RLG00000001820

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000213
Physical Location & Seq
Forward (+)
21271542 .. 21272796
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001820

Sequence Viewer

Length: 924 bp
ATGTCGCCCAAAACCACTCTCAACCTAGCCAACAGGGCCAGCGATGGCGAAGAAGAAGGGCGTCATCGGCTTCGACGCTGCCGTGAACCACCGCATCATAAGGCCGATAAGTACAGGAGGTCTAAGAAGAAGGAGAGAAGTGAGAAGTTGAAGTTGAACGAGGAGGAGGCTAAGAAGTCTCTGTACATATGTCACATTGAACACCACCCTGGAAACTGGGTCGCTTATGTTGTCCGCGCCATCAAGTTGTCCGATTTGTTTGAAATTACGGGAAGTGGGCTGGTGGCTGATCCTCCCGCATTTGAGGTATTCGACCCGAAAGCTGGGAGTTGGGCGCCCCTGCCCGAGCCTCCATTCTTCAAACGTCATGGTCAGTATAACCGCGGTGGCAACCTCTCTTATGCAGTTACTGGCACCAAGATGTTTGTGTCTCTGGAGAGATGTCCTGTGTTCTGTTTCGATGTAGCTCACCCAGACAGAGAATGGAGATTAGTCTCTTCTATGTGCCAACGCGGCCATTTTCCTTTTGGAAACAAAGCTTTGGTCCTGGACCTGCCGGCGGGTGCTGATGACAAGAAGAAGATAATGTTTGCCTATACTATGGGTCGTTGGTATCTAAGAGTTTATCTTATGTCCTTGGAAGAAAATCAAGAATCTATCACACCGATTGGAGGTCAGAAAGCCTGCATTATTGCCCCCGAATTGGTTATGCCATATAAACAAGGACCTGATATTAACGAGGCTGGGACTCATAGGACACGGGGTGTTGCCATGCCATTTCAATTTGAAGTTGATATCACCAAGGTCGACAAGGACGAAAAGAATTGTTTGACCCTCCAATTCATGCCTACTCGTATCTTCAAATTCTATACCAACCCATCCACTTTTCCTGATCCTGAAGCATATGGTTGCTTTGTGCTGTAA

Protein Analysis

308

Amino Acids

35.12

Weight (kDa)

