Prupe.6G029800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000213
Physical Location & Seq
Forward (+)
2331973 .. 2333300
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G029800.1

Sequence Viewer

Length: 828 bp
ATGGAAGATGGTTTTGCTTTTCAGATGCAAAGGGTACCTATCCCTACCCTGTATTTATGTTTCCTAGTGGGTTATAAATGTGGCGAAGGGCTTCCTCTTGGTATGGGTGTCGGTATTTTCCGATCCAACATTATTTTGGCCGGCGGCCTTGAAGCCGTGTACGACGGCTACACAAATTTCCCACCAAATCCAAGGAAAGATGTGTATCAGTTTGACAGTAAAAACAGTACCTACCCCATTCCCTTCCTCCAACAAGGGAAGTCTTGTCCTTTCCTGGCAGAGCATAATGGCAAATTGTATGTTCTCTCAACTTTCTCTTTAAAGTTTTCTGCTGGCCATCACTTTACTCCCTCTTTTGAAATGTTTGATCCAAAAGAGGGCAAATGGGCCAGTCTGCCTGAACCCCCACCTTTCACCCGCGACTACCTTAAACATGATCCTTTTACTGCTCATGCAGTTGTAGGCTCTAACATATTTGCCTCATCTATCTTTAGTCCCATATTCTGTTTTAACATGGATGATCCCAATCAAGAATGGAAAGTACACGAATTTAACATGGATGACCCTAGTCAAGATCAAGAATGGGACTGCCAAGGCTTTCCCATGGAATTTAATGGTCAAGCTTTAGCAGCGGAAACTAAGGATGGAGATTGGGTGATTTTTAAGCTGTACGCCACAAAGACCTTATTGAAGCTGGCGACGACATTGATGAAGACGACCACGATGAGTACGACCAGGACAACTTTGATTTGGAGGAGCATCATTATCATCGTGCTTGTCCTTCTCGTGATTATGAATGGTGGGGTGCGTCTATACGTGGGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

31.02

Weight (kDa)

