) 312, 327
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 236
Hin1II CATG 1 cut(s) 1078
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 1039
HindII GTYRAC 1 cut(s) 1039
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 2 cut(s) 815, 979
HpaII CCGG 2 cut(s) 312, 327
HphI GGTGA 3 cut(s) 623, 845, 1021
Hpy166II GTNNAC 4 cut(s) 86, 367, 1039, 1113
Hpy188I TCNGA 3 cut(s) 250, 468, 909
Hpy188III TCNNGA 6 cut(s) 407, 596, 812, 860, 1121, 1127
Hpy8I GTNNAC 4 cut(s) 86, 367, 1039, 1113
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 3 cut(s) 38, 470, 1130
HpyCH4III ACNGT 1 cut(s) 492
HpyCH4V TGCA 4 cut(s) 286, 497, 875, 918
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 67, 292, 400, 853
HpyF3I CTNAG 3 cut(s) 123, 594, 858
Hsp92II CATG 1 cut(s) 1078
HspAI GCGC 1 cut(s) 234
KspI CCGCGG 1 cut(s) 547
Kzo9I GATC 2 cut(s) 382, 1123
Lsp1109I GCAGC 3 cut(s) 65, 412, 831
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 188, 568
MalI GATC 2 cut(s) 384, 1125
MboI GATC 2 cut(s) 382, 1123
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 9 cut(s) 287, 420, 828, 869, 932, 1013, 1054, 1070, 1094
MlyI GAGTC 1 cut(s) 973
Mph1103I ATGCAT 1 cut(s) 499
MseI TTAA 2 cut(s) 840, 966
MslI CAYNNNNRTG 3 cut(s) 360, 581, 880
MspA1I CMGCKG 2 cut(s) 546, 722
MspI CCGG 2 cut(s) 312, 327
MspR9I CCNGG 3 cut(s) 207, 313, 327
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 3 cut(s) 234, 546, 675
MwoI GCNNNNNNNGC 5 cut(s) 35, 67, 292, 400, 853
NciI CCSGG 2 cut(s) 313, 327
NdeI CATATG 1 cut(s) 185
NdeII GATC 2 cut(s) 382, 1123
NlaIII CATG 1 cut(s) 1078
NlaIV GGNNCC 1 cut(s) 577
NmuCI GTSAC 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 499
NspV TTCGAA 1 cut(s) 1092
PaqCI CACCTGC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 1044
PfeI GAWTC 1 cut(s) 815
PkrI GCNGC 3 cut(s) 80, 402, 846
PleI GAGTC 1 cut(s) 973
PpsI GAGTC 1 cut(s) 973
PpuMI RGGWCCY 2 cut(s) 457, 956
PsiI TTATAA 1 cut(s) 306
Psp5II RGGWCCY 2 cut(s) 457, 956
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 974
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 3 cut(s) 457, 712, 956
PspPPI RGGWCCY 2 cut(s) 457, 956
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 3 cut(s) 360, 581, 880
SacII CCGCGG 1 cut(s) 547
SalI GTCGAC 1 cut(s) 1037
SaqAI TTAA 2 cut(s) 840, 966
SatI GCNGC 3 cut(s) 79, 401, 845
Sau3AI GATC 2 cut(s) 382, 1123
Sau96I GGNCC 3 cut(s) 457, 712, 956
SchI GAGTC 1 cut(s) 973
ScrFI CCNGG 3 cut(s) 207, 313, 327
SduI GDGCHC 1 cut(s) 201
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 757
Sfr303I CCGCGG 1 cut(s) 547
SfuI TTCGAA 1 cut(s) 1092
SgrBI CCGCGG 1 cut(s) 547
SinI GGWCC 3 cut(s) 457, 712, 956
SmiMI CAYNNNNRTG 3 cut(s) 360, 581, 880
Sse9I AATT 9 cut(s) 287, 420, 828, 869, 932, 1013, 1054, 1070, 1094
SsiI CCGC 8 cut(s) 92, 232, 342, 544, 546, 566, 722, 1133
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 3 cut(s) 205, 311, 325
StyI CCWWGG 4 cut(s) 453, 798, 848, 1032
TaaI ACNGT 1 cut(s) 492
TaqI TCGA 3 cut(s) 73, 1038, 1092
TasI AATT 9 cut(s) 287, 420, 828, 869, 932, 1013, 1054, 1070, 1094
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 1 cut(s) 815
Tru1I TTAA 2 cut(s) 840, 966
Tru9I TTAA 2 cut(s) 840, 966
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 3 cut(s) 78, 400, 844
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 4 cut(s) 333, 492, 882, 1063
VpaK11BI GGWCC 3 cut(s) 457, 712, 956
XapI RAATTY 2 cut(s) 869, 1094
XcmI CCANNNNNNNNNTGG 1 cut(s) 642
XmiI GTMKAC 1 cut(s) 1038
XspI CTAG 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.