8.89

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 107 - 165 5.5e-07 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 561
AccB1I GGYRCC 2 cut(s) 334, 413
AccI GTMKAC 1 cut(s) 807
AccII CGCG 3 cut(s) 237, 384, 513
AciI CCGC 7 cut(s) 92, 235, 297, 382, 384, 513, 560
AclWI GGATC 2 cut(s) 284, 887
AcoI YGGCCR 1 cut(s) 514
AcsI RAATTY 1 cut(s) 863
AcuI CTGAAG 1 cut(s) 918
AcyI GRCGYC 2 cut(s) 61, 335
AdeI CACNNNGTG 1 cut(s) 764
AfaI GTAC 2 cut(s) 113, 185
AfiI CCNNNNNNNGG 4 cut(s) 323, 559, 671, 703
AgsI TTSAA 8 cut(s) 151, 157, 200, 263, 361, 782, 788, 862
AjnI CCWGG 2 cut(s) 208, 546
AluBI AGCT 3 cut(s) 323, 467, 539
AluI AGCT 3 cut(s) 323, 467, 539
Alw26I GTCTC 3 cut(s) 183, 435, 499
AlwI GGATC 2 cut(s) 284, 887
AlwNI CAGNNNCTG 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 3 cut(s) 36, 102, 514
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 863
ArsI GACNNNNNNTTYG 2 cut(s) 528, 560
AspLEI GCGC 2 cut(s) 239, 337
AspS9I GGNCC 4 cut(s) 36, 544, 550, 725
AsuHPI GGTGA 2 cut(s) 461, 790
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 3 cut(s) 544, 550, 725
BanI GGYRCC 2 cut(s) 334, 413
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BbvI GCAGC 1 cut(s) 65
BccI CCATC 3 cut(s) 38, 248, 886
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 2 cut(s) 210, 548
BcoDI GTCTC 3 cut(s) 183, 435, 499
BfaI CTAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 561
BglI GCCNNNNNGGC 2 cut(s) 35, 513
BisI GCNGC 2 cut(s) 79, 514
BlsI GCNGC 2 cut(s) 80, 515
Bme1390I CCNGG 2 cut(s) 210, 548
Bme18I GGWCC 3 cut(s) 544, 550, 725
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 4 cut(s) 36, 544, 550, 725
BmiI GGNNCC 2 cut(s) 336, 415
BmrFI CCNGG 2 cut(s) 210, 548
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 455
BsaHI GRCGYC 2 cut(s) 61, 335
BsaJI CCNNGG 4 cut(s) 208, 382, 636, 801
Bsc4I CCNNNNNNNGG 4 cut(s) 323, 559, 671, 703
Bse118I RCCGGY 1 cut(s) 556
Bse1I ACTGG 2 cut(s) 221, 415
BseBI CCWGG 2 cut(s) 210, 548
BseDI CCNNGG 4 cut(s) 208, 382, 636, 801
BseGI GGATG 1 cut(s) 878
BseLI CCNNNNNNNGG 4 cut(s) 323, 559, 671, 703
BseNI ACTGG 2 cut(s) 221, 415
BseRI GAGGAG 2 cut(s) 176, 179
BseXI GCAGC 1 cut(s) 65
BseYI CCCAGC 2 cut(s) 323, 743
Bsh1236I CGCG 3 cut(s) 237, 384, 513
BshFI GGCC 3 cut(s) 38, 104, 516
BshNI GGYRCC 2 cut(s) 334, 413
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 1 cut(s) 557
BslFI GGGAC 1 cut(s) 760
BslI CCNNNNNNNGG 4 cut(s) 323, 559, 671, 703
BsmAI GTCTC 3 cut(s) 183, 435, 499
BsmFI GGGAC 1 cut(s) 760
BsnI GGCC 3 cut(s) 38, 104, 516
BsoBI CYCGRG 1 cut(s) 344
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 2 cut(s) 289, 892
BspACI CCGC 7 cut(s) 92, 235, 297, 382, 384, 513, 560
BspANI GGCC 3 cut(s) 38, 104, 516
BspFNI CGCG 3 cut(s) 237, 384, 513
BspLI GGNNCC 2 cut(s) 336, 415
BspMI ACCTGC 1 cut(s) 561
BspPI GGATC 2 cut(s) 284, 887
BspT107I GGYRCC 2 cut(s) 334, 413
BsrFI RCCGGY 1 cut(s) 556
