RchiOBHm_Chr2g0090221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000213
Physical Location & Seq
Reverse (-)
4129761 .. 4131543
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46547

Sequence Viewer

Length: 579 bp
ATGCAGGAGTCACAAGAGCAGGCAATCCAGGAACATGCTGATAATCATGTATTCTGTTTTGATGTTGCGCAGCCACACATAGGATGGAGAAAATTATCCAGCTGTTTTGTGACAAAAAATGGGACAATCATTGCTCGCACTCCCTTTCATGGCAGAGCTTTAACACTGGACCTAGATAACTTGAAGTTGGTGTTCACATATGCATTTGATGAAAATGCAATACAGCTCTTTCTTATGTTTTACTTTGAAGAGAAAGTAGTGGAACTCGGCAAATTGTCTATCGAACACTTGCCTCCTGAGTTTACAGAACCTACTGAGTACAGTTTCATTCATCTCCGGGATCACACCGTCTGTCTCATCTTGAGCAGGTTCACCCGAAGCCGGGGCAGAGAGAACGACCATTACACAGTATATGAGCCGGGGACCCAGAAGATTGTTCTAGTGCCATTTACATTTACCTGCCTGGATGACTGGTGGTGGATATTTTCGTTTCAGTTCATGTCAACTAAAGTTTTGGAGTACCAGACCAAGGAAGATTGTGACAAACACCCTGAGGTTTTAGGGTGTTTCGTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

22.64

Weight (kDa)

