Rmu_sc0009263.1_g000002

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009263.1
OG0000213
Physical Location & Seq
Forward (+)
11280 .. 12288
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009263.1_g000002.1.cds

Sequence Viewer

Length: 909 bp
atgccgaacaagagtaggattagtccactcccattgttattagaagagtcggagtcggagttgtgtgtatctataaaaaagcaggcccggggagtcggagtcatctctcatcttcattcccaattatctatggcccctagaaagactcataacctagcctccgccaccagcaatggcgaagaggagacgcaccatcatcggcttcgacctagcagtgtacatcatgggcagaagtctcatgagcataatatgaagaagaagaagaagaaggagaagaagaagaaaagccgagggacagagaaggtgaagaagaagaagaaactgaaattgaatgaggtggaggatgatgatccactgcaattgcgccaagtggcttatgccgctggggatcatctccccgcttccatcggtggcggggttttcggctcgcagattattttcgccggtggcgtgaaacccagcttcccaataatttcattacttcgttccgacttagtttggcatagagatgtttatgccttcgaaactgaccctaacaagcagcagcagcagccttatgatattaccaagatggatgccactctactacaagccaagttttaccctctaatcgtggagcttggcgggaaactctacgctctttccggtttgcgggtctccgatccgccttcatttgaggtatttgaccccaatgggggcaagtgggcagcttttcctcaacctccattcttccaaattggctctgggaagatgccaaattctcttatgcaattacgggcaccaagatctttgcctcccatgaaaaatgtccagtgttctgctttgacgtcgcccacccagacagagaatggagactggtctctactatgtgccaacgccgcccttttcccttctggcacgaatctctag

Protein Analysis

302

Amino Acids

33.41

Weight (kDa)

