Rroxscaffold_4G00301200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000213
Physical Location & Seq
Reverse (-)
21618275 .. 21624444
6170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301200.1

Sequence Viewer

Length: 591 bp
ATGAAATGGAAACAGAGAAGAGACAGAGTTGAGGAAGACAAGAGGTCAGTTGGGTCGAATCAAAATATGAAATGGAAAGGAAGAGATATTTACTTGAAAGTGAAAAAAAGCAGTGAAAATGTGAAGAAGAATCAAAGCATTCTTGTTTGGTGCGGTAGGAGCTTGAAGGTGGAGGAGTTTTATCGTAAGTCCTTCTACTTTTGTAGCTTTGAAGGTTACCGGTCCATTCATAAGCCCGAGGAGCAATGGGATGCTTTTGTTGTCCACGCCATCAATCTCGGCGGTTTCTTCTCATCGTCATCATCCAAAATGAAATTAGAATTACGACAAGTAGCATATAGGGGCGGAAATGACCTCCCCTTTTTTGGGGGTTGTGGGTGTGTTGGGCTCCTAGATTGTTTTCGTCGCGGCCTAACACAAAATCATTTTGGGCACTCTTTGAGTGGATGTTGCTCTAGTCGAGAAGCTTATGCATTTGATACCAAGCATCCCGAGAAGGGGATCGTGAAAATGAATGAGACTATAAACCTAGGGAAATACCGACCGTTGACGGTGCGAGTGGCGCCGCAAACTCTACTCCCCGTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.6

Weight (kDa)

