Rmu_sc0005424.1_g000013

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005424.1
OG0000213
Physical Location & Seq
Reverse (-)
66259 .. 67653
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005424.1_g000013.1.cds

Sequence Viewer

Length: 1395 bp
atgaatcccattccgaaccgcagtgggattagtccagtccagtccagctgtcaaatgaggagttggtgtgtatgtaaagggagccgagaactagttcccatttcatatctcccatctctcagacgctcaaatccaaaggaaaggaaacagagtaagcaacaaaagcaaagaaacatgtcctcccaaaaacagcttgacctacccaccagcgacggcgaagaggagaggcagcaacacccgctccggaagaccaaagagaagttgaagtgggagttggagctggaggagggtgacaagtcattctacatgtgttgtctagagcacaggagcgactgggtggcttatgttgtccacaccatcaaactgtcggatttgttatcatattcggcggtgggggaccagccaccgcgattacggcaagtggcttataaggccgggtcgcatctccccggctctgtgggttgcggtgtttggggatcccaaattgttttcaccggcggcgtgacacccagctcccctttcggcttcaggacaataggtcctgactcagtttggcatacaaatgtttatgcctttgaaactcacacaaatgagatcacaaagcttgacgccaatttacaaggagggaaaatggagcctttgatggtggagctggagggcaaactgtacgctctttcctataagctggtcggccatcctccctcatttgaggtgtttgaccctaaaatgggcaagtgggaaggtttaccccaacctccattcttccaagttggctctccatattatgatcatggaaacttctcttatgcaatcgccggcacaaagatgtttgcctcccatgaaaaatgtccagtgttctgctttgacgtcgcccacccggatagagaatggagactagtccctactatgttccggggtggcccttttcccttcaataacaaggctttagtcctggacctgcaggaggacgacaagaagaaaataatgtttggctacagttatgagccttggcgtctaagggtatatcttatgtcattgtctgaaaacaaagaaattattacaaaaatcggtcatctgaggatgccagtgttacctgctgaattgggtttgccacaacgctgtgaatttttgcacataggaggtcagaaagcctgccttgttgtcaccgaattcgacttccgtggtgaagtcgacgctcctgcttataatgagcgcaatactcataagagacacggtgcggtcataccatttcaatttgaagttgatatcaccaaggtggacaaggacaagaaaaattgtttaacactccaattcatgcctcttcgcagcttcgaataccataccaacccatccagttttcctgaacctgaaacggttggctgctttctgctgtga

Protein Analysis

464

Amino Acids

52.95

Weight (kDa)

8.33

Isoelectric Point (pI)