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 2 cut(s) 221, 415
BssAI RCCGGY 1 cut(s) 556
BssECI CCNNGG 4 cut(s) 208, 382, 636, 801
BssMI GATC 2 cut(s) 289, 892
BssNI GRCGYC 2 cut(s) 61, 335
BssT1I CCWWGG 2 cut(s) 636, 801
Bst2UI CCWGG 2 cut(s) 210, 548
Bst6I CTCTTC 1 cut(s) 502
BstACI GRCGYC 2 cut(s) 61, 335
BstAUI TGTACA 1 cut(s) 183
BstC8I GCNNGC 3 cut(s) 40, 558, 685
BstDEI CTNAG 3 cut(s) 123, 171, 617
BstDSI CCRYGG 1 cut(s) 382
BstF5I GGATG 1 cut(s) 878
BstFNI CGCG 3 cut(s) 237, 384, 513
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 2 cut(s) 239, 337
BstKTI GATC 2 cut(s) 292, 895
BstMAI GTCTC 3 cut(s) 183, 435, 499
BstMBI GATC 2 cut(s) 289, 892
BstMWI GCNNNNNNNGC 3 cut(s) 35, 67, 513
BstNI CCWGG 2 cut(s) 210, 548
BstSCI CCNGG 2 cut(s) 208, 546
BstUI CGCG 3 cut(s) 237, 384, 513
BstV1I GCAGC 1 cut(s) 65
BsuRI GGCC 3 cut(s) 38, 104, 516
BtgI CCRYGG 1 cut(s) 382
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 878
BveI ACCTGC 1 cut(s) 561
Cac8I GCNNGC 3 cut(s) 40, 558, 685
CaiI CAGNNNCTG 1 cut(s) 410
CfoI GCGC 2 cut(s) 239, 337
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 4 cut(s) 36, 544, 550, 725
Cfr42I CCGCGG 1 cut(s) 385
CseI GACGC 2 cut(s) 50, 84
Csp6I GTAC 2 cut(s) 112, 184
CviAII CATG 3 cut(s) 368, 772, 844
CviQI GTAC 2 cut(s) 112, 184
DdeI CTNAG 3 cut(s) 123, 171, 617
DinI GGCGCC 1 cut(s) 336
DpnI GATC 2 cut(s) 291, 894
DpnII GATC 2 cut(s) 289, 892
DraIII CACNNNGTG 1 cut(s) 764
EaeI YGGCCR 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 502
EarI CTCTTC 1 cut(s) 502
Eco130I CCWWGG 2 cut(s) 636, 801
Eco32I GATATC 1 cut(s) 796
Eco47I GGWCC 3 cut(s) 544, 550, 725
Eco57I CTGAAG 1 cut(s) 918
Eco88I CYCGRG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 2 cut(s) 208, 546
EcoRV GATATC 1 cut(s) 796
EcoT14I CCWWGG 2 cut(s) 636, 801
EgeI GGCGCC 1 cut(s) 336
EheI GGCGCC 1 cut(s) 336
ErhI CCWWGG 2 cut(s) 636, 801
FaeI CATG 3 cut(s) 371, 775, 847
FaqI GGGAC 1 cut(s) 760
FatI CATG 3 cut(s) 367, 771, 843
FauI CCCGC 2 cut(s) 304, 553
FauNDI CATATG 2 cut(s) 188, 904
FblI GTMKAC 1 cut(s) 807
Fnu4HI GCNGC 2 cut(s) 79, 514
FokI GGATG 1 cut(s) 865
Fsp4HI GCNGC 2 cut(s) 79, 514
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 238, 336
GluI GCNGC 2 cut(s) 79, 514
GsaI CCCAGC 2 cut(s) 327, 747
GsuI CTGGAG 1 cut(s) 455
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 3 cut(s) 38, 104, 516
HapII CCGG 1 cut(s) 557
HgaI GACGC 2 cut(s) 50, 84
HhaI GCGC 2 cut(s) 239, 337
Hin1I GRCGYC 2 cut(s) 61, 335
Hin1II CATG 3 cut(s) 371, 775, 847
Hin6I GCGC 2 cut(s) 237, 335
HinP1I GCGC 2 cut(s) 237, 335
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HindIII AAGCTT 1 cut(s) 537
HinfI GANTC 2 cut(s) 653, 748
HpaII CCGG 1 cut(s) 557
HphI GGTGA 2 cut(s) 461, 790
Hpy166II GTNNAC 2 cut(s) 86, 808
Hpy188I TCNGA 2 cut(s) 253, 678
Hpy188III TCNNGA 4 cut(s) 434, 650, 890, 896
Hpy8I GTNNAC 2 cut(s) 86, 808
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 50, 124
