Rmu_sc0021487.1_g000001

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021487.1
OG0000213
Physical Location & Seq
Reverse (-)
2 .. 899
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021487.1_g000001.1.cds

Sequence Viewer

Length: 898 bp
ctgatagttttgtttctccccggatctgtgggttgcggtgtttggggatcccaaattgttttcacaggcggcgtgacacccagctcccctcacggcttcaggaatataggtctcgactcagtttggcatacaaatgtttatgcctttgaaacacacacaaatgagatcagaaagcttgatgccaatttacaaggagggaaattgtaccctctgacggtggagctgggcggcaaactgtacgctctttcctataggctggtcggccatcctccctcatttgaggtatttgaccctaaaataggcaagtgggaaggtttgccccggcctccatttttccaagttggctctccatattatgatcatgccaacttctcttacgcaatcgccggcaccaagatctttgcctcccatgaagaatgtcctgtgttctgctttgacgtcgcccatccagacagagattggagactggtctctactatgtgccggggtggccctttcccctttgataacaaagttgcattagtcctggacctgcagggggactatgacaagaaaataatgtttgcctacagtcatgagccttggcgtctatgggtatatcttatgtcattgtctgaaaaccaagaaactatcacaaaaatcggtgatctgaggatgccagtgttgcctgatgaattgggtttgccacaacgctgtgaatttttgcacattggaggtcagaaagcgtgccttgttgtcaccgaaattggcgtccgtgctgaagacgctcctgcttataatgagctcggtactcataagagacaaggtgcagtcattctatttcaatttgaagttgatatcaccaaggtggacaaggacaagaaaaattgtttagcactccaattcatgcctcttcgca

Protein Analysis

299

Amino Acids

33.61

Weight (kDa)