9.63

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000213)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03120 FvH4_1g03530 FvH4_1g03650 FvH4_1g03720 FvH4_1g03730 FvH4_1g03800 FvH4_1g03820 FvH4_1g03870 FvH4_1g04520 FvH4_1g04650 FvH4_1g04850 FvH4_1g04870 FvH4_1g04892 FvH4_1g04980 FvH4_1g04981 FvH4_1g04982 FvH4_1g04991 FvH4_1g05020 FvH4_1g07301 FvH4_1g07310 FvH4_1g07350 FvH4_1g07350 FvH4_1g07350 FvH4_4g06201 FvH4_4g06202 FvH4_5g09162 FvH4_5g09163 FvH4_5g09240 FvH4_5g33421 FvH4_6g38540 FvH4_7g04610
malus_domestica MD02G1004600.v1.1
prunus_persica Prupe.6G029800_v2.0.a1 Prupe.7G110000_v2.0.a1
pyrus_communis pycom08g14630
rosa_chinensis RchiOBHm_Chr1g0329851 RchiOBHm_Chr2g0088891 RchiOBHm_Chr2g0089871 RchiOBHm_Chr2g0090141 RchiOBHm_Chr2g0090221 RchiOBHm_Chr2g0090631 RchiOBHm_Chr2g0090681 RchiOBHm_Chr4g0406891 RchiOBHm_Chr7g0225411
rosa_laevigata RLG00000001820 RLG00000009686 RLG00000015981 RLG00000016002 RLG00000016071 RLG00000016075 RLG00000016114 RLG00000016124 RLG00000016128 RLG00000016216 RLG00000019065 RLG00000029766 RLG00000029767 RLG00000029858 RLG00000032448
rosa_multiflora Rmu_sc0000226.1_g000014 Rmu_sc0000236.1_g000026 Rmu_sc0000236.1_g000028 Rmu_sc0000236.1_g000029 Rmu_sc0000236.1_g000036 Rmu_sc0000259.1_g000016 Rmu_sc0000259.1_g000017 Rmu_sc0002735.1_g000001 Rmu_sc0002759.1_g000075 Rmu_sc0002986.1_g000070 Rmu_sc0003459.1_g000002 Rmu_sc0003781.1_g000013 Rmu_sc0003952.1_g000005 Rmu_sc0003952.1_g000007 Rmu_sc0004526.1_g000002 Rmu_sc0005230.1_g000003 Rmu_sc0005424.1_g000013 Rmu_sc0005689.1_g000013 Rmu_sc0005689.1_g000014 Rmu_sc0005689.1_g000019 Rmu_sc0006945.1_g000041 Rmu_sc0008896.1_g000004 Rmu_sc0008968.1_g000008 Rmu_sc0009263.1_g000002 Rmu_sc0009263.1_g000003 Rmu_sc0016852.1_g000010 Rmu_sc0016852.1_g000012 Rmu_sc0019583.1_g000001 Rmu_sc0020367.1_g000002 Rmu_sc0021487.1_g000001 Rmu_sc0040185.1_g000002
rosa_roxburghii Rroxscaffold_1G00058590 Rroxscaffold_2G00150920 Rroxscaffold_2G00150950 Rroxscaffold_2G00150990 Rroxscaffold_2G00152360 Rroxscaffold_3G00227400 Rroxscaffold_3G00233830 Rroxscaffold_4G00301200 Rroxscaffold_4G00320610 Rroxscaffold_4G00332610 Rroxscaffold_5G00339640 Rroxscaffold_5G00351660
rosa_rugosa Rorug01G0091000 Rorug01G0091100 Rorug01G0486600 Rorug01G0488200 Rorug01G0488200 Rorug02G0009400 Rorug02G0009500 Rorug02G0009800 Rorug02G0012100 Rorug02G0012200 Rorug02G0016900 Rorug03G0363800.1
rosa_samantha Rh1BG080900 Rh1BG086600 Rh1DG118000 Rh1DG251300 Rh1DG251400 Rh2AG051500 Rh2AG054700 Rh2AG054800 Rh2AG055200 Rh2AG055400 Rh2AG055700 Rh2AG061900 Rh2AG062000 Rh2CG056200 Rh2DG362400 Rh4AG053200 Rh4BG051100 Rh4DG050000 Rh5CG153500 Rh7DG375300
rosa_wichuraiana Rw1G008030 Rw1G009110 Rw1G009170 Rw1G015600 Rw2G003250 Rw2G004020 Rw2G004550 Rw2G004690 Rw2G004710 Rw2G023940 Rw3G028880 Rw4G004290 Rw5G012660 Rw5G035010 Rw7G031660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 830
AccB1I GGYRCC 1 cut(s) 778
AciI CCGC 8 cut(s) 162, 381, 399, 414, 624, 652, 665, 879
AclWI GGATC 3 cut(s) 344, 396, 656
AcsI RAATTY 1 cut(s) 757
AcyI GRCGYC 1 cut(s) 827
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 3 cut(s) 651, 694, 695
AgsI TTSAA 1 cut(s) 331
AluBI AGCT 3 cut(s) 462, 619, 710
AluI AGCT 3 cut(s) 462, 619, 710
Alw26I GTCTC 5 cut(s) 179, 240, 661, 846, 864
AlwI GGATC 3 cut(s) 344, 396, 656
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 2 cut(s) 84, 132
ApeKI GCWGC 5 cut(s) 541, 544, 547, 550, 707
ApoI RAATTY 1 cut(s) 757
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 85, 133
AsuC2I CCSGG 2 cut(s) 88, 89
AsuHPI GGTGA 1 cut(s) 316
AsuII TTCGAA 1 cut(s) 522
AvaI CYCGRG 1 cut(s) 87
BaeGI GKGCMC 1 cut(s) 781
BanI GGYRCC 1 cut(s) 778
BbvI GCAGC 5 cut(s) 553, 556, 559, 562, 719