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 2 cut(s) 404, 687
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 67, 513
HpyF3I CTNAG 3 cut(s) 123, 171, 617
HpySE526I ACGT 1 cut(s) 364
Hsp92I GRCGYC 2 cut(s) 61, 335
Hsp92II CATG 3 cut(s) 371, 775, 847
HspAI GCGC 2 cut(s) 237, 335
KasI GGCGCC 1 cut(s) 334
KroI GCCGGC 1 cut(s) 556
KroNI GCCGGC 1 cut(s) 558
KspI CCGCGG 1 cut(s) 385
Kzo9I GATC 2 cut(s) 289, 892
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 2 cut(s) 191, 406
MalI GATC 2 cut(s) 291, 894
MboI GATC 2 cut(s) 289, 892
MboII GAAGA 9 cut(s) 62, 65, 139, 349, 489, 589, 592, 653, 850
MluCI AATT 6 cut(s) 264, 701, 782, 823, 839, 863
Mly113I GGCGCC 1 cut(s) 335
MlyI GAGTC 1 cut(s) 742
MroNI GCCGGC 1 cut(s) 556
MseI TTAA 1 cut(s) 735
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 384
MspI CCGG 1 cut(s) 557
MspR9I CCNGG 2 cut(s) 210, 548
MvaI CCWGG 2 cut(s) 210, 548
MvnI CGCG 3 cut(s) 237, 384, 513
MwoI GCNNNNNNNGC 3 cut(s) 35, 67, 513
NaeI GCCGGC 1 cut(s) 558
NarI GGCGCC 1 cut(s) 335
NdeI CATATG 2 cut(s) 188, 904
NdeII GATC 2 cut(s) 289, 892
NgoMIV GCCGGC 1 cut(s) 556
NlaIII CATG 3 cut(s) 371, 775, 847
NlaIV GGNNCC 2 cut(s) 336, 415
NmuCI GTSAC 1 cut(s) 191
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 813
PdiI GCCGGC 1 cut(s) 558
PfeI GAWTC 1 cut(s) 653
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 2 cut(s) 80, 515
PleI GAGTC 1 cut(s) 742
PluTI GGCGCC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 742
PpuMI RGGWCCY 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 2 cut(s) 208, 546
PspFI CCCAGC 2 cut(s) 323, 743
PspGI CCWGG 2 cut(s) 208, 546
PspN4I GGNNCC 2 cut(s) 336, 415
PspPI GGNCC 4 cut(s) 36, 544, 550, 725
PspPPI RGGWCCY 1 cut(s) 725
PstNI CAGNNNCTG 1 cut(s) 410
RsaI GTAC 2 cut(s) 113, 185
RsaNI GTAC 2 cut(s) 112, 184
RseI CAYNNNNRTG 1 cut(s) 419
SacII CCGCGG 1 cut(s) 385
SalI GTCGAC 1 cut(s) 806
SaqAI TTAA 1 cut(s) 735
SatI GCNGC 2 cut(s) 79, 514
Sau3AI GATC 2 cut(s) 289, 892
Sau96I GGNCC 4 cut(s) 36, 544, 550, 725
SchI GAGTC 1 cut(s) 742
ScrFI CCNGG 2 cut(s) 210, 548
SfaNI GCATC 1 cut(s) 103
SfoI GGCGCC 1 cut(s) 336
Sfr303I CCGCGG 1 cut(s) 385
SgrBI CCGCGG 1 cut(s) 385
SinI GGWCC 3 cut(s) 544, 550, 725
SmiMI CAYNNNNRTG 1 cut(s) 419
Sse9I AATT 6 cut(s) 264, 701, 782, 823, 839, 863
SsiI CCGC 7 cut(s) 92, 235, 297, 382, 384, 513, 560
SspDI GGCGCC 1 cut(s) 334
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 208, 546
StyI CCWWGG 2 cut(s) 636, 801
TaiI ACGT 1 cut(s) 367
TaqI TCGA 4 cut(s) 73, 312, 459, 807
TasI AATT 6 cut(s) 264, 701, 782, 823, 839, 863
TatI WGTACW 2 cut(s) 111, 183
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 1 cut(s) 653
Tru1I TTAA 1 cut(s) 735
Tru9I TTAA 1 cut(s) 735
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 832
VpaK11BI GGWCC 3 cut(s) 544, 550, 725
XapI RAATTY 1 cut(s) 863
XcmI CCANNNNNNNNNTGG 2 cut(s) 480, 524
XmiI GTMKAC 1 cut(s) 807
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.