Rw2G023940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000213
Physical Location & Seq
Forward (+)
35185277 .. 35186551
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G023940.1

Sequence Viewer

Length: 915 bp
ATGTCTATGTCCTCCAAAAAACCGCTTGACCTAACCACCAGCGACGGCGAAGAAGAGAGGCAGCAACACCCGCTCCGGCAGTACAGTGAACATCGGCATAAGGCTCATAAGCATACGCGTGATGGGAAGAAGAAGAAGATGAAAGAGACGACGAAGCCCAAGTTGGAGTTGGAGGAGGCTAATAAGTCATTCTACATGTGTTGTCTAGAGCACAGCAGAGACTGGGTGGCTTATGTTGTCCGCACCATCAAACTGTCGGATTTGTTATCATCTTCGGCGGTGGGGGACGATCCACCGCGATTACGGCAAGTGGCTTATGAGGCCGGTTCGCATCTCCCCGGATCTGTGGGTTGCGGTGTTTGGGGATCTCAAATTGTTTTCGCCGGCGGCGTGACACCCAGCTCCCCTTACGGCTTCAGGACAATAGTCCCTACTATGTGCCGGGGTGGCCCTTTTCCCTTCGATAACAAAGCTTTAGTCCTGGACCTGCAGGGGGACGATGACAAGAAAATAATGTTTGCCTACAGTTATGAGCCTTGGCGTCTATGGGTATATCTTATGTCATTGTCTGAAAACCAAGAAATTATCACAAAAATCGGTGAGCTGAGGATGCCGGTGTTGCCTTATGAATTGGGTTCACCACAACGCTGTGAATTTTTGCACATAGGAGGTCAGAAAGCCTGCCTTGTTGTCACCGAATTCGACTTCCGTGATGAAGACGCTCCTGCCTCTAGTGGTACTCACAAGAGACAGGGTGCAGTCATACCATTTCAATTTGAGGTTGATATCGCCCAGGTGGACAAGGACAAGAAAAATTGTTTAACACTCCAATTCATGCCTCTTCGCAGCTTCGAATACCAGACCAACCCATCCACTTTTCCTGCACCTGAAACGGTTGGTTGCTTTCTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

304

Amino Acids

34.39

Weight (kDa)