6.22

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
AatII GACGTC 1 cut(s) 441
Acc36I ACCTGC 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 389
AciI CCGC 3 cut(s) 36, 69, 228
AclWI GGATC 3 cut(s) 31, 42, 55
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 2 cut(s) 82, 780
AcyI GRCGYC 3 cut(s) 438, 586, 750
AfaI GTAC 3 cut(s) 206, 239, 790
AfiI CCNNNNNNNGG 3 cut(s) 214, 299, 538
AgsI TTSAA 3 cut(s) 149, 824, 830
AjnI CCWGG 1 cut(s) 525
AleI CACNNNNGTG 1 cut(s) 845
AluBI AGCT 4 cut(s) 84, 175, 223, 784
AluI AGCT 4 cut(s) 84, 175, 223, 784
Alw21I GWGCWC 1 cut(s) 786
Alw26I GTCTC 4 cut(s) 116, 457, 475, 793
AlwI GGATC 3 cut(s) 31, 42, 55
AoxI GGCC 3 cut(s) 262, 323, 490
ApoI RAATTY 1 cut(s) 698
ArsI GACNNNNNNTTYG 2 cut(s) 735, 767
AspS9I GGNCC 2 cut(s) 491, 529
AsuC2I CCSGG 3 cut(s) 21, 322, 485
AsuHPI GGTGA 3 cut(s) 656, 730, 832
AvaII GGWCC 1 cut(s) 529
BamHI GGATCC 1 cut(s) 47
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 786
BbsI GAAGAC 1 cut(s) 768
Bbv12I GWGCWC 1 cut(s) 786
BccI CCATC 2 cut(s) 273, 453
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 527
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 3 cut(s) 21, 322, 485
BcoDI GTCTC 4 cut(s) 116, 457, 475, 793
BfmI CTRYAG 3 cut(s) 250, 533, 568
BfuAI ACCTGC 1 cut(s) 540
BglI GCCNNNNNGGC 1 cut(s) 489
BglII AGATCT 1 cut(s) 396
BisI GCNGC 2 cut(s) 70, 229
BlsI GCNGC 2 cut(s) 71, 230
Bme1390I CCNGG 4 cut(s) 21, 322, 485, 527
Bme18I GGWCC 1 cut(s) 529
BmgT120I GGNCC 2 cut(s) 491, 529
BmiI GGNNCC 2 cut(s) 49, 391
BmrFI CCNGG 4 cut(s) 21, 322, 485, 527
BmsI GCATC 2 cut(s) 169, 645
BpiI GAAGAC 1 cut(s) 768
BpuMI CCSGG 3 cut(s) 21, 322, 485
BsaHI GRCGYC 3 cut(s) 438, 586, 750
BsaI GGTCTC 2 cut(s) 116, 475
BsaJI CCNNGG 5 cut(s) 19, 320, 484, 581, 843
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 299, 538
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 2 cut(s) 471, 659
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 5 cut(s) 19, 320, 484, 581, 843
BseGI GGATG 3 cut(s) 265, 445, 660
BseLI CCNNNNNNNGG 3 cut(s) 214, 299, 538
BseMII CTCAG 2 cut(s) 132, 641
BseNI ACTGG 2 cut(s) 471, 659
BseYI CCCAGC 2 cut(s) 80, 223
BsgI GTGCAG 1 cut(s) 828
BshFI GGCC 3 cut(s) 264, 325, 492
BshNI GGYRCC 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 786
BsiSI CCGG 4 cut(s) 21, 322, 387, 484
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 3 cut(s) 214, 299, 538
BsmAI GTCTC 4 cut(s) 116, 457, 475, 793
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 3 cut(s) 264, 325, 492
Bso31I GGTCTC 2 cut(s) 116, 475
Bsp1286I GDGCHC 1 cut(s) 786
Bsp143I GATC 6 cut(s) 23, 47, 165, 358, 396, 646
BspACI CCGC 3 cut(s) 36, 69, 228
BspANI GGCC 3 cut(s) 264, 325, 492
BspCNI CTCAG 2 cut(s) 131, 642
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 2 cut(s) 49, 391
BspMAI CTGCAG 1 cut(s) 537
BspMI ACCTGC 1 cut(s) 540
BspPI GGATC 3 cut(s) 31, 42, 55
BspT107I GGYRCC 1 cut(s) 389
BspTNI GGTCTC 2 cut(s) 116, 475
BsrFI RCCGGY 1 cut(s) 386
BsrI ACTGG 2 cut(s) 471, 659
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 5 cut(s) 19, 320, 484, 581, 843
BssMI GATC 6 cut(s) 23, 47, 165, 358, 396, 646
BssNI GRCGYC 3 cut(s) 438, 586, 750
BssT1I CCWWGG 2 cut(s) 581, 843
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 3 cut(s) 217, 237, 572
BstACI GRCGYC 3 cut(s) 438, 586, 750
BstC8I GCNNGC 2 cut(s) 388, 727
BstDEI CTNAG 2 cut(s) 118, 650
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 3 cut(s) 265, 445, 660
BstKTI GATC 6 cut(s) 26, 50, 168, 361, 399, 649
BstMAI GTCTC 4 cut(s) 116, 457, 475, 793
BstMBI GATC 6 cut(s) 23, 47, 165, 358, 396, 646
BstMWI GCNNNNNNNGC 3 cut(s) 489, 664, 764
BstNI CCWGG 1 cut(s) 527
BstSCI CCNGG 4 cut(s) 19, 320, 483, 525
BstSFI CTRYAG 3 cut(s) 250, 533, 568
BstV2I GAAGAC 1 cut(s) 768
BstX2I RGATCY 3 cut(s) 23, 47, 396
BstYI RGATCY 3 cut(s) 23, 47, 396
BsuRI GGCC 3 cut(s) 264, 325, 492
BtsCI GGATG 3 cut(s) 265, 445, 660
BtsIMutI CAGTG 1 cut(s) 666
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 2 cut(s) 388, 727
CciI TCATGA 1 cut(s) 574
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 2 cut(s) 491, 529
CseI GACGC 3 cut(s) 575, 739, 773
Csp6I GTAC 3 cut(s) 205, 238, 789
CviAII CATG 4 cut(s) 362, 410, 575, 886
CviQI GTAC 3 cut(s) 205, 238, 789
DdeI CTNAG 2 cut(s) 118, 650
DpnI GATC 6 cut(s) 25, 49, 167, 360, 398, 648
DpnII GATC 6 cut(s) 23, 47, 165, 358, 396, 646
EaeI YGGCCR 1 cut(s) 262