57.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 429, 1206
AatII GACGTC 1 cut(s) 870
Acc36I ACCTGC 2 cut(s) 966, 1102
AccBSI CCGCTC 1 cut(s) 241
AccI GTMKAC 1 cut(s) 1191
AccII CGCG 1 cut(s) 409
AccIII TCCGGA 1 cut(s) 243
AciI CCGC 7 cut(s) 19, 239, 389, 407, 465, 498, 1238
AclWI GGATC 2 cut(s) 471, 484
AcoI YGGCCR 1 cut(s) 691
AcsI RAATTY 2 cut(s) 1124, 1169
AcuI CTGAAG 1 cut(s) 511
AcyI GRCGYC 3 cut(s) 609, 867, 1012
AfaI GTAC 1 cut(s) 668
AfiI CCNNNNNNNGG 3 cut(s) 727, 728, 964
AflIII ACRYGT 2 cut(s) 174, 306
AgsI TTSAA 5 cut(s) 265, 578, 934, 1253, 1259
AhdI GACNNNNNGTC 1 cut(s) 537
AhlI ACTAGT 2 cut(s) 91, 895
AjnI CCWGG 1 cut(s) 951
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AleI CACNNNNGTG 1 cut(s) 1274
AluBI AGCT 8 cut(s) 48, 193, 280, 513, 604, 652, 685, 1329
AluI AGCT 8 cut(s) 48, 193, 280, 513, 604, 652, 685, 1329
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 886, 1222
AlwI GGATC 2 cut(s) 471, 484
Aor13HI TCCGGA 1 cut(s) 243
AoxI GGCC 3 cut(s) 432, 691, 919
ApeKI GCWGC 3 cut(s) 229, 1326, 1380
ApoI RAATTY 2 cut(s) 1124, 1169
Asp700I GAANNNNTTC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 1215
AspS9I GGNCC 4 cut(s) 397, 539, 920, 955
AsuC2I CCSGG 4 cut(s) 436, 450, 878, 914
AsuHPI GGTGA 5 cut(s) 302, 484, 1156, 1196, 1261
AsuII TTCGAA 1 cut(s) 1332
AvaII GGWCC 3 cut(s) 397, 539, 955
BamHI GGATCC 1 cut(s) 476
BbsI GAAGAC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 3 cut(s) 241, 1338, 1367
BccI CCATC 5 cut(s) 121, 365, 637, 702, 1357
BceAI ACGGC 2 cut(s) 229, 431
BcgI CGANNNNNNTGC 2 cut(s) 1181, 1215
BciT130I CCWGG 1 cut(s) 953
BclI TGATCA 1 cut(s) 787
BcnI CCSGG 4 cut(s) 436, 450, 878, 914
BcoDI GTCTC 2 cut(s) 886, 1222
BcuI ACTAGT 2 cut(s) 91, 895
BfaI CTAG 3 cut(s) 92, 317, 896
BfmI CTRYAG 2 cut(s) 959, 994
BfuAI ACCTGC 2 cut(s) 966, 1102
BisI GCNGC 4 cut(s) 230, 499, 1327, 1381
BlsI GCNGC 4 cut(s) 231, 500, 1328, 1382
Bme1390I CCNGG 5 cut(s) 436, 450, 878, 914, 953
Bme18I GGWCC 3 cut(s) 397, 539, 955
BmeRI GACNNNNNGTC 1 cut(s) 537
BmgT120I GGNCC 4 cut(s) 397, 539, 920, 955
BmiI GGNNCC 4 cut(s) 83, 398, 478, 636
BmrFI CCNGG 5 cut(s) 436, 450, 878, 914, 953
BmrI ACTGGG 1 cut(s) 343
BmsI GCATC 2 cut(s) 451, 1071
BmuI ACTGGG 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 254
BpmI CTGGAG 2 cut(s) 302, 674
Bpu14I TTCGAA 1 cut(s) 1332
BpuMI CCSGG 4 cut(s) 436, 450, 878, 914
BsaHI GRCGYC 3 cut(s) 609, 867, 1012
BsaJI CCNNGG 5 cut(s) 448, 913, 1007, 1180, 1272
BsaWI WCCGGW 1 cut(s) 243
BsaXI ACNNNNNCTCC 6 cut(s) 52, 82, 164, 194, 225, 255
Bsc4I CCNNNNNNNGG 3 cut(s) 727, 728, 964
Bse118I RCCGGY 2 cut(s) 494, 815
Bse1I ACTGG 6 cut(s) 35, 40, 338, 851, 1085, 1353
BseAI TCCGGA 1 cut(s) 243
BseBI CCWGG 1 cut(s) 953
BseDI CCNNGG 5 cut(s) 448, 913, 1007, 1180, 1272
BseGI GGATG 3 cut(s) 694, 1086, 1349
BseLI CCNNNNNNNGG 3 cut(s) 727, 728, 964
BseMII CTCAG 3 cut(s) 133, 561, 1067