5.3

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 69
Acc36I ACCTGC 2 cut(s) 357, 467
AclWI GGATC 1 cut(s) 348
AfaI GTAC 2 cut(s) 320, 521
AfiI CCNNNNNNNGG 5 cut(s) 80, 149, 381, 382, 529
AgsI TTSAA 2 cut(s) 184, 248
AjnI CCWGG 2 cut(s) 27, 462
AluBI AGCT 3 cut(s) 102, 158, 226
AluI AGCT 3 cut(s) 102, 158, 226
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 169, 423
AsuC2I CCSGG 3 cut(s) 338, 383, 420
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 2 cut(s) 169, 423
AxyI CCTNAGG 1 cut(s) 552
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 78
BciT130I CCWGG 2 cut(s) 29, 464
BcnI CCSGG 3 cut(s) 338, 383, 420
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 3 cut(s) 173, 440, 577
BfuAI ACCTGC 2 cut(s) 357, 467
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 5 cut(s) 29, 338, 383, 420, 464
Bme18I GGWCC 2 cut(s) 169, 423
BmgT120I GGNCC 2 cut(s) 169, 423
BmiI GGNNCC 2 cut(s) 424, 425
BmrFI CCNGG 5 cut(s) 29, 338, 383, 420, 464
BpuEI CTTGAG 1 cut(s) 382
BpuMI CCSGG 3 cut(s) 338, 383, 420
BsaJI CCNNGG 3 cut(s) 382, 419, 528
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 149, 381, 382, 529
Bse1I ACTGG 2 cut(s) 171, 476
Bse21I CCTNAGG 1 cut(s) 552
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 2 cut(s) 29, 464
BseDI CCNNGG 3 cut(s) 382, 419, 528
BseGI GGATG 2 cut(s) 89, 472
BseLI CCNNNNNNNGG 5 cut(s) 80, 149, 381, 382, 529
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 3 cut(s) 288, 306, 543
BseNI ACTGG 2 cut(s) 171, 476
BseXI GCAGC 1 cut(s) 82
BsiSI CCGG 3 cut(s) 337, 382, 419
BslFI GGGAC 2 cut(s) 136, 436
BslI CCNNNNNNNGG 5 cut(s) 80, 149, 381, 382, 529
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 2 cut(s) 136, 436
Bsp143I GATC 1 cut(s) 340
BspCNI CTCAG 3 cut(s) 289, 307, 544
BspLI GGNNCC 2 cut(s) 424, 425
BspMI ACCTGC 2 cut(s) 357, 467
BspPI GGATC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 2 cut(s) 171, 476
BssECI CCNNGG 3 cut(s) 382, 419, 528
BssMI GATC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 528
Bst2UI CCWGG 2 cut(s) 29, 464
Bst4CI ACNGT 3 cut(s) 323, 349, 409
Bst6I CTCTTC 1 cut(s) 243
BstC8I GCNNGC 2 cut(s) 21, 136
BstDEI CTNAG 3 cut(s) 297, 315, 552
BstF5I GGATG 2 cut(s) 89, 472
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 1 cut(s) 340
BstNI CCWGG 2 cut(s) 29, 464
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 5 cut(s) 27, 336, 381, 418, 462
BstV1I GCAGC 1 cut(s) 82
Bsu36I CCTNAGG 1 cut(s) 552
BtsCI GGATG 2 cut(s) 89, 472
BtsIMutI CAGTG 1 cut(s) 164
BveI ACCTGC 2 cut(s) 357, 467
Cac8I GCNNGC 2 cut(s) 21, 136
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 169, 423
Csp6I GTAC 2 cut(s) 319, 520
CviAII CATG 4 cut(s) 35, 47, 149, 499
CviJI RGCY 6 cut(s) 73, 102, 158, 226, 381, 418
CviKI_1 RGCY 6 cut(s) 73, 102, 158, 226, 381, 418
CviQI GTAC 2 cut(s) 319, 520
DdeI CTNAG 3 cut(s) 297, 315, 552
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 528
Eco47I GGWCC 2 cut(s) 169, 423
Eco81I CCTNAGG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 423
EcoRII CCWGG 2 cut(s) 27, 462
EcoT14I CCWWGG 1 cut(s) 528
EcoT22I ATGCAT 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 4 cut(s) 38, 50, 152, 502
FaqI GGGAC 2 cut(s) 136, 436
FatI CATG 4 cut(s) 34, 46, 148, 498
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 2 cut(s) 96, 479
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 3 cut(s) 173, 440, 577
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 71
HapII CCGG 3 cut(s) 337, 382, 419
HhaI GCGC 1 cut(s) 70
Hin1II CATG 4 cut(s) 38, 50, 152, 502
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 1 cut(s) 8
HpaII CCGG 3 cut(s) 337, 382, 419
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 4 cut(s) 195, 303, 372, 504
Hpy188III TCNNGA 2 cut(s) 296, 361
Hpy8I GTNNAC 4 cut(s) 195, 303, 372, 504
HpyCH4III ACNGT 3 cut(s) 323, 349, 409
HpyCH4V TGCA 3 cut(s) 4, 203, 218
HpyF3I CTNAG 3 cut(s) 297, 315, 552
Hsp92II CATG 4 cut(s) 38, 50, 152, 502
HspAI GCGC 1 cut(s) 68
KflI GGGWCCC 1 cut(s) 423
Kzo9I GATC 1 cut(s) 340
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 3 cut(s) 173, 440, 577
MaeIII GTNAC 3 cut(s) 9, 109, 539
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 3 cut(s) 260, 442, 545
MluCI AATT 2 cut(s) 92, 272
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 2 cut(s) 303, 547
Mph1103I ATGCAT 1 cut(s) 205
MseI TTAA 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 3 cut(s) 337, 382, 419
MspR9I CCNGG 5 cut(s) 29, 338, 383, 420, 464
MvaI CCWGG 2 cut(s) 29, 464
NciI CCSGG 3 cut(s) 338, 383, 420
NdeI CATATG 1 cut(s) 199
NdeII GATC 1 cut(s) 340
NlaIII CATG 4 cut(s) 38, 50, 152, 502
NlaIV GGNNCC 2 cut(s) 424, 425
NmeAIII GCCGAG 1 cut(s) 246
NmuCI GTSAC 3 cut(s) 9, 109, 539
NsbI TGCGCA 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 205
NspI RCATGY 1 cut(s) 38
PfoI TCCNGGA 2 cut(s) 27, 336
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 27, 462
PspGI CCWGG 2 cut(s) 27, 462
PspN4I GGNNCC 2 cut(s) 424, 425
PspPI GGNCC 2 cut(s) 169, 423
PspPPI RGGWCCY 1 cut(s) 423
PsrI GAACNNNNNNTAC 2 cut(s) 386, 418
PvuII CAGCTG 1 cut(s) 102
RsaI GTAC 2 cut(s) 320, 521
RsaNI GTAC 2 cut(s) 319, 520
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 340
Sau96I GGNCC 2 cut(s) 169, 423
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 5 cut(s) 29, 338, 383, 420, 464
SetI ASST 8 cut(s) 104, 160, 174, 228, 313, 371, 461, 558
SinI GGWCC 2 cut(s) 169, 423
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 2 cut(s) 92, 272
SspMI CTAG 3 cut(s) 173, 440, 577
StyD4I CCNGG 5 cut(s) 27, 336, 381, 418, 462
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 3 cut(s) 323, 349, 409
TaqI TCGA 1 cut(s) 282
TasI AATT 2 cut(s) 92, 272
TatI WGTACW 1 cut(s) 318
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 3 cut(s) 9, 109, 539
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 3 cut(s) 9, 109, 539
TspDTI ATGAA 5 cut(s) 137, 225, 316, 320, 487
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 2 cut(s) 169, 423
XceI RCATGY 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 81
XspI CTAG 3 cut(s) 173, 440, 577
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.