9.66

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 562
AccII CGCG 1 cut(s) 408
AciI CCGC 5 cut(s) 153, 282, 345, 408, 566
AclWI GGATC 1 cut(s) 509
AcyI GRCGYC 1 cut(s) 563
AfiI CCNNNNNNNGG 4 cut(s) 365, 366, 497, 498
AgeI ACCGGT 1 cut(s) 219
AgsI TTSAA 3 cut(s) 97, 166, 212
AhdI GACNNNNNGTC 1 cut(s) 43
AluBI AGCT 3 cut(s) 162, 207, 467
AluI AGCT 3 cut(s) 162, 207, 467
Alw26I GTCTC 2 cut(s) 15, 512
AlwI GGATC 1 cut(s) 509
Ama87I CYCGRG 2 cut(s) 236, 491
AoxI GGCC 1 cut(s) 409
AsiGI ACCGGT 1 cut(s) 219
AspA2I CCTAGG 1 cut(s) 529
AspLEI GCGC 1 cut(s) 565
AspS9I GGNCC 1 cut(s) 222
AvaI CYCGRG 2 cut(s) 236, 491
AvaII GGWCC 1 cut(s) 222
AvrII CCTAGG 1 cut(s) 529
BaeGI GKGCMC 1 cut(s) 435
BanI GGYRCC 1 cut(s) 562
BanII GRGCYC 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 42
BccI CCATC 1 cut(s) 278
BcoDI GTCTC 2 cut(s) 15, 512
BfaI CTAG 3 cut(s) 392, 456, 530
BfoI RGCGCY 1 cut(s) 566
BisI GCNGC 2 cut(s) 409, 566
BlnI CCTAGG 1 cut(s) 529
BlsI GCNGC 2 cut(s) 410, 567
Bme18I GGWCC 1 cut(s) 222
BmeRI GACNNNNNGTC 1 cut(s) 43
BmeT110I CYCGRG 2 cut(s) 236, 491
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 389, 564
BmsI GCATC 2 cut(s) 241, 496
BpiI GAAGAC 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 563
BsaJI CCNNGG 2 cut(s) 237, 529
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 4 cut(s) 365, 366, 497, 498
Bse118I RCCGGY 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 237, 529
BseGI GGATG 4 cut(s) 256, 302, 452, 487
BseLI CCNNNNNNNGG 4 cut(s) 365, 366, 497, 498
BseMI GCAATG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 188, 254
BseSI GKGCMC 1 cut(s) 435
Bsh1236I CGCG 1 cut(s) 408
Bsh1285I CGRYCG 1 cut(s) 545
BshFI GGCC 1 cut(s) 411
BshNI GGYRCC 1 cut(s) 562
BshTI ACCGGT 1 cut(s) 219
BsiEI CGRYCG 1 cut(s) 545
BsiHKCI CYCGRG 2 cut(s) 236, 491
BsiSI CCGG 1 cut(s) 220
BslI CCNNNNNNNGG 4 cut(s) 365, 366, 497, 498
BsmAI GTCTC 2 cut(s) 15, 512
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 1 cut(s) 411
BsoBI CYCGRG 2 cut(s) 236, 491
Bsp1286I GDGCHC 2 cut(s) 390, 435
Bsp143I GATC 1 cut(s) 501
BspACI CCGC 5 cut(s) 153, 282, 345, 408, 566
BspANI GGCC 1 cut(s) 411
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 389, 564
BspPI GGATC 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 562
BsrDI GCAATG 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 237, 529
BssMI GATC 1 cut(s) 501
BssNI GRCGYC 1 cut(s) 563
BssT1I CCWWGG 1 cut(s) 529
Bst4CI ACNGT 2 cut(s) 546, 553
Bst6I CTCTTC 2 cut(s) 13, 76
BstACI GRCGYC 1 cut(s) 563
BstEII GGTNACC 1 cut(s) 215
BstF5I GGATG 4 cut(s) 256, 302, 452, 487
BstFNI CGCG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 566
BstHHI GCGC 1 cut(s) 565
BstKTI GATC 1 cut(s) 504
BstMAI GTCTC 2 cut(s) 15, 512
BstMBI GATC 1 cut(s) 501
BstMCI CGRYCG 1 cut(s) 545
BstMWI GCNNNNNNNGC 3 cut(s) 159, 241, 562
BstPI GGTNACC 1 cut(s) 215
BstSLI GKGCMC 1 cut(s) 435
BstUI CGCG 1 cut(s) 408
BstV2I GAAGAC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 411
BtsCI GGATG 4 cut(s) 256, 302, 452, 487
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
CfoI GCGC 1 cut(s) 565
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 222
CspAI ACCGGT 1 cut(s) 219
CviJI RGCY 6 cut(s) 162, 207, 235, 388, 411, 467
CviKI_1 RGCY 6 cut(s) 162, 207, 235, 388, 411, 467
DinI GGCGCC 1 cut(s) 564
DpnI GATC 1 cut(s) 503
DpnII GATC 1 cut(s) 501
DriI GACNNNNNGTC 1 cut(s) 43
Eam1104I CTCTTC 2 cut(s) 13, 76
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 2 cut(s) 13, 76
EciI GGCGGA 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 529
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 222
Eco88I CYCGRG 2 cut(s) 236, 491
Eco91I GGTNACC 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 529
EcoT22I ATGCAT 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 390
EgeI GGCGCC 1 cut(s) 564
EheI GGCGCC 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 529
FaiI YATR 6 cut(s) 68, 231, 337, 339, 471, 524
Fnu4HI GCNGC 2 cut(s) 409, 566
FokI GGATG 4 cut(s) 263, 289, 459, 474
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 2 cut(s) 409, 566
FspBI CTAG 3 cut(s) 392, 456, 530
GlaI GCGC 1 cut(s) 564
GluI GCNGC 2 cut(s) 409, 566
HaeII RGCGCY 1 cut(s) 566
HaeIII GGCC 1 cut(s) 411
HapII CCGG 1 cut(s) 220
HhaI GCGC 1 cut(s) 565
Hin1I GRCGYC 1 cut(s) 563
Hin6I GCGC 1 cut(s) 563
HinP1I GCGC 1 cut(s) 563
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 2 cut(s) 58, 130
HpaII CCGG 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 265, 549
Hpy188III TCNNGA 3 cut(s) 461, 491, 505
Hpy8I GTNNAC 2 cut(s) 265, 549
Hpy99I CGWCG 1 cut(s) 408
HpyAV CCTTC 4 cut(s) 160, 202, 206, 490
HpyCH4III ACNGT 2 cut(s) 546, 553
HpyCH4V TGCA 2 cut(s) 473, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 241, 562
Hsp92I GRCGYC 1 cut(s) 563
HspAI GCGC 1 cut(s) 563
KasI GGCGCC 1 cut(s) 562
Kzo9I GATC 1 cut(s) 501
LmnI GCTCC 3 cut(s) 159, 241, 393
LpnPI CCDG 1 cut(s) 233
LweI GCATC 2 cut(s) 241, 496
MaeI CTAG 3 cut(s) 392, 456, 530
MaeIII GTNAC 1 cut(s) 215
MalI GATC 1 cut(s) 503
MboI GATC 1 cut(s) 501
MboII GAAGA 6 cut(s) 30, 47, 93, 136, 139, 280
MhlI GDGCHC 2 cut(s) 390, 435
MluCI AATT 2 cut(s) 314, 320
Mly113I GGCGCC 1 cut(s) 563
MnlI CCTC 5 cut(s) 25, 36, 166, 232, 365
Mph1103I ATGCAT 1 cut(s) 475
MspI CCGG 1 cut(s) 220
Mva1269I GAATGC 1 cut(s) 138
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 3 cut(s) 159, 241, 562
NarI GGCGCC 1 cut(s) 563
NdeII GATC 1 cut(s) 501
NlaIV GGNNCC 2 cut(s) 389, 564
NmeAIII GCCGAG 1 cut(s) 258
NsiI ATGCAT 1 cut(s) 475
PctI GAATGC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 58, 130
PinAI ACCGGT 1 cut(s) 219
PkrI GCNGC 2 cut(s) 410, 567
PluTI GGCGCC 1 cut(s) 566
PspEI GGTNACC 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 389, 564
PspPI GGNCC 1 cut(s) 222
SatI GCNGC 2 cut(s) 409, 566
Sau3AI GATC 1 cut(s) 501
Sau96I GGNCC 1 cut(s) 222
SduI GDGCHC 2 cut(s) 390, 435
SetI ASST 8 cut(s) 47, 164, 171, 209, 217, 357, 469, 531
SfaNI GCATC 2 cut(s) 241, 496
SfoI GGCGCC 1 cut(s) 564
SinI GGWCC 1 cut(s) 222
Sse9I AATT 2 cut(s) 314, 320
SsiI CCGC 5 cut(s) 153, 282, 345, 408, 566
SspDI GGCGCC 1 cut(s) 562
SspMI CTAG 3 cut(s) 392, 456, 530
StyI CCWWGG 1 cut(s) 529
TaaI ACNGT 2 cut(s) 546, 553
TaqI TCGA 2 cut(s) 56, 460
TasI AATT 2 cut(s) 314, 320
TauI GCSGC 2 cut(s) 411, 568
TfiI GAWTC 2 cut(s) 58, 130
TscAI CASTG 1 cut(s) 118
TspDTI ATGAA 5 cut(s) 17, 83, 218, 326, 527
TspRI CASTG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 222
XmaJI CCTAGG 1 cut(s) 529
XspI CTAG 3 cut(s) 392, 456, 530
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.