Rh2AG055400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000213
Physical Location & Seq
Forward (+)
4363636 .. 4364400
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG055400.1

Sequence Viewer

Length: 603 bp
ATGTCCCCCAAAACCACTCTCAACCTGGCCAACAGATCCAGTGATGGGGAAGATGAACGGCTTCATCGACTTCGACGCTGCCGTGAACCACCGCATCATAAGGCTGAAGACGATGATGGTTTGCAATTACGGCAAGTGGGTTATAAGGCCGGGGATGAACTCCCGGGGTCTGTGGGTTGCGGTGTGTGGGGCTCCCGGATTGTTGTCGCCGCCGGCATGAAACTCTGCGGCCGTATGCCTTCATTTGATCGTCCCGACATAGTTTGGCATAGAGATGTTTACGCCTTTGAAACTGACCCCAACAAGCAGCCTCGTGATAGTAGTAGAATTACCAAGATGGGTGGCACATTAGTTGAAGCCAAGTTCCTTCCTCTGATGGAGGAGGTGGGGGCAAACTGTATGCACTTTCATACACGCTGGTGGCTGATCCTCCCTCATTTGAGGTATTCGACCCGAAAGTGGGGAGTTGGGCGCCCCTGCCTCAGCCTCCATTCTTCAAACGTCAGGGTCAGTATAACCGCGGTGGCTTCCTATCTTATGCAGTTACTGGCACCAAGATGTTTGTGTCTCAGGAGAGATGTCCTGTCTTCTGTTTTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.65

Weight (kDa)