BseNI ACTGG 6 cut(s) 35, 40, 338, 851, 1085, 1353
BseRI GAGGAG 3 cut(s) 73, 236, 299
BseXI GCAGC 3 cut(s) 241, 1338, 1367
BseYI CCCAGC 1 cut(s) 509
Bsh1236I CGCG 1 cut(s) 409
BshFI GGCC 3 cut(s) 434, 693, 921
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 7 cut(s) 244, 435, 450, 495, 816, 878, 913
BslFI GGGAC 2 cut(s) 410, 884
BslI CCNNNNNNNGG 3 cut(s) 727, 728, 964
BsmAI GTCTC 2 cut(s) 886, 1222
BsmFI GGGAC 2 cut(s) 410, 884
BsnI GGCC 3 cut(s) 434, 693, 921
Bsp119I TTCGAA 1 cut(s) 1332
Bsp1286I GDGCHC 1 cut(s) 324
Bsp13I TCCGGA 1 cut(s) 243
Bsp143I GATC 3 cut(s) 476, 594, 787
BspACI CCGC 7 cut(s) 19, 239, 389, 407, 465, 498, 1238
BspANI GGCC 3 cut(s) 434, 693, 921
BspCNI CTCAG 3 cut(s) 132, 560, 1068
BspEI TCCGGA 1 cut(s) 243
BspFNI CGCG 1 cut(s) 409
BspLI GGNNCC 4 cut(s) 83, 398, 478, 636
BspMAI CTGCAG 1 cut(s) 963
BspMI ACCTGC 2 cut(s) 966, 1102
BspPI GGATC 2 cut(s) 471, 484
BspT104I TTCGAA 1 cut(s) 1332
BsrBI CCGCTC 1 cut(s) 241
BsrFI RCCGGY 2 cut(s) 494, 815
BsrI ACTGG 6 cut(s) 35, 40, 338, 851, 1085, 1353
BssAI RCCGGY 2 cut(s) 494, 815
BssECI CCNNGG 5 cut(s) 448, 913, 1007, 1180, 1272
BssMI GATC 3 cut(s) 476, 594, 787
BssNI GRCGYC 3 cut(s) 609, 867, 1012
BssT1I CCWWGG 2 cut(s) 1007, 1272
Bst2UI CCWGG 1 cut(s) 953
Bst4CI ACNGT 5 cut(s) 366, 666, 998, 1235, 1375
Bst6I CTCTTC 2 cut(s) 213, 1326
BstACI GRCGYC 3 cut(s) 609, 867, 1012
BstBI TTCGAA 1 cut(s) 1332
BstC8I GCNNGC 2 cut(s) 817, 1153
BstDEI CTNAG 4 cut(s) 119, 547, 1016, 1076
BstDSI CCRYGG 1 cut(s) 1180
BstENI CCTNNNNNAGG 1 cut(s) 962
BstF5I GGATG 3 cut(s) 694, 1086, 1349
BstFNI CGCG 1 cut(s) 409
BstHHI GCGC 1 cut(s) 1215
BstKTI GATC 3 cut(s) 479, 597, 790
BstMAI GTCTC 2 cut(s) 886, 1222
BstMBI GATC 3 cut(s) 476, 594, 787
BstMWI GCNNNNNNNGC 4 cut(s) 163, 238, 415, 431
BstNI CCWGG 1 cut(s) 953
BstNSI RCATGY 2 cut(s) 178, 310
BstSCI CCNGG 5 cut(s) 434, 448, 876, 912, 951
BstSFI CTRYAG 2 cut(s) 959, 994
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 3 cut(s) 241, 1338, 1367
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 3 cut(s) 434, 693, 921
BtgI CCRYGG 1 cut(s) 1180
BtsCI GGATG 3 cut(s) 694, 1086, 1349
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 3 cut(s) 28, 858, 1092
BveI ACCTGC 2 cut(s) 966, 1102
Cac8I GCNNGC 2 cut(s) 817, 1153
CfoI GCGC 1 cut(s) 1215
Cfr10I RCCGGY 2 cut(s) 494, 815
Cfr13I GGNCC 4 cut(s) 397, 539, 920, 955
CseI GACGC 4 cut(s) 132, 617, 1001, 1202
Csp6I GTAC 1 cut(s) 667
CviAII CATG 5 cut(s) 175, 307, 791, 839, 1315
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 4 cut(s) 119, 547, 1016, 1076
DpnI GATC 3 cut(s) 478, 596, 789
DpnII GATC 3 cut(s) 476, 594, 787
DriI GACNNNNNGTC 1 cut(s) 537
EaeI YGGCCR 1 cut(s) 691
Eam1104I CTCTTC 2 cut(s) 213, 1326
Eam1105I GACNNNNNGTC 1 cut(s) 537
EarI CTCTTC 2 cut(s) 213, 1326
Eco130I CCWWGG 2 cut(s) 1007, 1272
Eco32I GATATC 1 cut(s) 1267
Eco47I GGWCC 3 cut(s) 397, 539, 955