Ecl136II GAGCTC 1 cut(s) 784
Eco130I CCWWGG 2 cut(s) 581, 843
Eco24I GRGCYC 1 cut(s) 786
Eco31I GGTCTC 2 cut(s) 116, 475
Eco32I GATATC 1 cut(s) 838
Eco47I GGWCC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 784
Eco57I CTGAAG 2 cut(s) 82, 780
EcoICRI GAGCTC 1 cut(s) 784
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 525
EcoRV GATATC 1 cut(s) 838
EcoT14I CCWWGG 2 cut(s) 581, 843
EcoT38I GRGCYC 1 cut(s) 786
ErhI CCWWGG 2 cut(s) 581, 843
FaeI CATG 4 cut(s) 365, 413, 578, 889
FalI AAGNNNNNCTT 2 cut(s) 714, 746
FaqI GGGAC 1 cut(s) 554
FatI CATG 4 cut(s) 361, 409, 574, 885
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 70, 229
FokI GGATG 3 cut(s) 252, 432, 667
FriOI GRGCYC 1 cut(s) 786
Fsp4HI GCNGC 2 cut(s) 70, 229
GluI GCNGC 2 cut(s) 70, 229
GsaI CCCAGC 2 cut(s) 84, 227
HaeIII GGCC 3 cut(s) 264, 325, 492
HapII CCGG 4 cut(s) 21, 322, 387, 484
HgaI GACGC 3 cut(s) 575, 739, 773
Hin1I GRCGYC 3 cut(s) 438, 586, 750
Hin1II CATG 4 cut(s) 365, 413, 578, 889
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 116
HpaII CCGG 4 cut(s) 21, 322, 387, 484
HphI GGTGA 3 cut(s) 656, 730, 832
Hpy166II GTNNAC 1 cut(s) 850
Hpy188I TCNGA 5 cut(s) 170, 213, 616, 651, 720
Hpy188III TCNNGA 4 cut(s) 100, 113, 449, 575
Hpy8I GTNNAC 1 cut(s) 850
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 3 cut(s) 217, 237, 572
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 4 cut(s) 518, 535, 706, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 489, 664, 764
HpyF3I CTNAG 2 cut(s) 118, 650
HpySE526I ACGT 1 cut(s) 438
Hsp92I GRCGYC 3 cut(s) 438, 586, 750
Hsp92II CATG 4 cut(s) 365, 413, 578, 889
KroI GCCGGC 1 cut(s) 386
KroNI GCCGGC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 6 cut(s) 23, 47, 165, 358, 396, 646
LmnI GCTCC 3 cut(s) 89, 220, 772
LweI GCATC 2 cut(s) 169, 645
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 73, 736
MalI GATC 6 cut(s) 25, 49, 167, 360, 398, 648
MboI GATC 6 cut(s) 23, 47, 165, 358, 396, 646
MboII GAAGA 3 cut(s) 425, 773, 884
MflI RGATCY 3 cut(s) 23, 47, 396
MhlI GDGCHC 1 cut(s) 786
MluCI AATT 9 cut(s) 54, 184, 200, 674, 698, 744, 824, 865, 881
MlyI GAGTC 1 cut(s) 110
MroNI GCCGGC 1 cut(s) 386
MslI CAYNNNNRTG 3 cut(s) 132, 159, 845
MspI CCGG 4 cut(s) 21, 322, 387, 484
MspR9I CCNGG 4 cut(s) 21, 322, 485, 527
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 3 cut(s) 489, 664, 764
NaeI GCCGGC 1 cut(s) 388
NciI CCSGG 3 cut(s) 21, 322, 485
NdeII GATC 6 cut(s) 23, 47, 165, 358, 396, 646
NgoMIV GCCGGC 1 cut(s) 386
NlaIII CATG 4 cut(s) 365, 413, 578, 889
NlaIV GGNNCC 2 cut(s) 49, 391
NmuCI GTSAC 2 cut(s) 73, 736
OliI CACNNNNGTG 1 cut(s) 845
PagI TCATGA 1 cut(s) 574
PdiI GCCGGC 1 cut(s) 388
PfoI TCCNGGA 1 cut(s) 525
PkrI GCNGC 2 cut(s) 71, 230
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PsiI TTATAA 1 cut(s) 777
Psp124BI GAGCTC 1 cut(s) 786
Psp6I CCWGG 1 cut(s) 525
PspFI CCCAGC 2 cut(s) 80, 223
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 2 cut(s) 49, 391
PspPI GGNCC 2 cut(s) 491, 529
PstI CTGCAG 1 cut(s) 537
PsuI RGATCY 3 cut(s) 23, 47, 396
RsaI GTAC 3 cut(s) 206, 239, 790
RsaNI GTAC 3 cut(s) 205, 238, 789
RseI CAYNNNNRTG 3 cut(s) 132, 159, 845
SacI GAGCTC 1 cut(s) 786
SatI GCNGC 2 cut(s) 70, 229
Sau3AI GATC 6 cut(s) 23, 47, 165, 358, 396, 646
Sau96I GGNCC 2 cut(s) 491, 529
SbfI CCTGCAGG 1 cut(s) 537
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 4 cut(s) 21, 322, 485, 527
SdaI CCTGCAGG 1 cut(s) 537
SduI GDGCHC 1 cut(s) 786
SfaNI GCATC 2 cut(s) 169, 645
SfcI CTRYAG 3 cut(s) 250, 533, 568
SinI GGWCC 1 cut(s) 529
SmiMI CAYNNNNRTG 3 cut(s) 132, 159, 845
Sse8387I CCTGCAGG 1 cut(s) 537
Sse9I AATT 9 cut(s) 54, 184, 200, 674, 698, 744, 824, 865, 881
SsiI CCGC 3 cut(s) 36, 69, 228
SstI GAGCTC 1 cut(s) 786
StyD4I CCNGG 4 cut(s) 19, 320, 483, 525
StyI CCWWGG 2 cut(s) 581, 843
TaaI ACNGT 3 cut(s) 217, 237, 572
TaiI ACGT 1 cut(s) 441
TaqI TCGA 1 cut(s) 114
TasI AATT 9 cut(s) 54, 184, 200, 674, 698, 744, 824, 865, 881
TauI GCSGC 2 cut(s) 72, 231
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 2 cut(s) 73, 736
Tsp45I GTSAC 2 cut(s) 73, 736
TspDTI ATGAA 3 cut(s) 426, 687, 874
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 1 cut(s) 666
VpaK11BI GGWCC 1 cut(s) 529
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 1 cut(s) 698
XcmI CCANNNNNNNNNTGG 1 cut(s) 456
ZraI GACGTC 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.