9.34

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
AccB1I GGYRCC 2 cut(s) 471, 550
AccII CGCG 1 cut(s) 521
AciI CCGC 6 cut(s) 92, 180, 210, 228, 519, 521
AclWI GGATC 2 cut(s) 30, 421
AcoI YGGCCR 2 cut(s) 27, 229
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 472
AfiI CCNNNNNNNGG 3 cut(s) 45, 459, 460
AgsI TTSAA 3 cut(s) 290, 356, 498
AjnI CCWGG 1 cut(s) 24
AleI CACNNNNGTG 1 cut(s) 418
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 2 cut(s) 30, 421
AlwNI CAGNNNCTG 1 cut(s) 547
Ama87I CYCGRG 1 cut(s) 163
AoxI GGCC 3 cut(s) 27, 147, 229
ApeKI GCWGC 2 cut(s) 78, 307
Asp700I GAANNNNTTC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 474
AsuC2I CCSGG 4 cut(s) 151, 164, 165, 196
AvaI CYCGRG 1 cut(s) 163
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 2 cut(s) 471, 550
BanII GRGCYC 1 cut(s) 194
BauI CACGAG 1 cut(s) 312
BbsI GAAGAC 2 cut(s) 114, 579
BbvCI CCTCAGC 1 cut(s) 482
BbvI GCAGC 2 cut(s) 65, 319
BccI CCATC 4 cut(s) 38, 110, 331, 370
BceAI ACGGC 4 cut(s) 66, 74, 146, 216
BciT130I CCWGG 1 cut(s) 26
BcnI CCSGG 4 cut(s) 151, 164, 165, 196
BcoDI GTCTC 1 cut(s) 572
BfoI RGCGCY 1 cut(s) 475
BisI GCNGC 4 cut(s) 79, 210, 229, 308
BlsI GCNGC 4 cut(s) 80, 211, 230, 309
Bme1390I CCNGG 5 cut(s) 26, 151, 164, 165, 196
BmeT110I CYCGRG 1 cut(s) 163
BmiI GGNNCC 3 cut(s) 193, 473, 552
BmrFI CCNGG 5 cut(s) 26, 151, 164, 165, 196
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 2 cut(s) 114, 579
Bpu10I CCTNAGC 1 cut(s) 482
BpuMI CCSGG 4 cut(s) 151, 164, 165, 196
BsaHI GRCGYC 1 cut(s) 472
BsaJI CCNNGG 4 cut(s) 150, 163, 164, 519
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 459, 460
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 2 cut(s) 39, 552
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 4 cut(s) 150, 163, 164, 519
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 3 cut(s) 45, 459, 460
BseMII CTCAG 2 cut(s) 496, 583
BseNI ACTGG 2 cut(s) 39, 552
BseRI GAGGAG 1 cut(s) 395
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 65, 319
Bsh1236I CGCG 1 cut(s) 521
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 3 cut(s) 29, 149, 231
BshNI GGYRCC 2 cut(s) 471, 550
BsiEI CGRYCG 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 4 cut(s) 150, 164, 196, 213
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 3 cut(s) 45, 459, 460
BsmAI GTCTC 1 cut(s) 572
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 3 cut(s) 29, 149, 231
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 3 cut(s) 35, 247, 426
BspACI CCGC 6 cut(s) 92, 180, 210, 228, 519, 521
BspANI GGCC 3 cut(s) 29, 149, 231
BspCNI CTCAG 2 cut(s) 495, 582
BspFNI CGCG 1 cut(s) 521
BspLI GGNNCC 3 cut(s) 193, 473, 552
BspPI GGATC 2 cut(s) 30, 421
BspT107I GGYRCC 2 cut(s) 471, 550
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 2 cut(s) 39, 552
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 4 cut(s) 150, 163, 164, 519
BssMI GATC 3 cut(s) 35, 247, 426
BssNI GRCGYC 1 cut(s) 472
BssSI CACGAG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 398
BstACI GRCGYC 1 cut(s) 472
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 2 cut(s) 482, 569
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 521
BstH2I RGCGCY 1 cut(s) 475
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 3 cut(s) 38, 250, 429
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 3 cut(s) 35, 247, 426
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 5 cut(s) 24, 149, 162, 163, 194
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 2 cut(s) 65, 319
BstV2I GAAGAC 2 cut(s) 114, 579
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BstZI CGGCCG 1 cut(s) 229
BsuRI GGCC 3 cut(s) 29, 149, 231
BtgI CCRYGG 1 cut(s) 519
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 214
CaiI CAGNNNCTG 1 cut(s) 547
CfoI GCGC 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 212
Cfr42I CCGCGG 1 cut(s) 522
Cfr9I CCCGGG 1 cut(s) 163
CseI GACGC 1 cut(s) 84