BccI CCATC 3 cut(s) 201, 413, 565
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BcnI CCSGG 2 cut(s) 88, 89
BcoDI GTCTC 5 cut(s) 179, 240, 661, 846, 864
BfaI CTAG 4 cut(s) 138, 155, 210, 907
BglII AGATCT 1 cut(s) 785
BisI GCNGC 7 cut(s) 381, 542, 545, 548, 551, 708, 879
BlsI GCNGC 7 cut(s) 382, 543, 546, 549, 552, 709, 880
Bme1390I CCNGG 2 cut(s) 88, 89
BmeT110I CYCGRG 1 cut(s) 87
BmgT120I GGNCC 2 cut(s) 85, 133
BmiI GGNNCC 2 cut(s) 135, 780
BmrFI CCNGG 2 cut(s) 88, 89
BmsI GCATC 2 cut(s) 565, 741
Bpu14I TTCGAA 1 cut(s) 522
BpuMI CCSGG 2 cut(s) 88, 89
BsaBI GATNNNNATC 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 827
BsaI GGTCTC 2 cut(s) 661, 864
BsaJI CCNNGG 3 cut(s) 87, 88, 289
BsaWI WCCGGW 1 cut(s) 644
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 84, 114, 143, 173
Bsc4I CCNNNNNNNGG 3 cut(s) 651, 694, 695
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 811, 860
Bse3DI GCAATG 1 cut(s) 178
Bse8I GATNNNNATC 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 87, 88, 289
BseGI GGATG 2 cut(s) 349, 580
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 3 cut(s) 651, 694, 695
BseMI GCAATG 1 cut(s) 178
BseNI ACTGG 2 cut(s) 811, 860
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 781
BseXI GCAGC 5 cut(s) 553, 556, 559, 562, 719
BseYI CCCAGC 2 cut(s) 383, 458
BshFI GGCC 2 cut(s) 86, 134
BshNI GGYRCC 1 cut(s) 778
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 3 cut(s) 88, 444, 645
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 3 cut(s) 651, 694, 695
BsmAI GTCTC 5 cut(s) 179, 240, 661, 846, 864
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 2 cut(s) 86, 134
Bso31I GGTCTC 2 cut(s) 661, 864
BsoBI CYCGRG 1 cut(s) 87
Bsp119I TTCGAA 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 781
Bsp1407I TGTACA 1 cut(s) 217
Bsp143I GATC 4 cut(s) 349, 388, 661, 785
BspACI CCGC 8 cut(s) 162, 381, 399, 414, 624, 652, 665, 879
BspANI GGCC 2 cut(s) 86, 134
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 135, 780
BspPI GGATC 3 cut(s) 344, 396, 656
BspT104I TTCGAA 1 cut(s) 522
BspT107I GGYRCC 1 cut(s) 778
BspTNI GGTCTC 2 cut(s) 661, 864
BsrDI GCAATG 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 443
BsrGI TGTACA 1 cut(s) 217
BsrI ACTGG 2 cut(s) 811, 860
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 3 cut(s) 87, 88, 289
BssMI GATC 4 cut(s) 349, 388, 661, 785
BssNI GRCGYC 1 cut(s) 827
Bst6I CTCTTC 2 cut(s) 39, 174
BstACI GRCGYC 1 cut(s) 827
BstAUI TGTACA 1 cut(s) 217
BstBI TTCGAA 1 cut(s) 522
BstC8I GCNNGC 2 cut(s) 84, 428
BstDEI CTNAG 1 cut(s) 493
BstF5I GGATG 2 cut(s) 349, 580
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 4 cut(s) 352, 391, 664, 788
BstMAI GTCTC 5 cut(s) 179, 240, 661, 846, 864
BstMBI GATC 4 cut(s) 349, 388, 661, 785
BstMWI GCNNNNNNNGC 4 cut(s) 380, 547, 550, 878
BstSCI CCNGG 2 cut(s) 86, 87
BstSLI GKGCMC 1 cut(s) 781
BstV1I GCAGC 5 cut(s) 553, 556, 559, 562, 719
BstX2I RGATCY 1 cut(s) 785
BstYI RGATCY 1 cut(s) 785
BsuRI GGCC 2 cut(s) 86, 134
BtsCI GGATG 2 cut(s) 349, 580
BtsI GCAGTG 2 cut(s) 220, 353
BtsIMutI CAGTG 3 cut(s) 220, 353, 818
Cac8I GCNNGC 2 cut(s) 84, 428
CciI TCATGA 1 cut(s) 238
CfoI GCGC 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 2 cut(s) 85, 133
Cfr9I CCCGGG 1 cut(s) 87
CseI GACGC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 218
CspCI CAANNNNNGTGG 4 cut(s) 15, 50, 342, 377
CviAII CATG 3 cut(s) 224, 239, 799
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 1 cut(s) 493
DpnI GATC 4 cut(s) 351, 390, 663, 787
DpnII GATC 4 cut(s) 349, 388, 661, 785
Eam1104I CTCTTC 2 cut(s) 39, 174
EarI CTCTTC 2 cut(s) 39, 174
EciI GGCGGA 2 cut(s) 151, 654
Eco31I GGTCTC 2 cut(s) 661, 864