6.76

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 495
AccBSI CCGCTC 1 cut(s) 73
AccII CGCG 2 cut(s) 118, 298
AciI CCGC 7 cut(s) 23, 71, 241, 278, 296, 354, 387
AclWI GGATC 3 cut(s) 284, 349, 373
AcsI RAATTY 2 cut(s) 653, 698
AcuI CTGAAG 1 cut(s) 400
AcyI GRCGYC 1 cut(s) 541
AfaI GTAC 2 cut(s) 83, 739
AfiI CCNNNNNNNGG 1 cut(s) 493
AflIII ACRYGT 2 cut(s) 116, 195
AgsI TTSAA 1 cut(s) 773
AjnI CCWGG 2 cut(s) 480, 792
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 4 cut(s) 402, 473, 604, 849
AluI AGCT 4 cut(s) 402, 473, 604, 849
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 3 cut(s) 140, 213, 742
AlwI GGATC 3 cut(s) 284, 349, 373
AlwNI CAGNNNCTG 1 cut(s) 222
AoxI GGCC 2 cut(s) 321, 448
ApeKI GCWGC 2 cut(s) 61, 846
ApoI RAATTY 2 cut(s) 653, 698
ArsI GACNNNNNNTTYG 2 cut(s) 462, 494
AspS9I GGNCC 2 cut(s) 449, 484
AsuC2I CCSGG 2 cut(s) 339, 443
AsuHPI GGTGA 3 cut(s) 611, 630, 685
AsuII TTCGAA 1 cut(s) 852
AvaII GGWCC 1 cut(s) 484
BbsI GAAGAC 1 cut(s) 723
Bbv12I GWGCWC 1 cut(s) 213
BbvCI CCTCAGC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 73, 858
BccI CCATC 3 cut(s) 116, 254, 877
BceAI ACGGC 3 cut(s) 61, 320, 427
BciT130I CCWGG 2 cut(s) 482, 794
BcnI CCSGG 2 cut(s) 339, 443
BcoDI GTCTC 3 cut(s) 140, 213, 742
BfaI CTAG 2 cut(s) 206, 732
BfmI CTRYAG 2 cut(s) 488, 523
BfuAI ACCTGC 1 cut(s) 495
BglI GCCNNNNNGGC 1 cut(s) 447
BisI GCNGC 3 cut(s) 62, 388, 847
BlsI GCNGC 3 cut(s) 63, 389, 848
Bme1390I CCNGG 4 cut(s) 339, 443, 482, 794
Bme18I GGWCC 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 449, 484
BmrFI CCNGG 4 cut(s) 339, 443, 482, 794
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 2 cut(s) 340, 600
BmuI ACTGGG 1 cut(s) 232
BoxI GACNNNNGTC 1 cut(s) 425
BpiI GAAGAC 1 cut(s) 723
Bpu10I CCTNAGC 1 cut(s) 605
Bpu14I TTCGAA 1 cut(s) 852
BpuMI CCSGG 2 cut(s) 339, 443
BsaHI GRCGYC 1 cut(s) 541
BsaJI CCNNGG 4 cut(s) 337, 442, 536, 792
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 493
Bse118I RCCGGY 3 cut(s) 323, 383, 613
Bse1I ACTGG 1 cut(s) 227
BseBI CCWGG 2 cut(s) 482, 794
BseDI CCNNGG 4 cut(s) 337, 442, 536, 792
BseGI GGATG 2 cut(s) 615, 869
BseLI CCNNNNNNNGG 1 cut(s) 493
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 73, 858
BseYI CCCAGC 1 cut(s) 398
BsgI GTGCAG 2 cut(s) 777, 867
Bsh1236I CGCG 2 cut(s) 118, 298
BshFI GGCC 2 cut(s) 323, 450
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 6 cut(s) 76, 324, 339, 384, 442, 614
BslFI GGGAC 3 cut(s) 299, 413, 509
BslI CCNNNNNNNGG 1 cut(s) 493
BsmAI GTCTC 3 cut(s) 140, 213, 742
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 3 cut(s) 299, 413, 509
BsnI GGCC 2 cut(s) 323, 450
Bsp119I TTCGAA 1 cut(s) 852
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 3 cut(s) 289, 341, 365
BspACI CCGC 7 cut(s) 23, 71, 241, 278, 296, 354, 387
BspANI GGCC 2 cut(s) 323, 450
BspCNI CTCAG 1 cut(s) 597
BspFNI CGCG 2 cut(s) 118, 298
BspMAI CTGCAG 1 cut(s) 492
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 3 cut(s) 284, 349, 373