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 1 cut(s) 217
DdeI CTNAG 2 cut(s) 482, 569
DinI GGCGCC 1 cut(s) 473
DpnI GATC 3 cut(s) 37, 249, 428
DpnII GATC 3 cut(s) 35, 247, 426
EaeI YGGCCR 2 cut(s) 27, 229
EagI CGGCCG 1 cut(s) 229
EclXI CGGCCG 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 194
Eco52I CGGCCG 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 194
EgeI GGCGCC 1 cut(s) 473
EheI GGCGCC 1 cut(s) 473
FaeI CATG 1 cut(s) 220
FaqI GGGAC 1 cut(s) 237
FatI CATG 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 79, 210, 229, 308
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 4 cut(s) 79, 210, 229, 308
GlaI GCGC 1 cut(s) 473
GluI GCNGC 4 cut(s) 79, 210, 229, 308
HaeII RGCGCY 1 cut(s) 475
HaeIII GGCC 3 cut(s) 29, 149, 231
HapII CCGG 4 cut(s) 150, 164, 196, 213
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 474
Hin1I GRCGYC 1 cut(s) 472
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HpaII CCGG 4 cut(s) 150, 164, 196, 213
Hpy166II GTNNAC 2 cut(s) 86, 280
Hpy188I TCNGA 1 cut(s) 375
Hpy188III TCNNGA 3 cut(s) 254, 314, 571
Hpy8I GTNNAC 2 cut(s) 86, 280
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 249, 377
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 3 cut(s) 124, 403, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 2 cut(s) 482, 569
HpySE526I ACGT 1 cut(s) 501
Hsp92I GRCGYC 1 cut(s) 472
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 1 cut(s) 472
KasI GGCGCC 1 cut(s) 471
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
KspI CCGCGG 1 cut(s) 522
Kzo9I GATC 3 cut(s) 35, 247, 426
LmnI GCTCC 1 cut(s) 197
Lsp1109I GCAGC 2 cut(s) 65, 319
LweI GCATC 1 cut(s) 103
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 543
MalI GATC 3 cut(s) 37, 249, 428
MboI GATC 3 cut(s) 35, 247, 426
MboII GAAGA 4 cut(s) 62, 119, 486, 579
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 194
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 2 cut(s) 125, 327
MluNI TGGCCA 1 cut(s) 29
Mly113I GGCGCC 1 cut(s) 472
MnlI CCTC 9 cut(s) 321, 373, 376, 381, 435, 440, 444, 491, 497
Mox20I TGGCCA 1 cut(s) 29
MroNI GCCGGC 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 60
MscI TGGCCA 1 cut(s) 29
MslI CAYNNNNRTG 3 cut(s) 273, 418, 556
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 4 cut(s) 150, 164, 196, 213
MspR9I CCNGG 5 cut(s) 26, 151, 164, 165, 196
MvaI CCWGG 1 cut(s) 26
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 1 cut(s) 130
NaeI GCCGGC 1 cut(s) 214
NarI GGCGCC 1 cut(s) 472
NciI CCSGG 4 cut(s) 151, 164, 165, 196
NdeII GATC 3 cut(s) 35, 247, 426
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 3 cut(s) 193, 473, 552
OliI CACNNNNGTG 1 cut(s) 418
PcsI WCGNNNNNNNCGW 2 cut(s) 64, 79
PdiI GCCGGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 60
PfoI TCCNGGA 1 cut(s) 194
PkrI GCNGC 4 cut(s) 80, 211, 230, 309
PluTI GGCGCC 1 cut(s) 475
PsiI TTATAA 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 3 cut(s) 193, 473, 552
PstNI CAGNNNCTG 1 cut(s) 547
PsuI RGATCY 1 cut(s) 35
RseI CAYNNNNRTG 3 cut(s) 273, 418, 556
SacII CCGCGG 1 cut(s) 522
SatI GCNGC 4 cut(s) 79, 210, 229, 308
Sau3AI GATC 3 cut(s) 35, 247, 426
ScrFI CCNGG 5 cut(s) 26, 151, 164, 165, 196
SduI GDGCHC 1 cut(s) 194
SetI ASST 4 cut(s) 27, 387, 446, 504
SfaNI GCATC 1 cut(s) 103
SfoI GGCGCC 1 cut(s) 473
Sfr303I CCGCGG 1 cut(s) 522
SgrBI CCGCGG 1 cut(s) 522
SmaI CCCGGG 1 cut(s) 165
SmiMI CAYNNNNRTG 3 cut(s) 273, 418, 556
Sse9I AATT 2 cut(s) 125, 327
SsiI CCGC 6 cut(s) 92, 180, 210, 228, 519, 521
SspDI GGCGCC 1 cut(s) 471
StyD4I CCNGG 5 cut(s) 24, 149, 162, 163, 194
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 1 cut(s) 504
TaqI TCGA 3 cut(s) 67, 73, 449
TasI AATT 2 cut(s) 125, 327
TauI GCSGC 2 cut(s) 212, 231
TscAI CASTG 1 cut(s) 46
TseI GCWGC 2 cut(s) 78, 307
TspDTI ATGAA 6 cut(s) 53, 69, 171, 231, 233, 398
TspMI CCCGGG 1 cut(s) 163
TspRI CASTG 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmaI CCCGGG 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.