Eco88I CYCGRG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 3 cut(s) 227, 242, 802
FaqI GGGAC 1 cut(s) 307
FatI CATG 3 cut(s) 223, 238, 798
FauI CCCGC 4 cut(s) 406, 407, 617, 645
Fnu4HI GCNGC 7 cut(s) 381, 542, 545, 548, 551, 708, 879
FokI GGATG 2 cut(s) 356, 587
Fsp4HI GCNGC 7 cut(s) 381, 542, 545, 548, 551, 708, 879
FspBI CTAG 4 cut(s) 138, 155, 210, 907
GlaI GCGC 1 cut(s) 365
GluI GCNGC 7 cut(s) 381, 542, 545, 548, 551, 708, 879
GsaI CCCAGC 2 cut(s) 387, 462
HaeIII GGCC 2 cut(s) 86, 134
HapII CCGG 3 cut(s) 88, 444, 645
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 366
Hin1I GRCGYC 1 cut(s) 827
Hin1II CATG 3 cut(s) 227, 242, 802
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HinfI GANTC 6 cut(s) 47, 53, 93, 99, 145, 901
HpaII CCGG 3 cut(s) 88, 444, 645
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 2 cut(s) 26, 218
Hpy188I TCNGA 5 cut(s) 52, 58, 98, 490, 661
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 26, 218
Hpy99I CGWCG 1 cut(s) 832
HpyAV CCTTC 5 cut(s) 262, 295, 529, 678, 900
HpyCH4IV ACGT 1 cut(s) 827
HpyCH4V TGCA 2 cut(s) 358, 769
HpyF10VI GCNNNNNNNGC 4 cut(s) 380, 547, 550, 878
HpyF3I CTNAG 1 cut(s) 493
HpySE526I ACGT 1 cut(s) 827
Hsp92I GRCGYC 1 cut(s) 827
Hsp92II CATG 3 cut(s) 227, 242, 802
HspAI GCGC 1 cut(s) 364
Kzo9I GATC 4 cut(s) 349, 388, 661, 785
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 5 cut(s) 553, 556, 559, 562, 719
LweI GCATC 2 cut(s) 565, 741
MaeI CTAG 4 cut(s) 138, 155, 210, 907
MaeII ACGT 1 cut(s) 827
MalI GATC 4 cut(s) 351, 390, 663, 787
MboI GATC 4 cut(s) 349, 388, 661, 785
MfeI CAATTG 1 cut(s) 359
MflI RGATCY 1 cut(s) 785
MhlI GDGCHC 1 cut(s) 781
MluCI AATT 7 cut(s) 122, 326, 359, 471, 735, 757, 770
MlyI GAGTC 5 cut(s) 56, 62, 102, 108, 139
MmeI TCCRAC 4 cut(s) 30, 36, 76, 513
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 3 cut(s) 88, 444, 645
MspR9I CCNGG 2 cut(s) 88, 89
MunI CAATTG 1 cut(s) 359
MwoI GCNNNNNNNGC 4 cut(s) 380, 547, 550, 878
NciI CCSGG 2 cut(s) 88, 89
NdeII GATC 4 cut(s) 349, 388, 661, 785
NlaIII CATG 3 cut(s) 227, 242, 802
NlaIV GGNNCC 2 cut(s) 135, 780
NmeAIII GCCGAG 1 cut(s) 314
NspV TTCGAA 1 cut(s) 522
PagI TCATGA 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PfeI GAWTC 1 cut(s) 901
PkrI GCNGC 7 cut(s) 382, 543, 546, 549, 552, 709, 880
PleI GAGTC 5 cut(s) 55, 61, 101, 107, 139
PpsI GAGTC 5 cut(s) 55, 61, 101, 107, 139
PspFI CCCAGC 2 cut(s) 383, 458
PspN4I GGNNCC 2 cut(s) 135, 780
PspPI GGNCC 2 cut(s) 85, 133
PsuI RGATCY 1 cut(s) 785
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 507
SatI GCNGC 7 cut(s) 381, 542, 545, 548, 551, 708, 879
Sau3AI GATC 4 cut(s) 349, 388, 661, 785
Sau96I GGNCC 2 cut(s) 85, 133
SchI GAGTC 5 cut(s) 56, 62, 102, 108, 139
ScrFI CCNGG 2 cut(s) 88, 89
SduI GDGCHC 1 cut(s) 781
SfaNI GCATC 2 cut(s) 565, 741
SfuI TTCGAA 1 cut(s) 522
SgrAI CRCCGGYG 1 cut(s) 443
SmaI CCCGGG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 507
Sse9I AATT 7 cut(s) 122, 326, 359, 471, 735, 757, 770
SsiI CCGC 8 cut(s) 162, 381, 399, 414, 624, 652, 665, 879
SspMI CTAG 4 cut(s) 138, 155, 210, 907
StyD4I CCNGG 2 cut(s) 86, 87
TaiI ACGT 1 cut(s) 830
TaqI TCGA 2 cut(s) 205, 522
TasI AATT 7 cut(s) 122, 326, 359, 471, 735, 757, 770
TatI WGTACW 1 cut(s) 217
TauI GCSGC 2 cut(s) 383, 881
TfiI GAWTC 1 cut(s) 901
TscAI CASTG 3 cut(s) 220, 360, 818
TseI GCWGC 5 cut(s) 541, 544, 547, 550, 707
TspDTI ATGAA 5 cut(s) 104, 266, 465, 660, 815
TspMI CCCGGG 1 cut(s) 87
TspRI CASTG 3 cut(s) 220, 360, 818
XapI RAATTY 1 cut(s) 757
XcmI CCANNNNNNNNNTGG 2 cut(s) 740, 845
XmaI CCCGGG 1 cut(s) 87
XspI CTAG 4 cut(s) 138, 155, 210, 907
ZraI GACGTC 1 cut(s) 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.