BspT104I TTCGAA 1 cut(s) 852
BsrBI CCGCTC 1 cut(s) 73
BsrFI RCCGGY 3 cut(s) 323, 383, 613
BsrI ACTGG 1 cut(s) 227
BssAI RCCGGY 3 cut(s) 323, 383, 613
BssECI CCNNGG 4 cut(s) 337, 442, 536, 792
BssMI GATC 3 cut(s) 289, 341, 365
BssNI GRCGYC 1 cut(s) 541
BssT1I CCWWGG 1 cut(s) 536
Bst2UI CCWGG 2 cut(s) 482, 794
Bst4CI ACNGT 4 cut(s) 86, 255, 527, 895
Bst6I CTCTTC 2 cut(s) 48, 846
BstACI GRCGYC 1 cut(s) 541
BstBI TTCGAA 1 cut(s) 852
BstC8I GCNNGC 2 cut(s) 385, 682
BstDEI CTNAG 1 cut(s) 605
BstF5I GGATG 2 cut(s) 615, 869
BstFNI CGCG 2 cut(s) 118, 298
BstKTI GATC 3 cut(s) 292, 344, 368
BstMAI GTCTC 3 cut(s) 140, 213, 742
BstMBI GATC 3 cut(s) 289, 341, 365
BstMWI GCNNNNNNNGC 6 cut(s) 70, 304, 320, 447, 610, 619
BstNI CCWGG 2 cut(s) 482, 794
BstNSI RCATGY 1 cut(s) 199
BstPAI GACNNNNGTC 1 cut(s) 425
BstSCI CCNGG 4 cut(s) 337, 441, 480, 792
BstSFI CTRYAG 2 cut(s) 488, 523
BstUI CGCG 2 cut(s) 118, 298
BstV1I GCAGC 2 cut(s) 73, 858
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 2 cut(s) 341, 365
BstYI RGATCY 2 cut(s) 341, 365
BsuRI GGCC 2 cut(s) 323, 450
BtsCI GGATG 2 cut(s) 615, 869
BtsIMutI CAGTG 1 cut(s) 91
BveI ACCTGC 1 cut(s) 495
Cac8I GCNNGC 2 cut(s) 385, 682
CaiI CAGNNNCTG 1 cut(s) 222
Cfr10I RCCGGY 3 cut(s) 323, 383, 613
Cfr13I GGNCC 2 cut(s) 449, 484
CseI GACGC 2 cut(s) 530, 728
Csp6I GTAC 2 cut(s) 82, 738
CviAII CATG 2 cut(s) 196, 835
CviQI GTAC 2 cut(s) 82, 738
DdeI CTNAG 1 cut(s) 605
DpnI GATC 3 cut(s) 291, 343, 367
DpnII GATC 3 cut(s) 289, 341, 365
Eam1104I CTCTTC 2 cut(s) 48, 846
EarI CTCTTC 2 cut(s) 48, 846
Eco130I CCWWGG 1 cut(s) 536
Eco32I GATATC 1 cut(s) 787
Eco47I GGWCC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 698
EcoRII CCWGG 2 cut(s) 480, 792
EcoRV GATATC 1 cut(s) 787
EcoT14I CCWWGG 1 cut(s) 536
ErhI CCWWGG 1 cut(s) 536
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 2 cut(s) 199, 838
FalI AAGNNNNNCTT 2 cut(s) 669, 701
FaqI GGGAC 3 cut(s) 299, 413, 509
FatI CATG 2 cut(s) 195, 834
FauI CCCGC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 62, 388, 847
FokI GGATG 2 cut(s) 622, 856
Fsp4HI GCNGC 3 cut(s) 62, 388, 847
FspBI CTAG 2 cut(s) 206, 732
GluI GCNGC 3 cut(s) 62, 388, 847
GsaI CCCAGC 1 cut(s) 402
HaeIII GGCC 2 cut(s) 323, 450
HapII CCGG 6 cut(s) 76, 324, 339, 384, 442, 614
HgaI GACGC 2 cut(s) 530, 728
Hin1I GRCGYC 1 cut(s) 541
Hin1II CATG 2 cut(s) 199, 838
HindIII AAGCTT 1 cut(s) 471
HpaII CCGG 6 cut(s) 76, 324, 339, 384, 442, 614
HphI GGTGA 3 cut(s) 611, 630, 685
Hpy166II GTNNAC 3 cut(s) 89, 638, 799
Hpy188I TCNGA 3 cut(s) 259, 571, 675
Hpy188III TCNNGA 2 cut(s) 206, 418
Hpy8I GTNNAC 3 cut(s) 89, 638, 799
Hpy99I CGWCG 2 cut(s) 47, 154
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 4 cut(s) 86, 255, 527, 895
HpyCH4V TGCA 4 cut(s) 490, 661, 758, 884
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 304, 320, 447, 610, 619
HpyF3I CTNAG 1 cut(s) 605
Hsp92I GRCGYC 1 cut(s) 541
Hsp92II CATG 2 cut(s) 199, 838
KroI GCCGGC 1 cut(s) 383