Eco57I CTGAAG 1 cut(s) 511
EcoNI CCTNNNNNAGG 1 cut(s) 962
EcoO109I RGGNCCY 1 cut(s) 539
EcoRI GAATTC 1 cut(s) 1169
EcoRII CCWGG 1 cut(s) 951
EcoRV GATATC 1 cut(s) 1267
EcoT14I CCWWGG 2 cut(s) 1007, 1272
ErhI CCWWGG 2 cut(s) 1007, 1272
FaeI CATG 5 cut(s) 178, 310, 794, 842, 1318
FalI AAGNNNNNCTT 2 cut(s) 1140, 1172
FaqI GGGAC 2 cut(s) 410, 884
FatI CATG 5 cut(s) 174, 306, 790, 838, 1314
FauI CCCGC 1 cut(s) 246
FbaI TGATCA 1 cut(s) 787
FblI GTMKAC 1 cut(s) 1191
Fnu4HI GCNGC 4 cut(s) 230, 499, 1327, 1381
FokI GGATG 3 cut(s) 681, 1093, 1336
Fsp4HI GCNGC 4 cut(s) 230, 499, 1327, 1381
FspBI CTAG 3 cut(s) 92, 317, 896
GlaI GCGC 1 cut(s) 1214
GluI GCNGC 4 cut(s) 230, 499, 1327, 1381
GsaI CCCAGC 1 cut(s) 513
GsuI CTGGAG 2 cut(s) 302, 674
HaeIII GGCC 3 cut(s) 434, 693, 921
HapII CCGG 7 cut(s) 244, 435, 450, 495, 816, 878, 913
HgaI GACGC 4 cut(s) 132, 617, 1001, 1202
HhaI GCGC 1 cut(s) 1215
Hin1I GRCGYC 3 cut(s) 609, 867, 1012
Hin1II CATG 5 cut(s) 178, 310, 794, 842, 1318
Hin6I GCGC 1 cut(s) 1213
HinP1I GCGC 1 cut(s) 1213
HincII GTYRAC 1 cut(s) 1192
HindII GTYRAC 1 cut(s) 1192
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 2 cut(s) 4, 545
HpaII CCGG 7 cut(s) 244, 435, 450, 495, 816, 878, 913
HphI GGTGA 5 cut(s) 302, 484, 1156, 1196, 1261
Hpy166II GTNNAC 4 cut(s) 352, 746, 1192, 1279
Hpy188I TCNGA 6 cut(s) 15, 122, 370, 1042, 1077, 1146
Hpy188III TCNNGA 5 cut(s) 244, 317, 529, 542, 1361
Hpy8I GTNNAC 4 cut(s) 352, 746, 1192, 1279
Hpy99I CGWCG 3 cut(s) 215, 872, 1196
HpyAV CCTTC 2 cut(s) 734, 940
HpyCH4III ACNGT 5 cut(s) 366, 666, 998, 1235, 1375
HpyCH4IV ACGT 1 cut(s) 867
HpyCH4V TGCA 3 cut(s) 809, 961, 1132
HpyF10VI GCNNNNNNNGC 4 cut(s) 163, 238, 415, 431
HpyF3I CTNAG 4 cut(s) 119, 547, 1016, 1076
HpySE526I ACGT 1 cut(s) 867
Hsp92I GRCGYC 3 cut(s) 609, 867, 1012
Hsp92II CATG 5 cut(s) 178, 310, 794, 842, 1318
HspAI GCGC 1 cut(s) 1213
Kpn2I TCCGGA 1 cut(s) 243
KroI GCCGGC 1 cut(s) 815
KroNI GCCGGC 1 cut(s) 817
Ksp22I TGATCA 1 cut(s) 787
Kzo9I GATC 3 cut(s) 476, 594, 787
LmnI GCTCC 8 cut(s) 81, 246, 277, 327, 518, 634, 649, 1201
Lsp1109I GCAGC 3 cut(s) 241, 1338, 1367
LweI GCATC 2 cut(s) 451, 1071
MaeI CTAG 3 cut(s) 92, 317, 896
MaeII ACGT 1 cut(s) 867
MaeIII GTNAC 4 cut(s) 290, 502, 1089, 1162
MalI GATC 3 cut(s) 478, 596, 789
MbiI CCGCTC 1 cut(s) 241
MboI GATC 3 cut(s) 476, 594, 787
MboII GAAGA 5 cut(s) 230, 259, 754, 988, 1313
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 9 cut(s) 483, 613, 1053, 1100, 1124, 1169, 1253, 1294, 1310
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 2 cut(s) 255, 348
MroI TCCGGA 1 cut(s) 243
MroNI GCCGGC 1 cut(s) 815
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 1 cut(s) 1301
MslI CAYNNNNRTG 4 cut(s) 561, 588, 824, 1274
MspA1I CMGCKG 1 cut(s) 48
MspI CCGG 7 cut(s) 244, 435, 450, 495, 816, 878, 913
MspR9I CCNGG 5 cut(s) 436, 450, 878, 914, 953
MvaI CCWGG 1 cut(s) 953
MvnI CGCG 1 cut(s) 409