5.67

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 75
Acc65I GGTACC 1 cut(s) 34
AccB1I GGYRCC 1 cut(s) 34
AccII CGCG 1 cut(s) 420
AciI CCGC 3 cut(s) 144, 418, 632
AclWI GGATC 4 cut(s) 117, 362, 431, 515
AcoI YGGCCR 2 cut(s) 138, 334
AcsI RAATTY 3 cut(s) 175, 548, 608
AfaI GTAC 6 cut(s) 36, 161, 229, 543, 671, 730
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 3 cut(s) 152, 359, 691
AjnI CCWGG 2 cut(s) 273, 734
AluBI AGCT 3 cut(s) 623, 667, 694
AluI AGCT 3 cut(s) 623, 667, 694
AlwI GGATC 4 cut(s) 117, 362, 431, 515
AoxI GGCC 4 cut(s) 138, 145, 334, 387
ApeKI GCWGC 1 cut(s) 629
ApoI RAATTY 3 cut(s) 175, 548, 608
Asp700I GAANNNNTTC 1 cut(s) 90
Asp718I GGTACC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 387
AsuHPI GGTGA 2 cut(s) 406, 667
BaeI ACNNNNGTAYC 1 cut(s) 805
BalI TGGCCA 1 cut(s) 336
BanI GGYRCC 1 cut(s) 34
BauI CACGAG 1 cut(s) 785
BbsI GAAGAC 1 cut(s) 719
BbvI GCAGC 1 cut(s) 641
BccI CCATC 3 cut(s) 2, 345, 638
BceAI ACGGC 2 cut(s) 140, 181
BciT130I CCWGG 2 cut(s) 275, 736
BfaI CTAG 2 cut(s) 65, 567
BisI GCNGC 2 cut(s) 145, 630
BlsI GCNGC 2 cut(s) 146, 631
Bme1390I CCNGG 2 cut(s) 275, 736
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 275, 736
BmsI GCATC 2 cut(s) 15, 768
BoxI GACNNNNGTC 1 cut(s) 567
BpiI GAAGAC 1 cut(s) 719
BsaAI YACGTR 1 cut(s) 817
BsaBI GATNNNNATC 2 cut(s) 204, 525
BsaJI CCNNGG 3 cut(s) 191, 592, 603
BsaXI ACNNNNNCTCC 2 cut(s) 639, 669
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 390
Bse8I GATNNNNATC 2 cut(s) 204, 525
BseBI CCWGG 2 cut(s) 275, 736
BseDI CCNNGG 3 cut(s) 191, 592, 603
BseGI GGATG 3 cut(s) 523, 565, 649
BseJI GATNNNNATC 2 cut(s) 204, 525
BseLI CCNNNNNNNGG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 769
BseXI GCAGC 1 cut(s) 641
Bsh1236I CGCG 1 cut(s) 420
BshFI GGCC 4 cut(s) 140, 147, 336, 389
BshNI GGYRCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 2 cut(s) 480, 599
BslI CCNNNNNNNGG 1 cut(s) 377
BsmFI GGGAC 2 cut(s) 480, 599
BsnI GGCC 4 cut(s) 140, 147, 336, 389
Bsp143I GATC 5 cut(s) 122, 367, 436, 520, 574
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 3 cut(s) 144, 418, 632
BspANI GGCC 4 cut(s) 140, 147, 336, 389
BspFNI CGCG 1 cut(s) 420
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 4 cut(s) 117, 362, 431, 515
BspT107I GGYRCC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 3 cut(s) 191, 592, 603
BssMI GATC 5 cut(s) 122, 367, 436, 520, 574
BssSI CACGAG 1 cut(s) 785
BssT1I CCWWGG 3 cut(s) 191, 592, 603
Bst2BI CACGAG 1 cut(s) 785
Bst2UI CCWGG 2 cut(s) 275, 736
Bst4CI ACNGT 2 cut(s) 218, 227
BstBAI YACGTR 1 cut(s) 817
BstC8I GCNNGC 3 cut(s) 142, 334, 696
BstDEI CTNAG 1 cut(s) 639
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 3 cut(s) 523, 565, 649
BstFNI CGCG 1 cut(s) 420
BstKTI GATC 5 cut(s) 125, 370, 439, 523, 577
BstMBI GATC 5 cut(s) 122, 367, 436, 520, 574
BstMWI GCNNNNNNNGC 1 cut(s) 629
BstNI CCWGG 2 cut(s) 275, 736
BstPAI GACNNNNGTC 1 cut(s) 567
BstSCI CCNGG 2 cut(s) 273, 734
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 641
BstV2I GAAGAC 1 cut(s) 719
BsuRI GGCC 4 cut(s) 140, 147, 336, 389
BtgI CCRYGG 1 cut(s) 603
BtsCI GGATG 3 cut(s) 523, 565, 649
Cac8I GCNNGC 3 cut(s) 142, 334, 696
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 387
CseI GACGC 1 cut(s) 797
Csp6I GTAC 6 cut(s) 35, 160, 228, 542, 670, 729
CviAII CATG 5 cut(s) 434, 452, 514, 556, 604
CviQI GTAC 6 cut(s) 35, 160, 228, 542, 670, 729
DdeI CTNAG 1 cut(s) 639
DpnI GATC 5 cut(s) 124, 369, 438, 522, 576
DpnII GATC 5 cut(s) 122, 367, 436, 520, 574
DraI TTTAAA 1 cut(s) 321