KroNI GCCGGC 1 cut(s) 385
Kzo9I GATC 3 cut(s) 289, 341, 365
LmnI GCTCC 3 cut(s) 78, 407, 727
Lsp1109I GCAGC 2 cut(s) 73, 858
LweI GCATC 2 cut(s) 340, 600
MaeI CTAG 2 cut(s) 206, 732
MaeIII GTNAC 2 cut(s) 391, 691
MalI GATC 3 cut(s) 291, 343, 367
MbiI CCGCTC 1 cut(s) 73
MboI GATC 3 cut(s) 289, 341, 365
MboII GAAGA 9 cut(s) 62, 65, 139, 142, 145, 148, 264, 728, 833
MflI RGATCY 2 cut(s) 341, 365
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 8 cut(s) 372, 582, 629, 653, 698, 773, 814, 830
MluI ACGCGT 1 cut(s) 116
MmeI TCCRAC 3 cut(s) 144, 150, 237
MreI CGCCGGCG 1 cut(s) 383
MroNI GCCGGC 1 cut(s) 383
MseI TTAA 1 cut(s) 821
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 6 cut(s) 76, 324, 339, 384, 442, 614
MspR9I CCNGG 4 cut(s) 339, 443, 482, 794
MvaI CCWGG 2 cut(s) 482, 794
MvnI CGCG 2 cut(s) 118, 298
MwoI GCNNNNNNNGC 6 cut(s) 70, 304, 320, 447, 610, 619
NaeI GCCGGC 1 cut(s) 385
NciI CCSGG 2 cut(s) 339, 443
NdeII GATC 3 cut(s) 289, 341, 365
NgoMIV GCCGGC 1 cut(s) 383
NlaIII CATG 2 cut(s) 199, 838
NmuCI GTSAC 2 cut(s) 391, 691
NspI RCATGY 1 cut(s) 199
NspV TTCGAA 1 cut(s) 852
PciI ACATGT 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PdiI GCCGGC 1 cut(s) 385
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 3 cut(s) 63, 389, 848
PscI ACATGT 1 cut(s) 195
PshAI GACNNNNGTC 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 480, 792
PspFI CCCAGC 1 cut(s) 398
PspGI CCWGG 2 cut(s) 480, 792
PspPI GGNCC 2 cut(s) 449, 484
PstI CTGCAG 1 cut(s) 492
PstNI CAGNNNCTG 1 cut(s) 222
PsuI RGATCY 2 cut(s) 341, 365
RsaI GTAC 2 cut(s) 83, 739
RsaNI GTAC 2 cut(s) 82, 738
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 1 cut(s) 821
SatI GCNGC 3 cut(s) 62, 388, 847
Sau3AI GATC 3 cut(s) 289, 341, 365
Sau96I GGNCC 2 cut(s) 449, 484
SbfI CCTGCAGG 1 cut(s) 492
ScrFI CCNGG 4 cut(s) 339, 443, 482, 794
SdaI CCTGCAGG 1 cut(s) 492
SduI GDGCHC 1 cut(s) 213
SfaNI GCATC 2 cut(s) 340, 600
SfcI CTRYAG 2 cut(s) 488, 523
SfuI TTCGAA 1 cut(s) 852
SgrAI CRCCGGYG 1 cut(s) 383
SinI GGWCC 1 cut(s) 484
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse8387I CCTGCAGG 1 cut(s) 492
Sse9I AATT 8 cut(s) 372, 582, 629, 653, 698, 773, 814, 830
SsiI CCGC 7 cut(s) 23, 71, 241, 278, 296, 354, 387
SspMI CTAG 2 cut(s) 206, 732
StyD4I CCNGG 4 cut(s) 337, 441, 480, 792
StyI CCWWGG 1 cut(s) 536
TaaI ACNGT 4 cut(s) 86, 255, 527, 895
TaqI TCGA 3 cut(s) 462, 702, 852
TasI AATT 8 cut(s) 372, 582, 629, 653, 698, 773, 814, 830
TatI WGTACW 1 cut(s) 81
TauI GCSGC 1 cut(s) 390
Tru1I TTAA 1 cut(s) 821
Tru9I TTAA 1 cut(s) 821
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 2 cut(s) 391, 691
TseI GCWGC 2 cut(s) 61, 846
Tsp45I GTSAC 2 cut(s) 391, 691
TspDTI ATGAA 4 cut(s) 155, 642, 729, 823
TspGWI ACGGA 1 cut(s) 698
TspRI CASTG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 2 cut(s) 653, 698
XbaI TCTAGA 1 cut(s) 205
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 2 cut(s) 206, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.