MwoI GCNNNNNNNGC 4 cut(s) 163, 238, 415, 431
NaeI GCCGGC 1 cut(s) 817
NciI CCSGG 4 cut(s) 436, 450, 878, 914
NdeII GATC 3 cut(s) 476, 594, 787
NgoMIV GCCGGC 1 cut(s) 815
NlaIII CATG 5 cut(s) 178, 310, 794, 842, 1318
NlaIV GGNNCC 4 cut(s) 83, 398, 478, 636
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 3 cut(s) 290, 502, 1162
NspI RCATGY 2 cut(s) 178, 310
NspV TTCGAA 1 cut(s) 1332
OliI CACNNNNGTG 1 cut(s) 1274
PciI ACATGT 2 cut(s) 174, 306
PdiI GCCGGC 1 cut(s) 817
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 4
PfoI TCCNGGA 1 cut(s) 951
PkrI GCNGC 4 cut(s) 231, 500, 1328, 1382
PleI GAGTC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 539
PpuMI RGGWCCY 1 cut(s) 539
PscI ACATGT 2 cut(s) 174, 306
PsiI TTATAA 2 cut(s) 429, 1206
Psp5II RGGWCCY 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 951
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 1 cut(s) 951
PspN4I GGNNCC 4 cut(s) 83, 398, 478, 636
PspPI GGNCC 4 cut(s) 397, 539, 920, 955
PspPPI RGGWCCY 1 cut(s) 539
PstI CTGCAG 1 cut(s) 963
PsuI RGATCY 1 cut(s) 476
PvuII CAGCTG 1 cut(s) 48
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
RseI CAYNNNNRTG 4 cut(s) 561, 588, 824, 1274
SalI GTCGAC 1 cut(s) 1190
SaqAI TTAA 1 cut(s) 1301
SatI GCNGC 4 cut(s) 230, 499, 1327, 1381
Sau3AI GATC 3 cut(s) 476, 594, 787
Sau96I GGNCC 4 cut(s) 397, 539, 920, 955
SbfI CCTGCAGG 1 cut(s) 963
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 5 cut(s) 436, 450, 878, 914, 953
SdaI CCTGCAGG 1 cut(s) 963
SduI GDGCHC 1 cut(s) 324
SfaNI GCATC 2 cut(s) 451, 1071
SfcI CTRYAG 2 cut(s) 959, 994
SfuI TTCGAA 1 cut(s) 1332
SgrAI CRCCGGYG 1 cut(s) 494
SinI GGWCC 3 cut(s) 397, 539, 955
SmiMI CAYNNNNRTG 4 cut(s) 561, 588, 824, 1274
SpeI ACTAGT 2 cut(s) 91, 895
Sse8387I CCTGCAGG 1 cut(s) 963
Sse9I AATT 9 cut(s) 483, 613, 1053, 1100, 1124, 1169, 1253, 1294, 1310
SsiI CCGC 7 cut(s) 19, 239, 389, 407, 465, 498, 1238
SspMI CTAG 3 cut(s) 92, 317, 896
StyD4I CCNGG 5 cut(s) 434, 448, 876, 912, 951
StyI CCWWGG 2 cut(s) 1007, 1272
TaaI ACNGT 5 cut(s) 366, 666, 998, 1235, 1375
TaiI ACGT 1 cut(s) 870
TaqI TCGA 3 cut(s) 1173, 1191, 1332
TaqII GACCGA 1 cut(s) 1058
TasI AATT 9 cut(s) 483, 613, 1053, 1100, 1124, 1169, 1253, 1294, 1310
TauI GCSGC 1 cut(s) 501
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 1301
Tru9I TTAA 1 cut(s) 1301
TscAI CASTG 3 cut(s) 28, 858, 1092
TseFI GTSAC 3 cut(s) 290, 502, 1162
TseI GCWGC 3 cut(s) 229, 1326, 1380
Tsp45I GTSAC 3 cut(s) 290, 502, 1162
TspDTI ATGAA 4 cut(s) 17, 93, 855, 1303
TspGWI ACGGA 1 cut(s) 1169
TspRI CASTG 3 cut(s) 28, 858, 1092
VpaK11BI GGWCC 3 cut(s) 397, 539, 955
XagI CCTNNNNNAGG 1 cut(s) 962
XapI RAATTY 2 cut(s) 1124, 1169
XbaI TCTAGA 1 cut(s) 316
XceI RCATGY 2 cut(s) 178, 310
XmiI GTMKAC 1 cut(s) 1191
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 3 cut(s) 92, 317, 896
ZraI GACGTC 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.