EaeI YGGCCR 2 cut(s) 138, 334
Eco130I CCWWGG 3 cut(s) 191, 592, 603
EcoRII CCWGG 2 cut(s) 273, 734
EcoT14I CCWWGG 3 cut(s) 191, 592, 603
ErhI CCWWGG 3 cut(s) 191, 592, 603
FaeI CATG 5 cut(s) 437, 455, 517, 559, 607
FaqI GGGAC 2 cut(s) 480, 599
FatI CATG 5 cut(s) 433, 451, 513, 555, 603
FauI CCCGC 1 cut(s) 425
Fnu4HI GCNGC 2 cut(s) 145, 630
FokI GGATG 3 cut(s) 530, 572, 656
Fsp4HI GCNGC 2 cut(s) 145, 630
FspBI CTAG 2 cut(s) 65, 567
GluI GCNGC 2 cut(s) 145, 630
HaeIII GGCC 4 cut(s) 140, 147, 336, 389
HapII CCGG 1 cut(s) 141
HgaI GACGC 1 cut(s) 797
Hin1II CATG 5 cut(s) 437, 455, 517, 559, 607
HindIII AAGCTT 1 cut(s) 621
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 406, 667
Hpy166II GTNNAC 2 cut(s) 160, 544
Hpy188I TCNGA 3 cut(s) 24, 122, 827
Hpy188III TCNNGA 4 cut(s) 530, 572, 578, 787
Hpy8I GTNNAC 2 cut(s) 160, 544
Hpy99I CGWCG 2 cut(s) 167, 703
HpyAV CCTTC 3 cut(s) 80, 253, 791
HpyCH4III ACNGT 2 cut(s) 218, 227
HpyCH4IV ACGT 1 cut(s) 816
HpyCH4V TGCA 2 cut(s) 28, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 629
HpyF3I CTNAG 1 cut(s) 639
HpySE526I ACGT 1 cut(s) 816
Hsp92II CATG 5 cut(s) 437, 455, 517, 559, 607
KpnI GGTACC 1 cut(s) 38
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 5 cut(s) 122, 367, 436, 520, 574
LmnI GCTCC 1 cut(s) 756
Lsp1109I GCAGC 1 cut(s) 641
LweI GCATC 2 cut(s) 15, 768
MaeI CTAG 2 cut(s) 65, 567
MaeII ACGT 1 cut(s) 816
MalI GATC 5 cut(s) 124, 369, 438, 522, 576
MboI GATC 5 cut(s) 122, 367, 436, 520, 574
MboII GAAGA 2 cut(s) 17, 724
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 4 cut(s) 175, 293, 548, 608
MluNI TGGCCA 1 cut(s) 336
MmeI TCCRAC 2 cut(s) 150, 274
MnlI CCTC 6 cut(s) 105, 257, 361, 370, 490, 747
Mox20I TGGCCA 1 cut(s) 336
MroNI GCCGGC 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 90
MscI TGGCCA 1 cut(s) 336
MseI TTAA 6 cut(s) 320, 429, 510, 552, 612, 663
Msp20I TGGCCA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 275, 736
MvaI CCWGG 2 cut(s) 275, 736
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 629
NaeI GCCGGC 1 cut(s) 142
NcoI CCATGG 1 cut(s) 603
NdeII GATC 5 cut(s) 122, 367, 436, 520, 574
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 5 cut(s) 437, 455, 517, 559, 607
NlaIV GGNNCC 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 728
PdiI GCCGGC 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 90
PkrI GCNGC 2 cut(s) 146, 631
Ppu21I YACGTR 1 cut(s) 817
PshAI GACNNNNGTC 1 cut(s) 567
PsiI TTATAA 1 cut(s) 75
Psp6I CCWGG 2 cut(s) 273, 734
PspGI CCWGG 2 cut(s) 273, 734
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 387
RsaI GTAC 6 cut(s) 36, 161, 229, 543, 671, 730
RsaNI GTAC 6 cut(s) 35, 160, 228, 542, 670, 729
SaqAI TTAA 6 cut(s) 320, 429, 510, 552, 612, 663
SatI GCNGC 2 cut(s) 145, 630
Sau3AI GATC 5 cut(s) 122, 367, 436, 520, 574
Sau96I GGNCC 1 cut(s) 387
ScrFI CCNGG 2 cut(s) 275, 736
SetI ASST 9 cut(s) 40, 233, 412, 429, 625, 669, 686, 696, 819
SfaNI GCATC 2 cut(s) 15, 768
Sse9I AATT 4 cut(s) 175, 293, 548, 608
SsiI CCGC 3 cut(s) 144, 418, 632
SspMI CTAG 2 cut(s) 65, 567
StyD4I CCNGG 2 cut(s) 273, 734
StyI CCWWGG 3 cut(s) 191, 592, 603
TaaI ACNGT 2 cut(s) 218, 227
TaiI ACGT 1 cut(s) 819
TasI AATT 4 cut(s) 175, 293, 548, 608
TatI WGTACW 1 cut(s) 541
TauI GCSGC 1 cut(s) 147
Tru1I TTAA 6 cut(s) 320, 429, 510, 552, 612, 663
Tru9I TTAA 6 cut(s) 320, 429, 510, 552, 612, 663
TseI GCWGC 1 cut(s) 629
TspDTI ATGAA 2 cut(s) 725, 809
XapI RAATTY 3 cut(s) 175, 548, 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 2 cut(s) 65, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.